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PDB: 121 results

7WC0
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Crystal structure of Fab region of TAU-2212 neutralizing SARS-CoV-2
Descriptor: TAU-2212 Heavy chain, TAU-2212 Light chain
Authors:Xiang, Y, Li, R, Ma, B.
Deposit date:2021-12-17
Release date:2022-08-10
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (2.705 Å)
Cite:Conformational flexibility in neutralization of SARS-CoV-2 by naturally elicited anti-SARS-CoV-2 antibodies.
Commun Biol, 5, 2022
7Y42
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Cryo-EM structure of the SARS-CoV-2 spike glycoprotein in complex with all-trans retinoic acid
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, RETINOIC ACID, Spike glycoprotein
Authors:Xiang, Y, Wang, L.
Deposit date:2022-06-13
Release date:2022-07-06
Last modified:2022-09-14
Method:ELECTRON MICROSCOPY (3.45 Å)
Cite:A Retinol Derivative Inhibits SARS-CoV-2 Infection by Interrupting Spike-Mediated Cellular Entry.
Mbio, 13, 2022
3GQH
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Crystal Structure of the Bacteriophage phi29 gene product 12 C-terminal fragment
Descriptor: Preneck appendage protein
Authors:Xiang, Y, Rossmann, M.G.
Deposit date:2009-03-24
Release date:2009-05-26
Last modified:2024-02-21
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Crystallographic insights into the autocatalytic assembly mechanism of a bacteriophage tail spike.
Mol.Cell, 34, 2009
3CSZ
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Crystal and cryoEM structural studies of a cell wall degrading enzyme in the bacteriophage phi29 tail
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, Morphogenesis protein 1
Authors:Xiang, Y, Rossmann, M.G.
Deposit date:2008-04-10
Release date:2008-07-01
Last modified:2024-02-21
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Crystal and cryoEM structural studies of a cell wall degrading enzyme in the bacteriophage phi29 tail.
Proc.Natl.Acad.Sci.Usa, 105, 2008
3CT5
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BU of 3ct5 by Molmil
Crystal and cryoEM structural studies of a cell wall degrading enzyme in the bacteriophage phi29 tail
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, Morphogenesis protein 1
Authors:Xiang, Y, Rossmann, M.G.
Deposit date:2008-04-11
Release date:2008-07-01
Last modified:2024-02-21
Method:X-RAY DIFFRACTION (1.37 Å)
Cite:Crystal and cryoEM structural studies of a cell wall degrading enzyme in the bacteriophage phi29 tail.
Proc.Natl.Acad.Sci.Usa, 105, 2008
3CSR
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Crystal and cryoEM structural studies of a cell wall degrading enzyme in the bacteriophage phi29 tail
Descriptor: Morphogenesis protein 1
Authors:Xiang, Y, Rossmann, M.G.
Deposit date:2008-04-10
Release date:2008-07-01
Last modified:2024-02-21
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Crystal and cryoEM structural studies of a cell wall degrading enzyme in the bacteriophage phi29 tail.
Proc.Natl.Acad.Sci.Usa, 105, 2008
3CT1
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BU of 3ct1 by Molmil
Crystal and cryoEM structural studies of a cell wall degrading enzyme in the bacteriophage phi29 tail
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, Morphogenesis protein 1
Authors:Xiang, Y, Rossmann, M.G.
Deposit date:2008-04-11
Release date:2008-07-01
Last modified:2024-02-21
Method:X-RAY DIFFRACTION (1.51 Å)
Cite:Crystal and cryoEM structural studies of a cell wall degrading enzyme in the bacteriophage phi29 tail.
Proc.Natl.Acad.Sci.Usa, 105, 2008
3CSQ
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Crystal and cryoEM structural studies of a cell wall degrading enzyme in the bacteriophage phi29 tail
Descriptor: Morphogenesis protein 1, ZINC ION
Authors:Xiang, Y, Rossmann, M.G.
Deposit date:2008-04-10
Release date:2008-07-01
Last modified:2024-02-21
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Crystal and cryoEM structural studies of a cell wall degrading enzyme in the bacteriophage phi29 tail.
Proc.Natl.Acad.Sci.Usa, 105, 2008
3CT0
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BU of 3ct0 by Molmil
Crystal and cryoEM structural studies of a cell wall degrading enzyme in the bacteriophage phi29 tail
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, Morphogenesis protein 1
Authors:Xiang, Y, Rossmann, M.G.
Deposit date:2008-04-11
Release date:2008-07-01
Last modified:2024-02-21
Method:X-RAY DIFFRACTION (1.77 Å)
Cite:Crystal and cryoEM structural studies of a cell wall degrading enzyme in the bacteriophage phi29 tail.
Proc.Natl.Acad.Sci.Usa, 105, 2008
3OY7
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Crystal structure of a virus encoded glycosyltransferase in complex with GDP-mannose
Descriptor: GUANOSINE-5'-DIPHOSPHATE-ALPHA-D-MANNOSE, Glycosyltransferase B736L
Authors:Xiang, Y, Rossmann, M.G.
Deposit date:2010-09-23
Release date:2010-11-17
Last modified:2024-02-21
Method:X-RAY DIFFRACTION (2.73 Å)
Cite:Crystal structure of a virus-encoded putative glycosyltransferase.
J.Virol., 84, 2010
3OY2
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Crystal structure of a putative glycosyltransferase from Paramecium bursaria Chlorella virus NY2A
Descriptor: Glycosyltransferase B736L
Authors:Xiang, Y, Rossmann, M.G.
Deposit date:2010-09-22
Release date:2010-11-17
Last modified:2024-02-21
Method:X-RAY DIFFRACTION (2.31 Å)
Cite:Crystal structure of a virus-encoded putative glycosyltransferase
J.Virol., 84, 2010
3QC7
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The structure of bacteriophage phi29 head fibers has a supercoiled triple repeating helix-turn-helix motif
Descriptor: Head fiber protein
Authors:Xiang, Y, Rossmann, M.G.
Deposit date:2011-01-15
Release date:2011-01-26
Last modified:2024-02-21
Method:X-RAY DIFFRACTION (1.52 Å)
Cite:Structure of bacteriophage {phi}29 head fibers has a supercoiled triple repeating helix-turn-helix motif.
Proc.Natl.Acad.Sci.USA, 108, 2011
7WCD
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BU of 7wcd by Molmil
Cryo EM structure of SARS-CoV-2 spike in complex with TAU-2212 mAbs in conformation 4
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, Heavy chain, Light chain, ...
Authors:Xiang, Y, Ma, B, Li, R.
Deposit date:2021-12-19
Release date:2022-08-10
Last modified:2022-08-17
Method:ELECTRON MICROSCOPY (3.3 Å)
Cite:Conformational flexibility in neutralization of SARS-CoV-2 by naturally elicited anti-SARS-CoV-2 antibodies.
Commun Biol, 5, 2022
3R02
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BU of 3r02 by Molmil
The discovery of novel benzofuran-2-carboxylic acids as potent Pim-1 inhibitors
Descriptor: 7-[(cis-4-aminocyclohexyl)amino]-5-bromo-1-benzofuran-2-carboxylic acid, IMIDAZOLE, Proto-oncogene serine/threonine-protein kinase pim-1
Authors:Xiang, Y, Hirth, B, Asmussen, G, Biemann, H.-P, Good, A, Fitzgerald, M, Gladysheva, T, Jancsics, K, Liu, J, Metz, M, Papoulis, A, Skerlj, R, Stepp, D.J, Wei, R.R.
Deposit date:2011-03-07
Release date:2011-05-11
Last modified:2024-02-21
Method:X-RAY DIFFRACTION (1.95 Å)
Cite:The discovery of novel benzofuran-2-carboxylic acids as potent Pim-1 inhibitors.
Bioorg.Med.Chem.Lett., 21, 2011
3R04
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BU of 3r04 by Molmil
The discovery of novel benzofuran-2-carboxylic acids as potent Pim-1 inhibitors
Descriptor: 5-{6-[(trans-4-aminocyclohexyl)amino]pyrazin-2-yl}-1-benzofuran-2-carboxylic acid, IMIDAZOLE, Proto-oncogene serine/threonine-protein kinase pim-1
Authors:Xiang, Y, Hirth, B, Asmussen, G, Biemann, H.-P, Good, A, Fitzgerald, M, Gladysheva, T, Jancsics, K, Liu, J, Metz, M, Papoulis, A, Skerlj, R, Stepp, D.J, Wei, R.R.
Deposit date:2011-03-07
Release date:2011-05-11
Last modified:2024-02-21
Method:X-RAY DIFFRACTION (1.7 Å)
Cite:The discovery of novel benzofuran-2-carboxylic acids as potent Pim-1 inhibitors.
Bioorg.Med.Chem.Lett., 21, 2011
7WBZ
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BU of 7wbz by Molmil
Crystal structure of the SARS-Cov-2 RBD in complex with Fab 2303
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2303 heavy chain, 2303 light chain, ...
Authors:Xiang, Y, Ma, B.
Deposit date:2021-12-17
Release date:2022-08-31
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (2.42 Å)
Cite:Conformational flexibility in neutralization of SARS-CoV-2 by naturally elicited anti-SARS-CoV-2 antibodies.
Commun Biol, 5, 2022
1KV0
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BU of 1kv0 by Molmil
Cis/trans Isomerization of Non-prolyl Peptide Bond Observed in Crystal Structure of an Scorpion Toxin
Descriptor: Alpha-like toxin BmK-M7
Authors:Guan, R.J, He, X.L, Wang, M, Xiang, Y, Wang, D.C.
Deposit date:2002-01-23
Release date:2003-09-16
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (1.4 Å)
Cite:Structural mechanism governing cis and trans isomeric states and an intramolecular switch for cis/trans isomerization of a non-proline peptide bond observed in crystal structures of scorpion toxins.
J.Mol.Biol., 341, 2004
7TA8
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BU of 7ta8 by Molmil
NMR structure of crosslinked cyclophilin A
Descriptor: Peptidyl-prolyl cis-trans isomerase A
Authors:Lu, M, Toptygin, D, Xiang, Y, Shi, Y, Schwieters, C.D, Lipinski, E.C, Ahn, J, Byeon, I.-J.L, Gronenborn, A.M.
Deposit date:2021-12-20
Release date:2022-06-01
Last modified:2023-06-14
Method:SOLUTION NMR
Cite:The Magic of Linking Rings: Discovery of a Unique Photoinduced Fluorescent Protein Crosslink.
J.Am.Chem.Soc., 144, 2022
4U03
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BU of 4u03 by Molmil
Structure of the vibrio cholerae di-nucleotide cyclase (DncV) in complex with GTP and 5MTHFGLU2
Descriptor: Cyclic AMP-GMP synthase, GUANOSINE-5'-TRIPHOSPHATE, MAGNESIUM ION, ...
Authors:Zhu, D.Y, Xiang, Y.
Deposit date:2014-07-11
Release date:2014-09-17
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (2.041 Å)
Cite:Structural Biochemistry of a Vibrio cholerae Dinucleotide Cyclase Reveals Cyclase Activity Regulation by Folates.
Mol.Cell, 55, 2014
7Y1C
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BU of 7y1c by Molmil
CryoEM structure of Klebsiella phage Kp9 tail complex applied with C6 symmetry
Descriptor: phage connector protein, phage tail tubular protein A, phage tail tubular protein B, ...
Authors:Huang, L, Xiang, Y.
Deposit date:2022-06-08
Release date:2023-06-14
Method:ELECTRON MICROSCOPY (3.13 Å)
Cite:Structure and assembly of the Klebsiella pneumoniae phage tail fibers
To Be Published
7Y22
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CryoEM structure of Klebsiella phage Kp7 tail complex applied with C6 symmetry
Descriptor: phage connector protein, phage tail tubular protein A, phage tail tubular protein B, ...
Authors:Huang, L, Xiang, Y.
Deposit date:2022-06-09
Release date:2023-06-14
Method:ELECTRON MICROSCOPY (4 Å)
Cite:Structure and assembly of the Klebsiella pneumoniae phage tail fibers
To Be Published
4U0M
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BU of 4u0m by Molmil
Structure of the Vibrio cholerae di-nucleotide cyclase (DncV) mutant D193N in complex with ATP, GTP and 5MTHFGLU2
Descriptor: ADENOSINE-5'-TRIPHOSPHATE, Cyclic AMP-GMP synthase, GUANOSINE-5'-TRIPHOSPHATE, ...
Authors:Zhu, D, Xiang, Y.
Deposit date:2014-07-12
Release date:2014-09-17
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Structural Biochemistry of a Vibrio cholerae Dinucleotide Cyclase Reveals Cyclase Activity Regulation by Folates.
Mol.Cell, 55, 2014
5KIJ
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BU of 5kij by Molmil
Crystal structure of the class I human endoplasmic reticulum 1,2-alpha-mannosidase and Man9GlcNAc2-PA complex
Descriptor: 1,4-BUTANEDIOL, 3-PYRIDINIUM-1-YLPROPANE-1-SULFONATE, Endoplasmic reticulum mannosyl-oligosaccharide 1,2-alpha-mannosidase, ...
Authors:Karaveg, K, Xiang, Y, Moremen, K.W.
Deposit date:2016-06-16
Release date:2017-05-10
Last modified:2023-09-27
Method:X-RAY DIFFRACTION (1.649 Å)
Cite:Substrate recognition and catalysis by GH47 alpha-mannosidases involved in Asn-linked glycan maturation in the mammalian secretory pathway.
Proc. Natl. Acad. Sci. U.S.A., 113, 2016
5KK7
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BU of 5kk7 by Molmil
Crystal structure of the class I human endoplasmic reticulum 1,2-alpha-mannosidase T688A mutant and Thio-disaccharide substrate analog complex
Descriptor: 1,4-BUTANEDIOL, 3-PYRIDINIUM-1-YLPROPANE-1-SULFONATE, ACETATE ION, ...
Authors:Karaveg, K, Xiang, Y, Moremen, K.W.
Deposit date:2016-06-21
Release date:2017-05-10
Last modified:2020-07-29
Method:X-RAY DIFFRACTION (1.7324 Å)
Cite:Substrate recognition and catalysis by GH47 alpha-mannosidases involved in Asn-linked glycan maturation in the mammalian secretory pathway.
Proc. Natl. Acad. Sci. U.S.A., 113, 2016
4W60
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BU of 4w60 by Molmil
The structure of Vaccina virus H7 protein displays A Novel Phosphoinositide binding fold required for membrane biogenesis
Descriptor: Late protein H7
Authors:Kolli, S, Meng, X, Wu, X, Shengjuler, D, Cameron, C.E, Xiang, Y, Deng, J.
Deposit date:2014-08-19
Release date:2014-12-31
Last modified:2023-12-27
Method:X-RAY DIFFRACTION (2.7 Å)
Cite:Structure-function analysis of vaccinia virus h7 protein reveals a novel phosphoinositide binding fold essential for poxvirus replication.
J.Virol., 89, 2015

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數據於2024-05-29公開中

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