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PDB: 546 results

2XP4
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BU of 2xp4 by Molmil
DISCOVERY OF CELL-ACTIVE PHENYL-IMIDAZOLE PIN1 INHIBITORS BY STRUCTURE-GUIDED FRAGMENT EVOLUTION
Descriptor: 2-phenyl-1H-imidazole-4-carboxylic acid, DODECAETHYLENE GLYCOL, PEPTIDYL-PROLYL CIS-TRANS ISOMERASE NIMA-INTERACTING 1
Authors:Potter, A, Oldfield, V, Nunns, C, Fromont, C, Ray, S, Northfield, C.J, Bryant, C.J, Scrace, S.F, Robinson, D, Matossova, N, Baker, L, Dokurno, P, Surgenor, A.E, Davis, B.E, Richardson, C.M, Murray, J.B, Moore, J.D.
Deposit date:2010-08-25
Release date:2011-01-12
Last modified:2023-12-20
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Discovery of Cell-Active Phenyl-Imidazole Pin1 Inhibitors by Structure-Guided Fragment Evolution.
Bioorg.Med.Chem.Lett., 20, 2010
8YM7
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Crystal structure of Lysine Specific Demethylase 1 (LSD1) with JH-45
Descriptor: 4-[5-(4-azanylpiperidin-1-yl)-8-(4-methylphenyl)pyrido[3,4-b]pyrazin-7-yl]-2-fluoranyl-benzenecarbonitrile, FLAVIN-ADENINE DINUCLEOTIDE, Lysine-specific histone demethylase 1A, ...
Authors:Zhiyan, D, Danyan, C, Hong, J, Tongchao, L, Bing, X.
Deposit date:2024-03-08
Release date:2024-05-22
Method:X-RAY DIFFRACTION (2.83 Å)
Cite:Discovery of Novel LSD1 Inhibitors for the Treatment of Autosomal Dominant Polycystic Kidney Disease
To Be Published
4EMP
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BU of 4emp by Molmil
Crystal structure of the mutant of ClpP E137A from Staphylococcus aureus
Descriptor: ATP-dependent Clp protease proteolytic subunit
Authors:Ye, F, Zhang, J, Liu, H, Luo, C, Yang, C.-G.
Deposit date:2012-04-12
Release date:2013-04-17
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (2.7 Å)
Cite:Helix unfolding/refolding characterizes the functional dynamics of Staphylococcus aureus Clp protease
J.Biol.Chem., 288, 2013
4IWM
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BU of 4iwm by Molmil
Crystal Structure of the Conserved Hypothetical Protein MJ0927 from Methanocaldococcus jannaschii (in P21 form)
Descriptor: UPF0135 protein MJ0927
Authors:Kuan, S.M, Chen, S.C, Yang, C.S, Chen, Y.R, Liu, Y.H, Chen, Y.
Deposit date:2013-01-24
Release date:2014-01-29
Last modified:2021-04-21
Method:X-RAY DIFFRACTION (2.7 Å)
Cite:Crystal structure of a conserved hypothetical protein MJ0927 from Methanocaldococcus jannaschii reveals a novel quaternary assembly in the Nif3 family.
Biomed Res Int, 2014, 2014
4IWG
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BU of 4iwg by Molmil
Crystal Structure of the Conserved Hypothetical Protein MJ0927 from Methanocaldococcus jannaschii (in C2221 form)
Descriptor: UPF0135 protein MJ0927
Authors:Kuan, S.M, Chen, S.C, Yang, C.S, Chen, Y.R, Liu, Y.H, Chen, Y.
Deposit date:2013-01-23
Release date:2014-01-29
Last modified:2024-03-20
Method:X-RAY DIFFRACTION (2.472 Å)
Cite:Crystal structure of a conserved hypothetical protein MJ0927 from Methanocaldococcus jannaschii reveals a novel quaternary assembly in the Nif3 family.
Biomed Res Int, 2014, 2014
4HBL
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BU of 4hbl by Molmil
Crystal structure of AbfR of Staphylococcus epidermidis
Descriptor: Transcriptional regulator, MarR family
Authors:Liu, X, Sun, X, Gan, J, Lan, L, Yang, C.-G.
Deposit date:2012-09-28
Release date:2013-01-02
Last modified:2013-02-27
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:Oxidation-sensing Regulator AbfR Regulates Oxidative Stress Responses, Bacterial Aggregation, and Biofilm Formation in Staphylococcus epidermidis.
J.Biol.Chem., 288, 2013
4KPH
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BU of 4kph by Molmil
Structure of the Fab fragment of N62, a protective monoclonal antibody to the nonreducing end of Francisella tularensis O-antigen
Descriptor: ACETATE ION, N62 heavy chain, N62 light chain
Authors:Lu, Z, Rynkiewicz, M.J, Yang, C.-Y, Madico, G, Perkins, H.M, Wang, Q, Costello, C.E, Zaia, J, Seaton, B.A, Sharon, J.
Deposit date:2013-05-13
Release date:2013-07-24
Last modified:2023-09-20
Method:X-RAY DIFFRACTION (2.59 Å)
Cite:The binding sites of monoclonal antibodies to the non-reducing end of Francisella tularensis O-antigen accommodate mainly the terminal saccharide.
Immunology, 140, 2013
3ST9
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BU of 3st9 by Molmil
Crystal structure of ClpP in heptameric form from Staphylococcus aureus
Descriptor: ATP-dependent Clp protease proteolytic subunit, CALCIUM ION, GLYCEROL, ...
Authors:Zhang, J, Ye, F, Lan, L, Jiang, H, Luo, C, Yang, C.-G.
Deposit date:2011-07-09
Release date:2011-09-07
Last modified:2024-03-20
Method:X-RAY DIFFRACTION (2.43 Å)
Cite:Structural switching of Staphylococcus aureus Clp protease: a key to understanding protease dynamics
J.Biol.Chem., 286, 2011
3OQT
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BU of 3oqt by Molmil
Crystal structure of Rv1498A protein from mycobacterium tuberculosis
Descriptor: CHLORIDE ION, Rv1498A PROTEIN, SODIUM ION
Authors:Liu, F, Xiong, J, Kumar, S, Yang, C, Li, S, Ge, S, Xia, N, Swaminathan, K.
Deposit date:2010-09-04
Release date:2011-07-20
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (2.88 Å)
Cite:Structural and biophysical characterization of Mycobacterium tuberculosis dodecin Rv1498A.
J.Struct.Biol., 175, 2011
2WFK
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BU of 2wfk by Molmil
Calcium bound LipL32
Descriptor: CALCIUM ION, LIPL32
Authors:Tung, J.-Y, Yang, C.-W, Sun, Y.-J.
Deposit date:2009-04-07
Release date:2009-11-24
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Calcium Binds to Lipl32, a Lipoprotein from Pathogenic Leptospira, and Modulates Fibronectin Binding.
J.Biol.Chem., 285, 2010
3STA
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BU of 3sta by Molmil
Crystal structure of ClpP in tetradecameric form from Staphylococcus aureus
Descriptor: ATP-dependent Clp protease proteolytic subunit
Authors:Zhang, J, Ye, F, Lan, L, Jiang, H, Luo, C, Yang, C.-G.
Deposit date:2011-07-09
Release date:2011-09-07
Last modified:2024-03-20
Method:X-RAY DIFFRACTION (2.28 Å)
Cite:Structural switching of Staphylococcus aureus Clp protease: a key to understanding protease dynamics
J.Biol.Chem., 286, 2011
4EMM
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BU of 4emm by Molmil
Crystal structure of Staphylococcus aureus ClpP in compact conformation
Descriptor: ATP-dependent Clp protease proteolytic subunit
Authors:Zhang, J, Liu, H, Yang, C.-G.
Deposit date:2012-04-12
Release date:2013-04-17
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:Helix unfolding/refolding characterizes the functional dynamics of Staphylococcus aureus Clp protease
J.Biol.Chem., 288, 2013
3OLJ
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BU of 3olj by Molmil
Crystal structure of human ribonucleotide reductase subunit M2 (hRRM2)
Descriptor: Ribonucleoside-diphosphate reductase subunit M2, SODIUM ION
Authors:Chen, X.H, Xu, Z.J, Chen, B.E, Jiang, H.J, Yang, C.G, Zhu, W.L, Shao, J.M.
Deposit date:2010-08-26
Release date:2011-08-31
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:hRRM2
To be Published
4IXA
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BU of 4ixa by Molmil
Structure of DNA-binding domain of the response regulator SaeR from Staphylococcus epidermidis
Descriptor: Response regulator SaeR
Authors:Chen, Y.R, Chen, S.C, Yang, C.S, Kuan, S.M, Liu, Y.H, Chen, Y.
Deposit date:2013-01-24
Release date:2014-01-29
Last modified:2024-03-20
Method:X-RAY DIFFRACTION (2.15 Å)
Cite:Structure of DNA-binding domain of the response regulator SaeR from Staphylococcus epidermidis
To be Published
3FYS
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BU of 3fys by Molmil
Crystal Structure of DegV, a fatty acid binding protein from Bacillus subtilis
Descriptor: 1,2-ETHANEDIOL, BROMIDE ION, PALMITIC ACID, ...
Authors:Nan, J, Zhou, Y.F, Yang, C.
Deposit date:2009-01-23
Release date:2009-05-12
Last modified:2024-03-20
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:Structure of a fatty acid-binding protein from Bacillus subtilis determined by sulfur-SAD phasing using in-house chromium radiation
Acta Crystallogr.,Sect.D, 65, 2009
2W38
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BU of 2w38 by Molmil
Crystal structure of the pseudaminidase from Pseudomonas aeruginosa
Descriptor: GLYCEROL, SIALIDASE
Authors:Xu, G, Ryan, C, Kiefel, M.J, Wilson, J.C, Taylor, G.L.
Deposit date:2008-11-07
Release date:2008-12-23
Last modified:2024-05-08
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Structural Studies on the Pseudomonas Aeruginosa Sialidase-Like Enzyme Pa2794 Suggest Substrate and Mechanistic Variations.
J.Mol.Biol., 386, 2009
3TCP
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BU of 3tcp by Molmil
Crystal structure of the catalytic domain of the proto-oncogene tyrosine-protein kinase MER in complex with inhibitor UNC569
Descriptor: 1-[(trans-4-aminocyclohexyl)methyl]-N-butyl-3-(4-fluorophenyl)-1H-pyrazolo[3,4-d]pyrimidin-6-amine, CALCIUM ION, CHLORIDE ION, ...
Authors:Liu, J, Yang, C, Simpson, C, DeRyckere, D, Van Deusen, A, Miley, M, Kireev, D.B, Norris-Drouin, J, Sather, S, Hunter, D, Patel, H.S, Janzen, W.P, Machius, M, Johnson, G, Earp, H.S, Graham, D.K, Frye, S, Wang, X.
Deposit date:2011-08-09
Release date:2012-06-20
Last modified:2023-09-13
Method:X-RAY DIFFRACTION (2.69 Å)
Cite:Discovery of Novel Small Molecule Mer Kinase Inhibitors for the Treatment of Pediatric Acute Lymphoblastic Leukemia.
ACS Med Chem Lett, 3, 2012
3NUQ
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BU of 3nuq by Molmil
Structure of a putative nucleotide phosphatase from Saccharomyces cerevisiae
Descriptor: 1,2-ETHANEDIOL, CHLORIDE ION, DI(HYDROXYETHYL)ETHER, ...
Authors:Dong, A, Yang, C, Singer, A.U, Evdokimova, E, Kudritsdka, M, Brown, G, Edwards, A.M, Joachimiak, A, Savchenko, A, Yakunin, A.F, Midwest Center for Structural Genomics (MCSG)
Deposit date:2010-07-07
Release date:2010-08-18
Last modified:2024-04-03
Method:X-RAY DIFFRACTION (1.7 Å)
Cite:Structure of a putative nucleotide phosphatase from Saccharomyces cerevisiae
To be Published
4AK8
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BU of 4ak8 by Molmil
Structure of F241L mutant of langerin carbohydrate recognition domain.
Descriptor: C-TYPE LECTIN DOMAIN FAMILY 4 MEMBER K, CALCIUM ION, CHLORIDE ION, ...
Authors:Chabrol, E, Thepaut, M, Dezutter-Dambuyant, C, Vives, C, Marcoux, J, Kahn, R, Valadeau-Guilemond, J, Vachette, P, Durand, D, Fieschi, F.
Deposit date:2012-02-22
Release date:2013-04-03
Last modified:2023-12-20
Method:X-RAY DIFFRACTION (1.4 Å)
Cite:Alteration of the Langerin Oligomerization State Affects Birbeck Granule Formation.
Biophys.J., 108, 2015
3ZRS
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BU of 3zrs by Molmil
X-ray crystal structure of a KirBac potassium channel highlights a mechanism of channel opening at the bundle-crossing gate.
Descriptor: ATP-SENSITIVE INWARD RECTIFIER POTASSIUM CHANNEL 10, CHLORIDE ION, POTASSIUM ION
Authors:Bavro, V.N, De Zorzi, R, Schmidt, M.R, Muniz, J.R.C, Zubcevic, L, Sansom, M.S.P, Venien-Bryan, C, Tucker, S.J.
Deposit date:2011-06-17
Release date:2012-01-11
Last modified:2023-12-20
Method:X-RAY DIFFRACTION (3.05 Å)
Cite:Structure of a Kirbac Potassium Channel with an Open Bundle Crossing Indicates a Mechanism of Channel Gating
Nat.Struct.Mol.Biol., 19, 2012
7CAM
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BU of 7cam by Molmil
SARS-CoV-2 main protease (Mpro) apo structure (space group P212121)
Descriptor: 3C-like proteinase
Authors:Wang, Y.C, Yang, C.S, Hou, M.H, Tsai, C.L, Chou, Y.Z, Chen, Y.
Deposit date:2020-06-09
Release date:2021-05-05
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (2.85 Å)
Cite:Structural basis of SARS-CoV-2 main protease inhibition by a broad-spectrum anti-coronaviral drug.
Am J Cancer Res, 10, 2020
7CB7
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BU of 7cb7 by Molmil
1.7A resolution structure of SARS-CoV-2 main protease (Mpro) in complex with broad-spectrum coronavirus protease inhibitor GC376
Descriptor: (1R,2S)-2-({N-[(benzyloxy)carbonyl]-L-leucyl}amino)-1-hydroxy-3-[(3S)-2-oxopyrrolidin-3-yl]propane-1-sulfonic acid, (1S,2S)-2-({N-[(benzyloxy)carbonyl]-L-leucyl}amino)-1-hydroxy-3-[(3S)-2-oxopyrrolidin-3-yl]propane-1-sulfonic acid, 3C-like proteinase, ...
Authors:Wang, Y.C, Yang, C.S, Hou, M.H, Tsai, C.L, Chou, Y.Z, Chen, Y, Hung, M.C.
Deposit date:2020-06-10
Release date:2021-05-05
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (1.69 Å)
Cite:Structural basis of SARS-CoV-2 main protease inhibition by a broad-spectrum anti-coronaviral drug.
Am J Cancer Res, 10, 2020
4K7E
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BU of 4k7e by Molmil
Crystal structure of Junin virus nucleoprotein
Descriptor: Nucleoprotein
Authors:Zhang, Y.J, Li, L, Liu, X, Dong, S.S, Wang, W.M, Huo, T, Rao, Z.H, Yang, C.
Deposit date:2013-04-17
Release date:2013-08-07
Last modified:2013-10-16
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Crystal structure of Junin virus nucleoprotein
J.Gen.Virol., 94, 2013
2AZP
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BU of 2azp by Molmil
Crystal Structure of PA1268 Solved by Sulfur SAD
Descriptor: hypothetical protein PA1268
Authors:Liu, Y, Gorodichtchenskaia, E, Skarina, T, Yang, C, Joachimiak, A, Edwards, A, Pai, E.F, Savchenko, A, Midwest Center for Structural Genomics (MCSG)
Deposit date:2005-09-12
Release date:2005-12-20
Last modified:2024-02-14
Method:X-RAY DIFFRACTION (2.13 Å)
Cite:Crystal Structure of PA1268 Solved by Sulfur SAD
To be Published
2AR3
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BU of 2ar3 by Molmil
E90A mutant structure of PlyL
Descriptor: PHOSPHATE ION, ZINC ION, prophage lambdaba02, ...
Authors:Low, L.Y, Yang, C, Perego, M, Osterman, A, Liddington, R.C.
Deposit date:2005-08-19
Release date:2006-06-06
Last modified:2024-02-14
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Structure and lytic activity of a Bacillus anthracis prophage endolysin.
J.Biol.Chem., 280, 2005

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