Loading
PDBj
MenuPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help
PDB: 236 results

6IXT
DownloadVisualize
BU of 6ixt by Molmil
Crystal structure of isocitrate dehydrogenase from Ostreococcus tauri in complex with NAD+ and Mg2+
Descriptor: GLYCEROL, Isocitrate dehydrogenase, MAGNESIUM ION, ...
Authors:Zhu, G.P, Tang, W.G, Wang, P.
Deposit date:2018-12-12
Release date:2019-12-18
Last modified:2024-03-27
Method:X-RAY DIFFRACTION (1.78 Å)
Cite:Crystal structures of NAD + -linked isocitrate dehydrogenase from the green alga Ostreococcus tauri and its evolutionary relationship with eukaryotic NADP + -linked homologs.
Arch.Biochem.Biophys., 708, 2021
4GUT
DownloadVisualize
BU of 4gut by Molmil
Crystal structure of LSD2-NPAC
Descriptor: FLAVIN-ADENINE DINUCLEOTIDE, GLYCEROL, Lysine-specific histone demethylase 1B, ...
Authors:Chen, F, Dong, Z, Fang, J, Yang, Y, Li, Z, Xu, Y, Yang, H, Wang, P, Fang, R, Shi, Y, Xu, Y.
Deposit date:2012-08-29
Release date:2013-01-16
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (1.998 Å)
Cite:LSD2/KDM1B and its cofactor NPAC/GLYR1 endow a structural and molecular model for regulation of H3K4 demethylation
Mol.Cell, 49, 2013
4GUU
DownloadVisualize
BU of 4guu by Molmil
Crystal structure of LSD2-NPAC with tranylcypromine
Descriptor: Lysine-specific histone demethylase 1B, Putative oxidoreductase GLYR1, ZINC ION, ...
Authors:Chen, F, Dong, Z, Fang, J, Yang, Y, Li, Z, Xu, Y, Yang, H, Wang, P, Xu, Y.
Deposit date:2012-08-29
Release date:2013-01-16
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (2.302 Å)
Cite:LSD2/KDM1B and its cofactor NPAC/GLYR1 endow a structural and molecular model for regulation of H3K4 demethylation
Mol.Cell, 49, 2013
4GUR
DownloadVisualize
BU of 4gur by Molmil
Crystal structure of LSD2-NPAC with H3 in space group P21
Descriptor: FLAVIN-ADENINE DINUCLEOTIDE, GLYCEROL, Histone H3.3, ...
Authors:Chen, F, Dong, Z, Fang, J, Yang, Y, Li, Z, Xu, Y, Yang, H, Wang, P, Fang, R, Shi, Y, Xu, Y.
Deposit date:2012-08-29
Release date:2013-01-16
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (2.506 Å)
Cite:LSD2/KDM1B and its cofactor NPAC/GLYR1 endow a structural and molecular model for regulation of H3K4 demethylation
Mol.Cell, 49, 2013
4E6N
DownloadVisualize
BU of 4e6n by Molmil
Crystal structure of bacterial Pnkp-C/Hen1-N heterodimer
Descriptor: ADENOSINE MONOPHOSPHATE, MAGNESIUM ION, Metallophosphoesterase, ...
Authors:Huang, R.H, Wang, P.
Deposit date:2012-03-15
Release date:2012-08-01
Last modified:2024-02-28
Method:X-RAY DIFFRACTION (2.39 Å)
Cite:Molecular basis of bacterial protein Hen1 activating the ligase activity of bacterial protein Pnkp for RNA repair.
Proc.Natl.Acad.Sci.USA, 109, 2012
7F8T
DownloadVisualize
BU of 7f8t by Molmil
Re-refinement of the 2XRY X-ray structure of archaeal class II CPD photolyase from Methanosarcina mazei
Descriptor: Deoxyribodipyrimidine photolyase, FLAVIN-ADENINE DINUCLEOTIDE, GLYCEROL, ...
Authors:Maestre-Reyna, M, Yang, C.-H, Huang, W.C, Nango, E, Gusti-Ngurah-Putu, E.-P, Franz-Badur, S, Wu, W.-J, Wu, H.-Y, Wang, P.-H, Liao, J.-H, Lee, C.-C, Huang, K.-F, Chang, Y.-K, Weng, J.-H, Sugahara, M, Owada, S, Joti, Y, Tanaka, R, Tono, K, Kiontke, S, Yamamoto, J, Iwata, S, Essen, L.-O, Bessho, Y, Tsai, M.-D.
Deposit date:2021-07-02
Release date:2022-03-09
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (1.5 Å)
Cite:Serial crystallography captures dynamic control of sequential electron and proton transfer events in a flavoenzyme.
Nat.Chem., 14, 2022
7C8G
DownloadVisualize
BU of 7c8g by Molmil
Structure of alginate lyase AlyC3
Descriptor: Alginate lyase AlyC3, GLYCEROL, SUCCINIC ACID
Authors:Zhang, Y.Z, Xu, F, Chen, X.L, Wang, P.
Deposit date:2020-05-30
Release date:2020-10-07
Last modified:2020-12-16
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Structural and molecular basis for the substrate positioning mechanism of a new PL7 subfamily alginate lyase from the arctic.
J.Biol.Chem., 295, 2020
4NM6
DownloadVisualize
BU of 4nm6 by Molmil
Crystal structure of TET2-DNA complex
Descriptor: 5'-D(*AP*CP*CP*AP*CP*(5CM)P*GP*GP*TP*GP*GP*T)-3', FE (II) ION, Methylcytosine dioxygenase TET2, ...
Authors:Hu, L, Li, Z, Cheng, J, Rao, Q, Gong, W, Liu, M, Wang, P, Xu, Y.
Deposit date:2013-11-14
Release date:2013-12-18
Last modified:2024-02-28
Method:X-RAY DIFFRACTION (2.026 Å)
Cite:Crystal Structure of TET2-DNA Complex: Insight into TET-Mediated 5mC Oxidation.
Cell(Cambridge,Mass.), 155, 2013
4DQZ
DownloadVisualize
BU of 4dqz by Molmil
Crystal Structure of C-terminal Half of Bacterial Hen1
Descriptor: Methyltransferase type 12
Authors:Huang, R.H, Wang, P.
Deposit date:2012-02-16
Release date:2012-08-01
Last modified:2024-02-28
Method:X-RAY DIFFRACTION (2.301 Å)
Cite:Molecular basis of bacterial protein Hen1 activating the ligase activity of bacterial protein Pnkp for RNA repair.
Proc.Natl.Acad.Sci.USA, 109, 2012
4DRF
DownloadVisualize
BU of 4drf by Molmil
Crystal Structure of Bacterial Pnkp-C/Hen1-N Heterodimer
Descriptor: GLYCEROL, Metallophosphoesterase, Methyltransferase type 12
Authors:Huang, R.H, Wang, P.
Deposit date:2012-02-17
Release date:2012-08-01
Last modified:2024-02-28
Method:X-RAY DIFFRACTION (2.6 Å)
Cite:Molecular basis of bacterial protein Hen1 activating the ligase activity of bacterial protein Pnkp for RNA repair.
Proc.Natl.Acad.Sci.USA, 109, 2012
4D6V
DownloadVisualize
BU of 4d6v by Molmil
Crystal structure of signal transducing protein
Descriptor: G PROTEIN BETA SUBUNIT GIB2
Authors:Ero, R, Dimitrova, V.T, Chen, Y, Bu, W, Feng, S, Liu, T, Wang, P, Xue, C, Tan, S.M, Gao, Y.G.
Deposit date:2014-11-17
Release date:2015-03-18
Last modified:2023-12-20
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Crystal Structure of Gib2, a Signal-Transducing Protein Scaffold Associated with Ribosomes in Cryptococcus Neoformans.
Sci.Rep., 5, 2015
5GXF
DownloadVisualize
BU of 5gxf by Molmil
Acryloyl-CoA reductase AcuI from Ruegeria pomeroyi DSS-3
Descriptor: Acrylyl-CoA reductase AcuI, BROMIDE ION
Authors:Zhang, Y.Z, Wang, P, Cao, H.Y.
Deposit date:2016-09-17
Release date:2017-09-20
Last modified:2024-03-20
Method:X-RAY DIFFRACTION (2.288 Å)
Cite:Acryloyl-CoA reductase AcuI from Ruegeria pomeroyi DSS-3
To Be Published
5GXE
DownloadVisualize
BU of 5gxe by Molmil
Crystal structure of Acryloyl-CoA reductase AcuI in complex with NADPH
Descriptor: Acrylyl-CoA reductase AcuI, NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE
Authors:Zhang, Y.Z, Wang, P, Cao, H.Y.
Deposit date:2016-09-17
Release date:2017-09-20
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (1.696 Å)
Cite:Crystal structure of Acryloyl-CoA reductase AcuI in complex with NADPH
To Be Published
7C8F
DownloadVisualize
BU of 7c8f by Molmil
Structure of alginate lyase AlyC3 in complex with dimannuronate(2M)
Descriptor: H127A/Y244A mutant of alginate lyase AlyC3 in complex with dimannuronate, MALONATE ION, beta-D-mannopyranuronic acid-(1-4)-beta-D-mannopyranuronic acid
Authors:Zhang, Y.Z, Xu, F, Chen, X.L, Wang, P.
Deposit date:2020-05-30
Release date:2020-10-07
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (1.461 Å)
Cite:Structural and molecular basis for the substrate positioning mechanism of a new PL7 subfamily alginate lyase from the arctic.
J.Biol.Chem., 295, 2020
5GXD
DownloadVisualize
BU of 5gxd by Molmil
Structure of acryloyl-CoA lyase PrpE from Dinoroseobacter shibae DFL 12
Descriptor: ACRYLIC ACID, ADENOSINE MONOPHOSPHATE, AMP-dependent synthetase and ligase, ...
Authors:Zhang, Y.Z, Wang, P, Cao, H.Y.
Deposit date:2016-09-17
Release date:2017-09-20
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (2.001 Å)
Cite:Structure of acryloyl-CoA lyase PrpE from Dinoroseobacter shibae DFL 12
To Be Published
3PEL
DownloadVisualize
BU of 3pel by Molmil
Structure of Greyhound Hemoglobin: Origin of High Oxygen Affinity
Descriptor: Hemoglobin subunit alpha, Hemoglobin subunit beta, PROTOPORPHYRIN IX CONTAINING FE
Authors:Bhatt, V.S, Zaldivar-Lopez, S, Harris, D.R, Couto, C.G, Wang, P.G, Palmer, A.F.
Deposit date:2010-10-26
Release date:2010-11-03
Last modified:2023-09-06
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Structure of Greyhound hemoglobin: origin of high oxygen affinity.
Acta Crystallogr.,Sect.D, 67, 2011
3RUE
DownloadVisualize
BU of 3rue by Molmil
Alternative analogs as viable substrates of UDP-hexose 4-epimerases
Descriptor: NICOTINAMIDE-ADENINE-DINUCLEOTIDE, UNKNOWN LIGAND, WbgU
Authors:Bhatt, V.S, Guan, W, Wang, P.G.
Deposit date:2011-05-05
Release date:2011-05-25
Last modified:2023-09-13
Method:X-RAY DIFFRACTION (2.8 Å)
Cite:Alternative analogs as viable substrates of UDP-hexose 4-epimerases
TO BE PUBLISHED
3RUA
DownloadVisualize
BU of 3rua by Molmil
Specific recognition of N-acetylated substrates and domain flexibility in WbgU: a UDP-GalNAc 4-epimerase
Descriptor: NICOTINAMIDE-ADENINE-DINUCLEOTIDE, SULFATE ION, UNKNOWN LIGAND, ...
Authors:Bhatt, V.S, Guan, W, Wang, P.G.
Deposit date:2011-05-04
Release date:2011-05-25
Last modified:2023-09-13
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Specific recognition of N-acetylated substrates and domain flexibility in WbgU: a UDP-GalNAc 4-epimerase
TO BE PUBLISHED
3RUF
DownloadVisualize
BU of 3ruf by Molmil
Alternative analogs as viable substrates of UDP-hexose 4-epimerases
Descriptor: NICOTINAMIDE-ADENINE-DINUCLEOTIDE, SULFATE ION, URIDINE-5'-DIPHOSPHATE, ...
Authors:Bhatt, V.S, Guan, W, Wang, P.G.
Deposit date:2011-05-05
Release date:2011-05-25
Last modified:2024-02-28
Method:X-RAY DIFFRACTION (2 Å)
Cite:Alternative analogs as viable substrates of UDP-hexose 4-epimerases
TO BE PUBLISHED
3RU9
DownloadVisualize
BU of 3ru9 by Molmil
Specific recognition of N-acetylated substrates and domain flexibility in WbgU: a UDP-GalNAc 4-epimerase
Descriptor: GLYCINE, NICOTINAMIDE-ADENINE-DINUCLEOTIDE, SULFATE ION, ...
Authors:Bhatt, V.S, Guan, W, Wang, P.G.
Deposit date:2011-05-04
Release date:2011-05-25
Last modified:2023-09-13
Method:X-RAY DIFFRACTION (2.21 Å)
Cite:Specific recognition of N-acetylated substrates and domain flexibility in WbgU: a UDP-GalNAc 4-epimerase
TO BE PUBLISHED
3RUH
DownloadVisualize
BU of 3ruh by Molmil
Alternative analogs as viable substrates of UDP-hexose 4-epimerases
Descriptor: NICOTINAMIDE-ADENINE-DINUCLEOTIDE, SODIUM ION, SULFATE ION, ...
Authors:Bhatt, V.S, Guan, W, Wang, P.G.
Deposit date:2011-05-05
Release date:2011-05-25
Last modified:2023-09-13
Method:X-RAY DIFFRACTION (2.88 Å)
Cite:Alternative analogs as viable substrates of UDP-hexose 4-epimerases
TO BE PUBLISHED
4OCZ
DownloadVisualize
BU of 4ocz by Molmil
Crystal structure of human soluble epoxide hydrolase complexed with 1-(1-isobutyrylpiperidin-4-yl)-3-(4-(trifluoromethyl)phenyl)urea
Descriptor: 1-[1-(2-methylpropanoyl)piperidin-4-yl]-3-[4-(trifluoromethyl)phenyl]urea, Bifunctional epoxide hydrolase 2, MAGNESIUM ION, ...
Authors:Lee, K.S.S, Liu, J, Wagner, K.M, Pakhomova, S, Dong, H, Morriseau, C, Fu, S.H, Yang, J, Wang, P, Ulu, A, Mate, C, Nguyen, L, Wullf, H, Eldin, M.L, Mara, A.A, Newcomer, M.E, Zeldin, D.C, Hammock, B.D.
Deposit date:2014-01-09
Release date:2014-09-24
Last modified:2023-09-20
Method:X-RAY DIFFRACTION (2.94 Å)
Cite:Optimized inhibitors of soluble epoxide hydrolase improve in vitro target residence time and in vivo efficacy.
J.Med.Chem., 57, 2014
3RUD
DownloadVisualize
BU of 3rud by Molmil
Alternative analogs as viable substrates of UDP-hexose 4-epimerases
Descriptor: NICOTINAMIDE-ADENINE-DINUCLEOTIDE, UNKNOWN LIGAND, WbgU
Authors:Bhatt, V.S, Guan, W, Wang, P.G.
Deposit date:2011-05-05
Release date:2011-05-25
Last modified:2023-09-13
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Alternative analogs as viable substrates of UDP-hexose 4-epimerases
TO BE PUBLISHED
3RUC
DownloadVisualize
BU of 3ruc by Molmil
Specific recognition of N-acetylated substrates and domain flexibility in WbgU: a UDP-GalNAc 4-epimerase
Descriptor: NICOTINAMIDE-ADENINE-DINUCLEOTIDE, SULFATE ION, URIDINE-DIPHOSPHATE-N-ACETYLGALACTOSAMINE, ...
Authors:Bhatt, V.S, Guan, W, Wang, P.G.
Deposit date:2011-05-04
Release date:2011-05-25
Last modified:2023-09-13
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Specific recognition of N-acetylated substrates and domain flexibility in WbgU: a UDP-GalNAc 4-epimerase
TO BE PUBLISHED
4OD0
DownloadVisualize
BU of 4od0 by Molmil
Crystal structure of human soluble epoxide hydrolase complexed with 1-(1-propanoylpiperidin-4-yl)-3-[4-(trifluoromethoxy)phenyl]urea
Descriptor: 1-(1-propanoylpiperidin-4-yl)-3-[4-(trifluoromethoxy)phenyl]urea, Bifunctional epoxide hydrolase 2, MAGNESIUM ION, ...
Authors:Lee, K.S.S, Liu, J, Wagner, K.M, Pakhomova, S, Dong, H, Morisseau, C, Fu, S.H, Yang, J, Wang, P, Ulu, A, Mate, C, Nguyen, L, Wullf, H, Eldin, M.L, Mara, A.A, Newcomer, M.E, Zeldin, D.C, Hammock, B.D.
Deposit date:2014-01-09
Release date:2014-09-24
Last modified:2023-09-20
Method:X-RAY DIFFRACTION (2.92 Å)
Cite:Optimized inhibitors of soluble epoxide hydrolase improve in vitro target residence time and in vivo efficacy.
J.Med.Chem., 57, 2014

222624

PDB entries from 2024-07-17

PDB statisticsPDBj update infoContact PDBjnumon