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PDB: 32 results

5LTL
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BU of 5ltl by Molmil
Structure of human chemokine CCL16
Descriptor: C-C motif chemokine 16, GLYCEROL, SODIUM ION
Authors:Weiergraeber, O.H, Batra-Safferling, R, Haenel, K, Willbold, D.
Deposit date:2016-09-07
Release date:2018-05-09
Last modified:2024-01-17
Method:X-RAY DIFFRACTION (1.45 Å)
Cite:Structure and dynamics of human chemokine CCL16
To Be Published
4CO7
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BU of 4co7 by Molmil
Crystal structure of human GATE-16
Descriptor: GAMMA-AMINOBUTYRIC ACID RECEPTOR-ASSOCIATED PROTEIN-LIKE 2
Authors:Weiergraeber, O.H, Ma, P, Willbold, D.
Deposit date:2014-01-27
Release date:2015-01-14
Last modified:2023-12-20
Method:X-RAY DIFFRACTION (2 Å)
Cite:Conformational Polymorphism in Autophagy-Related Protein Gate-16.
Biochemistry, 54, 2015
3D32
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BU of 3d32 by Molmil
Complex of GABA(A) receptor-associated protein (GABARAP) with a synthetic peptide
Descriptor: CHLORIDE ION, Gamma-aminobutyric acid receptor-associated protein, K1 peptide, ...
Authors:Weiergraeber, O.H, Stangler, T, Willbold, D.
Deposit date:2008-05-09
Release date:2008-08-05
Last modified:2023-08-30
Method:X-RAY DIFFRACTION (1.3 Å)
Cite:Ligand Binding Mode of GABA(A) Receptor-Associated Protein.
J.Mol.Biol., 381, 2008
5C6M
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BU of 5c6m by Molmil
Crystal structure of deoxyribose-phosphate aldolase from Shewanella halifaxensis
Descriptor: CHLORIDE ION, Deoxyribose-phosphate aldolase, SODIUM ION
Authors:Weiergraeber, O.H, Dick, M, Bramski, J, Pietruszka, J.
Deposit date:2015-06-23
Release date:2016-02-03
Last modified:2024-01-10
Method:X-RAY DIFFRACTION (1.76 Å)
Cite:Trading off stability against activity in extremophilic aldolases.
Sci Rep, 6, 2016
5C5Y
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BU of 5c5y by Molmil
Crystal structure of deoxyribose-phosphate aldolase from Colwellia psychrerythraea (hexagonal form)
Descriptor: Deoxyribose-phosphate aldolase, GLYCEROL, UNKNOWN LIGAND
Authors:Weiergraeber, O.H, Dick, M, Pietruszka, J.
Deposit date:2015-06-22
Release date:2016-02-03
Last modified:2024-01-10
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Trading off stability against activity in extremophilic aldolases.
Sci Rep, 6, 2016
5EMU
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BU of 5emu by Molmil
Crystal structure of deoxyribose-phosphate aldolase from Escherichia coli (K58E-Y96W mutant) after acetaldehyde treatment and heating
Descriptor: 1-BUTANOL, 4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID, Deoxyribose-phosphate aldolase
Authors:Weiergraeber, O.H, Dick, M, Pietruszka, J.
Deposit date:2015-11-06
Release date:2016-05-04
Last modified:2024-01-10
Method:X-RAY DIFFRACTION (1.5 Å)
Cite:Mechanism-based inhibition of an aldolase at high concentrations of its natural substrate acetaldehyde: structural insights and protective strategies.
Chem Sci, 7, 2016
5EL1
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BU of 5el1 by Molmil
Crystal structure of deoxyribose-phosphate aldolase from Escherichia coli (K58E-Y96W mutant) after acetaldehyde treatment
Descriptor: 1-BUTANOL, 4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID, Deoxyribose-phosphate aldolase
Authors:Weiergraeber, O.H, Dick, M, Pietruszka, J.
Deposit date:2015-11-04
Release date:2016-05-04
Last modified:2024-10-23
Method:X-RAY DIFFRACTION (1.25 Å)
Cite:Mechanism-based inhibition of an aldolase at high concentrations of its natural substrate acetaldehyde: structural insights and protective strategies.
Chem Sci, 7, 2016
7ZKG
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BU of 7zkg by Molmil
C-Methyltransferase PsmD from Streptomyces griseofuscus with bound cofactor (crystal form 2)
Descriptor: (4S)-2-METHYL-2,4-PENTANEDIOL, Methyltransferase, PHOSPHATE ION, ...
Authors:Weiergraeber, O.H, Amariei, D.A, Pozhydaieva, N, Pietruszka, J.
Deposit date:2022-04-13
Release date:2022-12-28
Last modified:2024-01-31
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Enzymatic C3-Methylation of Indoles Using Methyltransferase PsmD-Crystal Structure, Catalytic Mechanism, and Preparative Applications
Acs Catalysis, 2022
7ZGT
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BU of 7zgt by Molmil
C-Methyltransferase PsmD from Streptomyces griseofuscus (apo form)
Descriptor: FORMIC ACID, Methyltransferase, PHOSPHATE ION, ...
Authors:Weiergraeber, O.H, Amariei, D.A, Pozhydaieva, N, Pietruszka, J.
Deposit date:2022-04-04
Release date:2022-12-28
Last modified:2024-01-31
Method:X-RAY DIFFRACTION (2.05 Å)
Cite:Enzymatic C3-Methylation of Indoles Using Methyltransferase PsmD-Crystal Structure, Catalytic Mechanism, and Preparative Applications
Acs Catalysis, 2022
7ZKH
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BU of 7zkh by Molmil
C-Methyltransferase PsmD from Streptomyces griseofuscus with bound cofactor (crystal form 1)
Descriptor: Methyltransferase, S-ADENOSYL-L-HOMOCYSTEINE, TRIETHYLENE GLYCOL, ...
Authors:Weiergraeber, O.H, Amariei, D.A, Pozhydaieva, N, Pietruszka, J.
Deposit date:2022-04-13
Release date:2022-12-28
Last modified:2024-01-31
Method:X-RAY DIFFRACTION (1.4 Å)
Cite:Enzymatic C3-Methylation of Indoles Using Methyltransferase PsmD-Crystal Structure, Catalytic Mechanism, and Preparative Applications
Acs Catalysis, 2022
8S1M
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BU of 8s1m by Molmil
Crystal structure of human GABARAP fused to EGFR (1076-1099)
Descriptor: CHLORIDE ION, Epidermal growth factor receptor,Gamma-aminobutyric acid receptor-associated protein, GLYCEROL
Authors:Ueffing, A, Willbold, D, Weiergraeber, O.H.
Deposit date:2024-02-15
Release date:2024-08-14
Method:X-RAY DIFFRACTION (2.05 Å)
Cite:Crystal structure of human GABARAP fused to EGFR (1076-1099)
To Be Published
3STO
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BU of 3sto by Molmil
Serpin from the trematode Schistosoma Haematobium
Descriptor: Serine protease inhibitor
Authors:Granzin, J, Weiergraeber, O.H, Lee, X, Blanton, R.E.
Deposit date:2011-07-11
Release date:2012-05-30
Last modified:2013-01-23
Method:X-RAY DIFFRACTION (2.41 Å)
Cite:Three-dimensional structure of a schistosome serpin revealing an unusual configuration of the helical subdomain.
Acta Crystallogr.,Sect.D, 68, 2012
7R5Z
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BU of 7r5z by Molmil
Monocot chimeric jacalin JAC1 from Oryza sativa: dirigent domain (crystal form 1)
Descriptor: CALCIUM ION, CHLORIDE ION, Dirigent protein
Authors:Huwa, N, Classen, T, Weiergraeber, O.H.
Deposit date:2022-02-12
Release date:2022-05-04
Last modified:2024-01-31
Method:X-RAY DIFFRACTION (1.75 Å)
Cite:The Crystal Structure of the Defense Conferring Rice Protein Os JAC1 Reveals a Carbohydrate Binding Site on the Dirigent-like Domain.
Biomolecules, 12, 2022
2NCN
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BU of 2ncn by Molmil
Solution Structure of the Autophagy-Related Protein LC3C
Descriptor: Autophagy-Related Protein LC3C
Authors:Krichel, C, Weiergraeber, O.H, Willbold, D, Neudecker, P.
Deposit date:2016-04-11
Release date:2017-04-19
Last modified:2024-05-15
Method:SOLUTION NMR
Cite:Solution structure of the autophagy-related protein LC3C reveals a polyproline II motif on a mobile tether with phosphorylation site.
Sci Rep, 9, 2019
2IF4
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BU of 2if4 by Molmil
Crystal structure of a multi-domain immunophilin from Arabidopsis thaliana
Descriptor: ATFKBP42
Authors:Granzin, J, Eckhoff, A, Weiergraeber, O.H.
Deposit date:2006-09-20
Release date:2006-10-31
Last modified:2024-02-21
Method:X-RAY DIFFRACTION (2.85 Å)
Cite:Crystal Structure of a Multi-domain Immunophilin from Arabidopsis thaliana: A Paradigm for Regulation of Plant ABC Transporters.
J.Mol.Biol., 364, 2006
4WZG
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BU of 4wzg by Molmil
Structure of human ATG101
Descriptor: Autophagy-related protein 101, BETA-MERCAPTOETHANOL
Authors:Michel, M, Weiergraeber, O.H.
Deposit date:2014-11-19
Release date:2015-06-17
Last modified:2024-04-03
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:The mammalian autophagy initiator complex contains 2 HORMA domain proteins.
Autophagy, 11, 2015
3DOW
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BU of 3dow by Molmil
Complex structure of GABA type A receptor associated protein and its binding epitope on calreticulin
Descriptor: CRT peptide, Gamma-aminobutyric acid receptor-associated protein, ZINC ION
Authors:Thielmann, Y, Weiergraeber, O.H, Willbold, D.
Deposit date:2008-07-07
Release date:2009-02-24
Last modified:2024-10-30
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Structural framework of the GABARAP-calreticulin interface - implications for substrate binding to endoplasmic reticulum chaperones.
Febs J., 276, 2009
7ZKR
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BU of 7zkr by Molmil
Human GABARAP in complex with stapled peptide Pen3-ortho
Descriptor: CHLORIDE ION, Gamma-aminobutyric acid receptor-associated protein, ORTHO-XYLENE, ...
Authors:Ueffing, A, Brown, H, Willbold, D, Kritzer, J.A, Weiergraeber, O.H.
Deposit date:2022-04-13
Release date:2022-08-31
Last modified:2024-01-31
Method:X-RAY DIFFRACTION (1.1 Å)
Cite:Structure-Based Design of Stapled Peptides That Bind GABARAP and Inhibit Autophagy.
J.Am.Chem.Soc., 144, 2022
7ZL7
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BU of 7zl7 by Molmil
Human GABARAP in complex with stapled peptide Pen8-ortho
Descriptor: CHLORIDE ION, Gamma-aminobutyric acid receptor-associated protein, ORTHO-XYLENE, ...
Authors:Ueffing, A, Brown, H, Willbold, D, Kritzer, J.A, Weiergraeber, O.H.
Deposit date:2022-04-14
Release date:2022-08-31
Last modified:2024-01-31
Method:X-RAY DIFFRACTION (1.55 Å)
Cite:Structure-Based Design of Stapled Peptides That Bind GABARAP and Inhibit Autophagy.
J.Am.Chem.Soc., 144, 2022
5EKY
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BU of 5eky by Molmil
Crystal structure of deoxyribose-phosphate aldolase from Escherichia coli (K58E-Y96W mutant)
Descriptor: 1,3-BUTANEDIOL, 4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID, Deoxyribose-phosphate aldolase
Authors:Classen, T, Dick, M, Pietruszka, J, Weiergraeber, O.H.
Deposit date:2015-11-04
Release date:2016-05-04
Last modified:2024-10-23
Method:X-RAY DIFFRACTION (1.1 Å)
Cite:Mechanism-based inhibition of an aldolase at high concentrations of its natural substrate acetaldehyde: structural insights and protective strategies.
Chem Sci, 7, 2016
5C2X
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BU of 5c2x by Molmil
Crystal structure of deoxyribose-phosphate aldolase from Colwellia psychrerythraea (tetragonal form)
Descriptor: CARBONATE ION, Deoxyribose-phosphate aldolase, SULFATE ION, ...
Authors:Dick, M, Weiergraeber, O.H, Pietruszka, J.
Deposit date:2015-06-16
Release date:2016-02-03
Last modified:2024-01-10
Method:X-RAY DIFFRACTION (2.11 Å)
Cite:Trading off stability against activity in extremophilic aldolases.
Sci Rep, 6, 2016
7ONY
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BU of 7ony by Molmil
Crystal structure of PBP3 from P. aeruginosa
Descriptor: 2-(N-MORPHOLINO)-ETHANESULFONIC ACID, DIMETHYL SULFOXIDE, GLYCEROL, ...
Authors:Freischem, S, Grimm, I, Weiergraeber, O.H.
Deposit date:2021-05-26
Release date:2021-08-04
Last modified:2024-01-31
Method:X-RAY DIFFRACTION (1.77 Å)
Cite:Interaction Mode of the Novel Monobactam AIC499 Targeting Penicillin Binding Protein 3 of Gram-Negative Bacteria.
Biomolecules, 11, 2021
7ONO
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BU of 7ono by Molmil
Crystal structure of PBP3 transpeptidase domain from E. coli
Descriptor: Peptidoglycan D,D-transpeptidase FtsI, trimethylamine oxide
Authors:Freischem, S, Grimm, I, Weiergraeber, O.H.
Deposit date:2021-05-25
Release date:2021-08-04
Last modified:2024-01-31
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Interaction Mode of the Novel Monobactam AIC499 Targeting Penicillin Binding Protein 3 of Gram-Negative Bacteria.
Biomolecules, 11, 2021
7ONZ
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BU of 7onz by Molmil
Crystal structure of PBP3 from P. aeruginosa
Descriptor: GLYCEROL, Peptidoglycan D,D-transpeptidase FtsI
Authors:Freischem, S, Grimm, I, Weiergraeber, O.H.
Deposit date:2021-05-26
Release date:2021-08-04
Last modified:2024-01-31
Method:X-RAY DIFFRACTION (1.86 Å)
Cite:Interaction Mode of the Novel Monobactam AIC499 Targeting Penicillin Binding Protein 3 of Gram-Negative Bacteria.
Biomolecules, 11, 2021
7ONW
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BU of 7onw by Molmil
Crystal structure of PBP3 from E. coli in complex with AIC499
Descriptor: (2S)-2-[(Z)-[1-(2-azanyl-1,3-thiazol-4-yl)-2-[[(2S)-3-methyl-1-oxidanylidene-3-(sulfooxyamino)butan-2-yl]amino]-2-oxidanylidene-ethylidene]amino]oxy-3-[4-[N-[(3R)-piperidin-3-yl]carbamimidoyl]phenoxy]propanoic acid, (4S)-2-METHYL-2,4-PENTANEDIOL, PHOSPHATE ION, ...
Authors:Freischem, S, Grimm, I, Weiergraeber, O.H.
Deposit date:2021-05-26
Release date:2021-08-04
Last modified:2024-10-23
Method:X-RAY DIFFRACTION (2.7 Å)
Cite:Interaction Mode of the Novel Monobactam AIC499 Targeting Penicillin Binding Protein 3 of Gram-Negative Bacteria.
Biomolecules, 11, 2021

 

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