Loading
PDBj
MenuPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help
PDB: 631 results

3WLD
DownloadVisualize
BU of 3wld by Molmil
Crystal structure of monomeric GCaMP6m
Descriptor: CALCIUM ION, Myosin light chain kinase, Green fluorescent protein, ...
Authors:Ding, J, Luo, A.F, Hu, L.Y, Wang, D.C, Shao, F.
Deposit date:2013-11-08
Release date:2014-01-22
Last modified:2023-12-06
Method:X-RAY DIFFRACTION (2.7 Å)
Cite:Structural basis of the ultrasensitive calcium indicator GCaMP6.
Sci China Life Sci, 57, 2014
6IYW
DownloadVisualize
BU of 6iyw by Molmil
Crystal sturucture of L,D-transpeptidase LdtMt2 from Mycobacterium tuberculosis in complex with Imipenem adduct
Descriptor: (5R)-5-[(1S,2R)-1-formyl-2-hydroxypropyl]-3-[(2-{[(E)-iminomethyl]amino}ethyl)sulfanyl]-4,5-dihydro-1H-pyrrole-2-carbox ylic acid, GLYCEROL, L,D-transpeptidase 2
Authors:Li, D.F, Zhao, F, Wang, D.C.
Deposit date:2018-12-17
Release date:2019-02-27
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (1.6 Å)
Cite:The 1-beta-methyl group confers a lower affinity of l,d-transpeptidase LdtMt2 for ertapenem than for imipenem.
Biochem. Biophys. Res. Commun., 510, 2019
3DTO
DownloadVisualize
BU of 3dto by Molmil
Crystal structure of the metal-dependent HD domain-containing hydrolase BH2835 from Bacillus halodurans, Northeast Structural Genomics Consortium Target BhR130.
Descriptor: BH2835 protein
Authors:Forouhar, F, Su, M, Seetharaman, J, Janjua, H, Fang, Y, Xiao, R, Cunningham, K, Ma, L.-C, Owen, L.A, Wang, D, Tong, S, Everett, J.K, Acton, T.B, Montelione, G.T, Tong, L, Hunt, J.F, Northeast Structural Genomics Consortium (NESG)
Deposit date:2008-07-15
Release date:2008-09-09
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (3.3 Å)
Cite:Crystal structure of the metal-dependent HD domain-containing hydrolase BH2835 from Bacillus halodurans, Northeast Structural Genomics Consortium Target BhR130.
To be Published
7RIL
DownloadVisualize
BU of 7ril by Molmil
Crystal structure of hairpin polyamide Py-Im 1 bound to 5' CCTGACCAGG
Descriptor: 3-({3-[(3-{[4-({4-[(4-{[4-({(2R)-2-amino-4-[(1-methyl-4-{[1-methyl-4-({1-methyl-4-[(1-methyl-1H-imidazole-2-carbonyl)amino]-1H-imidazole-2-carbonyl}amino)-1H-pyrrole-2-carbonyl]amino}-1H-pyrrole-2-carbonyl)amino]butanoyl}amino)-1-methyl-1H-imidazole-2-carbonyl]amino}-1-methyl-1H-pyrrole-2-carbonyl)amino]-1-methyl-1H-pyrrole-2-carbonyl}amino)-1-methyl-1H-pyrrole-2-carbonyl]amino}propyl)(methyl)amino]propyl}carbamoyl)benzoic acid, ACETATE ION, non-template DNA, ...
Authors:Oh, J, Dervan, P.B, Wang, D.
Deposit date:2021-07-20
Release date:2022-01-12
Last modified:2024-04-03
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:RNA polymerase II trapped on a molecular treadmill: Structural basis of persistent transcriptional arrest by a minor groove DNA binder.
Proc.Natl.Acad.Sci.USA, 119, 2022
5T0U
DownloadVisualize
BU of 5t0u by Molmil
CTCF ZnF2-7 and DNA complex structure
Descriptor: DNA (5'-D(*CP*CP*TP*CP*AP*CP*TP*AP*GP*CP*GP*CP*CP*CP*CP*CP*TP*GP*CP*TP*GP*GP*C)-3'), DNA (5'-D(*GP*CP*CP*AP*GP*CP*AP*GP*GP*GP*GP*GP*CP*GP*CP*TP*AP*GP*TP*GP*AP*GP*G)-3'), Transcriptional repressor CTCF, ...
Authors:Hashimoto, H, Wang, D, Cheng, X.
Deposit date:2016-08-16
Release date:2017-05-24
Last modified:2024-03-06
Method:X-RAY DIFFRACTION (3.199 Å)
Cite:Structural Basis for the Versatile and Methylation-Dependent Binding of CTCF to DNA.
Mol. Cell, 66, 2017
3C0D
DownloadVisualize
BU of 3c0d by Molmil
Crystal structure of the putative nitrite reductase NADPH (small subunit) oxidoreductase protein Q87HB1. Northeast Structural Genomics Consortium target VpR162
Descriptor: Putative nitrite reductase NADPH (Small subunit) oxidoreductase protein
Authors:Kuzin, A.P, Abashidze, M, Seetharaman, J, Vorobiev, S.M, Wang, D, Fang, Y, Owens, L, Ma, L.-C, Xiao, R, Liu, J, Baran, M.C, Acton, T.B, Rost, B, Montelione, G.T, Tong, L, Hunt, J.F, Northeast Structural Genomics Consortium (NESG)
Deposit date:2008-01-19
Release date:2008-03-04
Last modified:2018-01-24
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:Crystal structure of the putative nitrite reductase NADPH (small subunit) oxidoreductase protein Q87HB1.
To be Published
5C65
DownloadVisualize
BU of 5c65 by Molmil
Structure of the human glucose transporter GLUT3 / SLC2A3
Descriptor: CHOLESTEROL HEMISUCCINATE, Octyl Glucose Neopentyl Glycol, Solute carrier family 2, ...
Authors:Pike, A.C.W, Quigley, A, Chu, A, Tessitore, A, Xia, X, Mukhopadhyay, S, Wang, D, Kupinska, K, Strain-Damerell, C, Chalk, R, Burgess-Brown, N.A, Edwards, A.M, Arrowsmith, C.H, Bountra, C, Carpenter, E.P, Structural Genomics Consortium (SGC)
Deposit date:2015-06-22
Release date:2015-07-08
Last modified:2024-01-10
Method:X-RAY DIFFRACTION (2.65 Å)
Cite:Structure of the human glucose transporter GLUT3 / SLC2A3
To Be Published
3ZRE
DownloadVisualize
BU of 3zre by Molmil
Reduced Thiol peroxidase (Tpx) from yersinia Pseudotuberculosis
Descriptor: THIOL PEROXIDASE
Authors:Gabrielsen, M, Zetterstrom, C.E, Wang, D, Elofsson, M, Roe, A.J.
Deposit date:2011-06-15
Release date:2012-03-14
Last modified:2023-12-20
Method:X-RAY DIFFRACTION (2.35 Å)
Cite:Structural Characterisation of Tpx from Yersinia Pseudotuberculosis Reveals Insights Into the Binding of Salicylidene Acylhydrazide Compounds.
Plos One, 7, 2012
3DEV
DownloadVisualize
BU of 3dev by Molmil
Crystal structure of SH1221 protein from Staphylococcus haemolyticus, Northeast Structural Genomics Consortium Target ShR87
Descriptor: MAGNESIUM ION, SH1221, SULFATE ION
Authors:Forouhar, F, Neely, H, Seetharaman, J, Mao, L, Xiao, R, Ciccosanti, C, Foote, E.L, Wang, D, Everett, J.K, Acton, T.B, Montelione, G.T, Tong, L, Hunt, J.F, Northeast Structural Genomics Consortium (NESG)
Deposit date:2008-06-10
Release date:2008-08-05
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (3.1 Å)
Cite:Crystal structure of SH1221 protein from Staphylococcus haemolyticus, Northeast Structural Genomics Consortium Target ShR87
To be Published
1PW4
DownloadVisualize
BU of 1pw4 by Molmil
Crystal Structure of the Glycerol-3-Phosphate Transporter from E.Coli
Descriptor: Glycerol-3-phosphate transporter
Authors:Huang, Y, Lemieux, M.J, Song, J, Auer, M, Wang, D.N.
Deposit date:2003-06-30
Release date:2003-08-05
Last modified:2024-02-14
Method:X-RAY DIFFRACTION (3.3 Å)
Cite:Structure and Mechanism of the Glycerol-3-Phosphate Transporter from Escherichia Coli
Science, 301, 2003
3ZRD
DownloadVisualize
BU of 3zrd by Molmil
Oxidised Thiol peroxidase (Tpx) from Yersinia pseudotuberculosis
Descriptor: THIOL PEROXIDASE
Authors:Gabrielsen, M, Zetterstrom, C.E, Wang, D, Elofsson, M, Roe, A.J.
Deposit date:2011-06-15
Release date:2012-03-14
Last modified:2023-12-20
Method:X-RAY DIFFRACTION (1.74 Å)
Cite:Structural Characterisation of Tpx from Yersinia Pseudotuberculosis Reveals Insights Into the Binding of Salicylidene Acylhydrazide Compounds.
Plos One, 7, 2012
3BDR
DownloadVisualize
BU of 3bdr by Molmil
Crystal structure of fatty acid-binding protein-like Ycf58 from Thermosynecoccus elongatus. Northeast Structural Genomics Consortium target TeR13.
Descriptor: PHOSPHATE ION, Ycf58 protein
Authors:Kuzin, A.P, Su, M, Seetharaman, J, Forouhar, F, Wang, D, Janjua, H, Cunningham, K, Ma, L.-C, Xiao, R, Liu, J, Baran, M.C, Acton, T.B, Rost, B, Montelione, G.T, Tong, L, Hunt, J.F, Northeast Structural Genomics Consortium (NESG)
Deposit date:2007-11-15
Release date:2007-11-27
Last modified:2018-01-24
Method:X-RAY DIFFRACTION (2.8 Å)
Cite:The crystal structure of fatty acid-binding protein-like Ycf58 from Thermosynecoccus elongatus.
To be Published
4ES7
DownloadVisualize
BU of 4es7 by Molmil
crystal structure of protein HC from Homo sapiens at 2 angstrom
Descriptor: DI(HYDROXYETHYL)ETHER, Protein AMBP
Authors:Zhang, Y.L, Gao, Z.Q, Wang, D.Q, Dong, Y.H.
Deposit date:2012-04-22
Release date:2013-04-24
Method:X-RAY DIFFRACTION (2.001 Å)
Cite:crystal structure of protein HC from Home sapiens at 2 angstrom
To be Published
2YJH
DownloadVisualize
BU of 2yjh by Molmil
Thiol Peroxidase from Yersinia Psuedotuberculosis, inactive mutant C61S
Descriptor: THIOL PEROXIDASE
Authors:Beckham, K.S.H, Gabrielsen, M, Wang, D, Roe, A.J.
Deposit date:2011-05-19
Release date:2012-03-14
Last modified:2023-12-20
Method:X-RAY DIFFRACTION (2.55 Å)
Cite:Structural Characterisation of Tpx from Yersinia Pseudotuberculosis Reveals Insights Into the Binding of Salicylidene Acylhydrazide Compounds.
Plos One, 7, 2012
3DR5
DownloadVisualize
BU of 3dr5 by Molmil
Crystal structure of the Q8NRD3_CORGL protein from Corynebacterium glutamicum. Northeast Structural Genomics Consortium target CgR117.
Descriptor: Putative O-Methyltransferase
Authors:Vorobiev, S.M, Su, M, Seetharaman, J, Wang, D, Ciccosanti, C, Foote, E.L, Mao, L, Xiao, R, Acton, T.B, Montelione, G.T, Hunt, J.F, Tong, L, Northeast Structural Genomics Consortium (NESG)
Deposit date:2008-07-10
Release date:2008-09-09
Last modified:2017-10-25
Method:X-RAY DIFFRACTION (2.25 Å)
Cite:Crystal structure of the Q8NRD3_CORGL protein from Corynebacterium glutamicum.
To be Published
5T00
DownloadVisualize
BU of 5t00 by Molmil
Human CTCF ZnF3-7 and methylated DNA complex
Descriptor: DNA (5'-GCCAGCAGGGGG(5CM)GCTA-3'), DNA (5'-TAG(5CM)GCCCCCTGCTGGC-3'), Transcriptional repressor CTCF, ...
Authors:Hashimoto, H, Wang, D, Cheng, X.
Deposit date:2016-08-15
Release date:2017-05-24
Last modified:2023-10-04
Method:X-RAY DIFFRACTION (2.19 Å)
Cite:Structural Basis for the Versatile and Methylation-Dependent Binding of CTCF to DNA.
Mol. Cell, 66, 2017
5HDK
DownloadVisualize
BU of 5hdk by Molmil
Crystal structure of heat shock factor 2-DBD
Descriptor: CHLORIDE ION, Heat shock factor protein 2, POTASSIUM ION, ...
Authors:Feng, H, Liu, W, Wang, D.C.
Deposit date:2016-01-05
Release date:2017-01-11
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (1.32 Å)
Cite:HSF1-DBD crystal structure
To Be Published
5HDN
DownloadVisualize
BU of 5hdn by Molmil
Crystal structure of heat shock factor1-DBD complex with ds-DNA and TtT
Descriptor: CITRIC ACID, DNA (5'-D(*GP*GP*TP*TP*CP*TP*AP*GP*AP*AP*CP*C)-3'), Heat shock factor protein 1, ...
Authors:Feng, H, Liu, W, Wang, D.C.
Deposit date:2016-01-05
Release date:2017-01-11
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (1.68 Å)
Cite:HSF1-DBD crystal structure
To Be Published
4FGM
DownloadVisualize
BU of 4fgm by Molmil
Crystal structure of the aminopeptidase N family protein Q5QTY1 from Idiomarina loihiensis. Northeast Structural Genomics Consortium Target IlR60.
Descriptor: Aminopeptidase N family protein, MALEIC ACID, ZINC ION
Authors:Vorobiev, S, Su, M, Tong, T, Kohan, E, Wang, D, Everett, J.K, Acton, T.B, Montelione, G.T, Tong, L, Hunt, J.F, Northeast Structural Genomics Consortium (NESG)
Deposit date:2012-06-04
Release date:2012-08-01
Last modified:2017-10-25
Method:X-RAY DIFFRACTION (2.394 Å)
Cite:Crystal structure of the aminopeptidase N family protein Q5QTY1 from Idiomarina loihiensis.
To be Published
3EW7
DownloadVisualize
BU of 3ew7 by Molmil
Crystal structure of the Lmo0794 protein from Listeria monocytogenes. Northeast Structural Genomics Consortium target LmR162.
Descriptor: Lmo0794 protein
Authors:Vorobiev, S.M, Abashidze, M, Seetharaman, J, Wang, D, Foote, E.L, Ciccosanti, C, Janjua, H, Xiao, R, Acton, T.B, Montelione, G.T, Tong, L, Hunt, J.F, Northeast Structural Genomics Consortium (NESG)
Deposit date:2008-10-14
Release date:2008-11-11
Last modified:2023-12-27
Method:X-RAY DIFFRACTION (2.73 Å)
Cite:Crystal structure of the Lmo0794 protein from Listeria monocytogenes.
To be Published
6IYV
DownloadVisualize
BU of 6iyv by Molmil
Crystal sturucture of L,D-transpeptidase LdtMt2 from Mycobacterium tuberculosis in complex with ertapenem adduct
Descriptor: (2S,3R,4S)-4-({(3S,5S)-5-[(3-carboxyphenyl)carbamoyl]pyrrolidin-3-yl}sulfanyl)-2-[(1S,2R)-1-formyl-2-hydroxypropyl]-3-methyl-3,4-dihydro-2H-pyrrole-5-carboxylic acid, 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL, DI(HYDROXYETHYL)ETHER, ...
Authors:Zhao, F, Li, D.F, Wang, D.C.
Deposit date:2018-12-17
Release date:2019-02-27
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (1.5 Å)
Cite:The 1-beta-methyl group confers a lower affinity of l,d-transpeptidase LdtMt2for ertapenem than for imipenem.
Biochem. Biophys. Res. Commun., 510, 2019
2J1T
DownloadVisualize
BU of 2j1t by Molmil
Structure of a Streptococcus pneumoniae fucose binding module in complex with the Lewis Y antigen
Descriptor: CALCIUM ION, FUCOLECTIN-RELATED PROTEIN, alpha-L-fucopyranose-(1-2)-beta-D-galactopyranose-(1-4)-[alpha-L-fucopyranose-(1-3)]2-acetamido-2-deoxy-beta-D-glucopyranose
Authors:Boraston, A.B, Wang, D, Burke, R.D.
Deposit date:2006-08-15
Release date:2006-09-06
Last modified:2024-05-08
Method:X-RAY DIFFRACTION (1.6 Å)
Cite:Blood Group Antigen Recognition by a Streptococcus Pneumoniae Virulence Factor
J.Biol.Chem., 281, 2006
2J1U
DownloadVisualize
BU of 2j1u by Molmil
Structure of a Streptococcus pneumoniae fucose binding module in complex with the blood group A-tetrasaccharide
Descriptor: CALCIUM ION, FUCOLECTIN-RELATED PROTEIN, alpha-L-fucopyranose-(1-2)-[2-acetamido-2-deoxy-alpha-D-galactopyranose-(1-3)]beta-D-galactopyranose-(1-4)-beta-D-glucopyranose
Authors:Boraston, A.B, Wang, D, Burke, R.D.
Deposit date:2006-08-15
Release date:2006-09-06
Last modified:2024-05-08
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Blood Group Antigen Recognition by a Streptococcus Pneumoniae Virulence Factor
J.Biol.Chem., 281, 2006
2J44
DownloadVisualize
BU of 2j44 by Molmil
Alpha-glucan binding by a streptococcal virulence factor
Descriptor: ALKALINE AMYLOPULLULANASE, ZINC ION, alpha-D-glucopyranose-(1-4)-alpha-D-glucopyranose-(1-4)-alpha-D-glucopyranose, ...
Authors:Lammerts van Bueren, A, Higgins, M, Wang, D, Burke, R.D, Boraston, A.B.
Deposit date:2006-08-24
Release date:2006-12-11
Last modified:2023-12-13
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Identification and Structural Basis of Binding to Host Lung Glycogen by Streptococcal Virulence Factors.
Nat.Struct.Mol.Biol., 14, 2007
2INW
DownloadVisualize
BU of 2inw by Molmil
Crystal structure of Q83JN9 from Shigella flexneri at high resolution. Northeast Structural Genomics Consortium target SfR137.
Descriptor: PHOSPHATE ION, Putative structural protein
Authors:Kuzin, A.P, Su, M, Jayaraman, S, Vorobiev, S.M, Wang, D, Jiang, M, Cunningham, K, Ma, L.-C, Xiao, R, Liu, J, Baran, M, Swapna, G.V.T, Acton, T.B, Rost, B, Montelione, G.T, Tong, L, Hunt, J.F, Northeast Structural Genomics Consortium (NESG)
Deposit date:2006-10-09
Release date:2006-10-24
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.5 Å)
Cite:Crystal Structures of Phd-Doc, HigA, and YeeU Establish Multiple Evolutionary Links between Microbial Growth-Regulating Toxin-Antitoxin Systems.
Structure, 18, 2010

219515

PDB entries from 2024-05-08

PDB statisticsPDBj update infoContact PDBjnumon