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PDB: 127 results

5A8W
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METHYL-COENZYME M REDUCTASE II FROM METHANOTHERMOBACTER WOLFEII AT 1. 8 A RESOLUTION
Descriptor: 1-THIOETHANESULFONIC ACID, ACETATE ION, Coenzyme B, ...
Authors:Wagner, T, Ermler, U.
Deposit date:2015-07-17
Release date:2016-08-03
Last modified:2024-01-10
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Didehydroaspartate Modification in Methyl-Coenzyme M Reductase Catalyzing Methane Formation.
Angew.Chem.Int.Ed.Engl., 55, 2016
5A8K
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METHYL-COENZYME M REDUCTASE FROM METHANOTHERMOBACTER WOLFEII AT 1.4 A RESOLUTION
Descriptor: 1-THIOETHANESULFONIC ACID, 2-ETHOXYETHANOL, CALCIUM ION, ...
Authors:Wagner, T, Ermler, U.
Deposit date:2015-07-16
Release date:2016-08-03
Last modified:2024-01-10
Method:X-RAY DIFFRACTION (1.41 Å)
Cite:Didehydroaspartate Modification in Methyl-Coenzyme M Reductase Catalyzing Methane Formation.
Angew.Chem.Int.Ed.Engl., 55, 2016
7B1S
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BU of 7b1s by Molmil
Crystal structure of the ethyl-coenzyme M reductase from Candidatus Ethanoperedens thermophilum at 0.994-A resolution
Descriptor: (2S)-2-{[(2S)-2-{[(2S)-2-hydroxypropyl]oxy}propyl]oxy}propan-1-ol, 1-THIOETHANESULFONIC ACID, 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL, ...
Authors:Wagner, T, Lemaire, O.N, Engilberge, S.
Deposit date:2020-11-25
Release date:2021-07-14
Last modified:2024-01-31
Method:X-RAY DIFFRACTION (0.992 Å)
Cite:Crystal structure of a key enzyme for anaerobic ethane activation.
Science, 373, 2021
7B2H
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BU of 7b2h by Molmil
Crystal structure of the methyl-coenzyme M reductase from Methanothermobacter Marburgensis derivatized with xenon
Descriptor: 1,2-ETHANEDIOL, 1-THIOETHANESULFONIC ACID, CHLORIDE ION, ...
Authors:Wagner, T, Lemaire, O.N, Engilberge, S.
Deposit date:2020-11-27
Release date:2021-07-14
Last modified:2024-01-31
Method:X-RAY DIFFRACTION (2.12 Å)
Cite:Crystal structure of a key enzyme for anaerobic ethane activation.
Science, 373, 2021
6HR8
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BU of 6hr8 by Molmil
HMG-CoA reductase from Methanothermococcus thermolithotrophicus in complex with NADPH at 2.9 A resolution
Descriptor: DI(HYDROXYETHYL)ETHER, HMG-CoA reductase, NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE, ...
Authors:Wagner, T, Voegeli, B, Erb, T.J, Shima, S.
Deposit date:2018-09-26
Release date:2019-02-13
Last modified:2024-01-24
Method:X-RAY DIFFRACTION (2.9 Å)
Cite:Crystal structure of archaeal HMG-CoA reductase: insights into structural changes of the C-terminal helix of the class-I enzyme.
Febs Lett., 593, 2019
5O4J
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HcgC from Methanococcus maripaludis cocrystallized with SAH and pyridinol
Descriptor: (3~{E})-3-[(~{E})-3-oxidanylprop-2-enoyl]iminopropanoic acid, 2-{2-[2-(2-{2-[2-(2-ETHOXY-ETHOXY)-ETHOXY]-ETHOXY}-ETHOXY)-ETHOXY]-ETHOXY}-ETHANOL, 6-carboxy methyl-4-hydroxy-2-pyridinol, ...
Authors:Wagner, T, Bai, L, Xu, T, Hu, X, Ermler, U, Shima, S.
Deposit date:2017-05-29
Release date:2017-07-19
Last modified:2024-01-17
Method:X-RAY DIFFRACTION (1.7 Å)
Cite:A Water-Bridged H-Bonding Network Contributes to the Catalysis of the SAM-Dependent C-Methyltransferase HcgC.
Angew. Chem. Int. Ed. Engl., 56, 2017
6YUA
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BU of 6yua by Molmil
CO-dehydrogenase coupled to the N-terminal domain of the Acetyl-CoA synthase from Clostridium autoethanogenum isolated after tryptic digestion.
Descriptor: 1,2-ETHANEDIOL, CO dehydrogenase/acetyl-CoA synthase complex, beta subunit, ...
Authors:Wagner, T, Lemaire, O.N.
Deposit date:2020-04-26
Release date:2020-11-04
Last modified:2024-01-24
Method:X-RAY DIFFRACTION (3.16 Å)
Cite:Gas channel rerouting in a primordial enzyme: Structural insights of the carbon-monoxide dehydrogenase/acetyl-CoA synthase complex from the acetogen Clostridium autoethanogenum.
Biochim Biophys Acta Bioenerg, 1862, 2020
6HR7
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BU of 6hr7 by Molmil
HMG-CoA reductase from Methanothermococcus thermolithotrophicus apo form at 2.4 A resolution
Descriptor: 2,3-DIHYDROXY-1,4-DITHIOBUTANE, CHLORIDE ION, GLYCEROL, ...
Authors:Wagner, T, Voegeli, B, Erb, T.J, Shima, S.
Deposit date:2018-09-26
Release date:2019-02-13
Last modified:2024-01-24
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:Crystal structure of archaeal HMG-CoA reductase: insights into structural changes of the C-terminal helix of the class-I enzyme.
Febs Lett., 593, 2019
6EP8
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InhA Y158F mutant in complex with NADH from Mycobacterium tuberculosis
Descriptor: (4S)-2-METHYL-2,4-PENTANEDIOL, Enoyl-[acyl-carrier-protein] reductase [NADH], GLYCEROL, ...
Authors:Wagner, T, Voegeli, B, Rosenthal, R.G, Stoffel, G, Shima, S, Kiefer, P, Cortina, N, Erb, T.J.
Deposit date:2017-10-11
Release date:2018-09-19
Last modified:2024-01-17
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:InhA, the enoyl-thioester reductase fromMycobacterium tuberculosisforms a covalent adduct during catalysis.
J. Biol. Chem., 293, 2018
5ODH
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BU of 5odh by Molmil
Heterodisulfide reductase / [NiFe]-hydrogenase complex from Methanothermococcus thermolithotrophicus soaked with heterodisulfide for 3.5 minutes
Descriptor: 1-THIOETHANESULFONIC ACID, 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL, 3,6,9,12,15,18,21,24,27,30,33,36,39-TRIDECAOXAHENTETRACONTANE-1,41-DIOL, ...
Authors:Wagner, T, Koch, J, Ermler, U, Shima, S.
Deposit date:2017-07-05
Release date:2017-08-30
Last modified:2024-01-17
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Methanogenic heterodisulfide reductase (HdrABC-MvhAGD) uses two noncubane [4Fe-4S] clusters for reduction.
Science, 357, 2017
5L8X
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BU of 5l8x by Molmil
X-RAY STRUCTURE OF APO METHANOCALDOCOCCUS JANNASCHII METHYLTRANSFERASE SUBUNIT A AT 1.85 ANGSTROM
Descriptor: (2S)-2-hydroxybutanedioic acid, D-MALATE, Tetrahydromethanopterin S-methyltransferase subunit A
Authors:Wagner, T, Ermler, U, Shima, S.
Deposit date:2016-06-08
Release date:2016-06-22
Last modified:2024-05-01
Method:X-RAY DIFFRACTION (1.85 Å)
Cite:MtrA of the sodium ion pumping methyltransferase binds cobalamin in a unique mode.
Sci Rep, 6, 2016
5LAA
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BU of 5laa by Molmil
X-RAY STRUCTURE OF THE METHYLTRANSFERASE SUBUNIT A FROM METHANOTHERMUS FERVIDUS IN COMPLEX WITH COBALAMIN
Descriptor: COBALAMIN, Tetrahydromethanopterin S-methyltransferase subunit A
Authors:Wagner, T, Ermler, U, Shima, S.
Deposit date:2016-06-14
Release date:2016-07-06
Last modified:2024-05-08
Method:X-RAY DIFFRACTION (3 Å)
Cite:MtrA of the sodium ion pumping methyltransferase binds cobalamin in a unique mode.
Sci Rep, 6, 2016
1GG1
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BU of 1gg1 by Molmil
CRYSTAL STRUCTURE ANALYSIS OF DAHP SYNTHASE IN COMPLEX WITH MN2+ AND 2-PHOSPHOGLYCOLATE
Descriptor: 2-PHOSPHOGLYCOLIC ACID, 3-DEOXY-D-ARABINO-HEPTULOSONATE-7-PHOSPHATE SYNTHASE, MANGANESE (II) ION, ...
Authors:Wagner, T, Shumilin, I.A, Bauerle, R, Kretsinger, R.H.
Deposit date:2000-08-04
Release date:2000-10-04
Last modified:2023-12-27
Method:X-RAY DIFFRACTION (2 Å)
Cite:Structure of 3-deoxy-d-arabino-heptulosonate-7-phosphate synthase from Escherichia coli: comparison of the Mn(2+)*2-phosphoglycolate and the Pb(2+)*2-phosphoenolpyruvate complexes and implications for catalysis.
J.Mol.Biol., 301, 2000
6TM3
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BU of 6tm3 by Molmil
Structure of methylene-tetrahydromethanopterin dehydrogenase from Methylorubrum extorquens AM1 in a close conformation containing NADP+ and methylene-H4MPT
Descriptor: 1,2-ETHANEDIOL, 5,10-DIMETHYLENE TETRAHYDROMETHANOPTERIN, Bifunctional protein MdtA, ...
Authors:Wagner, T, Huang, G, Demmer, U, Warkentin, E, Ermler, U, Shima, S.
Deposit date:2019-12-03
Release date:2020-02-26
Last modified:2024-01-24
Method:X-RAY DIFFRACTION (1.08 Å)
Cite:The Hydride Transfer Process in NADP-dependent Methylene-tetrahydromethanopterin Dehydrogenase.
J.Mol.Biol., 432, 2020
6S6Y
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BU of 6s6y by Molmil
X-ray crystal structure of the formyltransferase/hydrolase complex (FhcABCD) from Methylorubrum extorquens in complex with methylofuran
Descriptor: (2~{S})-3-[4-[[5-(aminomethyl)furan-3-yl]methoxy]phenyl]-2-(methylamino)propanoic acid, 1,2-ETHANEDIOL, AMINO GROUP, ...
Authors:Wagner, T, Hemmann, J.L, Shima, S, Vorholt, J.
Deposit date:2019-07-04
Release date:2019-12-04
Last modified:2024-01-24
Method:X-RAY DIFFRACTION (3.1 Å)
Cite:Methylofuran is a prosthetic group of the formyltransferase/hydrolase complex and shuttles one-carbon units between two active sites.
Proc.Natl.Acad.Sci.USA, 116, 2019
1GG0
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BU of 1gg0 by Molmil
CRYSTAL STRUCTURE ANALYSIS OF KDOP SYNTHASE AT 3.0 A
Descriptor: 3-DEOXY-D-MANNO-OCTULOSONATE 8-PHOSPHATE SYNTHASE, PHOSPHATE ION
Authors:Wagner, T, Kretsinger, R.H, Bauerle, R, Tolbert, W.D.
Deposit date:2000-08-04
Release date:2000-10-04
Last modified:2023-12-27
Method:X-RAY DIFFRACTION (3 Å)
Cite:3-Deoxy-D-manno-octulosonate-8-phosphate synthase from Escherichia coli. Model of binding of phosphoenolpyruvate and D-arabinose-5-phosphate.
J.Mol.Biol., 301, 2000
4UUJ
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BU of 4uuj by Molmil
POTASSIUM CHANNEL KCSA-FAB WITH TETRAHEXYLAMMONIUM
Descriptor: ANTIBODY FAB FRAGMENT HEAVY CHAIN, ANTIBODY FAB FRAGMENT LIGHT CHAIN, COBALT (II) ION, ...
Authors:Lenaeus, M.J, Burdette, D, Wagner, T, Focia, P.J, Gross, A.
Deposit date:2014-07-29
Release date:2014-08-27
Last modified:2024-01-10
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:Structures of Kcsa in Complex with Symmetrical Quaternary Ammonium Compounds Reveal a Hydrophobic Binding Site.
Biochemistry, 53, 2014
7P4Y
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BU of 7p4y by Molmil
GlnK2 from Methanothermococcus thermolithotrophicus in the apo state at a resolution of 2.3 A
Descriptor: CHLORIDE ION, GlnK2 from Methanothermococcus thermolithotrophicus
Authors:Mueller, M.-C, Wagner, T.
Deposit date:2021-07-13
Release date:2021-10-06
Last modified:2024-01-31
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:The Oxoglutarate Binding Site and Regulatory Mechanism Are Conserved in Ammonium Transporter Inhibitors GlnKs from Methanococcales .
Int J Mol Sci, 22, 2021
7P4V
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BU of 7p4v by Molmil
GlnK1 from Methanothermococcus thermolithotrophicus with dADP at a resolution of 1.94 A
Descriptor: 2'-DEOXYADENOSINE-5'-DIPHOSPHATE, CHLORIDE ION, GlnK1 from Methanothermococcus thermolithotrophicus
Authors:Mueller, M.-C, Wagner, T.
Deposit date:2021-07-13
Release date:2021-10-06
Last modified:2024-01-31
Method:X-RAY DIFFRACTION (1.94 Å)
Cite:The Oxoglutarate Binding Site and Regulatory Mechanism Are Conserved in Ammonium Transporter Inhibitors GlnKs from Methanococcales .
Int J Mol Sci, 22, 2021
7P50
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BU of 7p50 by Molmil
GlnK2 from Methanothermococcus thermolithotrophicus in complex with Mg-ATP and 2-oxoglutarate at a resolution of 1.16 A
Descriptor: 2-(N-MORPHOLINO)-ETHANESULFONIC ACID, 2-OXOGLUTARIC ACID, ADENOSINE-5'-TRIPHOSPHATE, ...
Authors:Mueller, M.-C, Wagner, T.
Deposit date:2021-07-13
Release date:2021-10-06
Last modified:2024-01-31
Method:X-RAY DIFFRACTION (1.16 Å)
Cite:The Oxoglutarate Binding Site and Regulatory Mechanism Are Conserved in Ammonium Transporter Inhibitors GlnKs from Methanococcales .
Int J Mol Sci, 22, 2021
7P52
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BU of 7p52 by Molmil
GlnK1 from Methanocaldococcus jannaschii with Mg-ATP and 2-oxoglutarate at a resolution of 1.2 A
Descriptor: 2-OXOGLUTARIC ACID, ADENOSINE-5'-TRIPHOSPHATE, GLYCEROL, ...
Authors:Mueller, M.-C, Wagner, T.
Deposit date:2021-07-13
Release date:2021-10-06
Last modified:2024-01-31
Method:X-RAY DIFFRACTION (1.20002 Å)
Cite:The Oxoglutarate Binding Site and Regulatory Mechanism Are Conserved in Ammonium Transporter Inhibitors GlnKs from Methanococcales .
Int J Mol Sci, 22, 2021
7NKG
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BU of 7nkg by Molmil
Methyl-coenzyme M reductase from Methermicoccus shengliensis at 1.6-A resolution
Descriptor: 1-THIOETHANESULFONIC ACID, Coenzyme B, FACTOR 430, ...
Authors:Mueller, M, Wagner, T.
Deposit date:2021-02-18
Release date:2021-05-19
Last modified:2024-01-31
Method:X-RAY DIFFRACTION (1.6 Å)
Cite:Structural Insights into the Methane-Generating Enzyme from a Methoxydotrophic Methanogen Reveal a Restrained Gallery of Post-Translational Modifications.
Microorganisms, 9, 2021
7NPA
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BU of 7npa by Molmil
Crystal structure of the Coenzyme F420-dependent sulfite reductase from Methanothermococcus thermolithotrophicus at 1.55-A resolution
Descriptor: 1,2-ETHANEDIOL, 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL, CHLORIDE ION, ...
Authors:Jespersen, M, Wagner, T.
Deposit date:2021-02-26
Release date:2022-03-23
Last modified:2024-02-07
Method:X-RAY DIFFRACTION (1.55 Å)
Cite:Structures of the sulfite detoxifying F 420 -dependent enzyme from Methanococcales.
Nat.Chem.Biol., 2023
7NP8
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BU of 7np8 by Molmil
Crystal structure of the Coenzyme F420-dependent sulfite reductase from Methanocaldococcus jannaschii at 2.3-A resolution
Descriptor: (4S)-2-METHYL-2,4-PENTANEDIOL, CALCIUM ION, CHLORIDE ION, ...
Authors:Jespersen, M, Wagner, T.
Deposit date:2021-02-26
Release date:2022-03-23
Last modified:2023-12-06
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Structures of the sulfite detoxifying F 420 -dependent enzyme from Methanococcales.
Nat.Chem.Biol., 2023
7NEP
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BU of 7nep by Molmil
Homology model of the in situ actomyosin complex from the A-band of mouse psoas muscle sarcomere in the rigor state
Descriptor: Actin, alpha skeletal muscle, Myosin light chain 1/3, ...
Authors:Wang, Z, Grange, M, Wagner, T, Kho, A.L, Gautel, M, Raunser, S.
Deposit date:2021-02-04
Release date:2021-04-07
Last modified:2024-05-01
Method:ELECTRON MICROSCOPY (10.2 Å)
Cite:The molecular basis for sarcomere organization in vertebrate skeletal muscle.
Cell, 184, 2021

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PDB entries from 2024-10-09

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