Loading
PDBj
メニューPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help
PDB: 12479 件

1BUD
DownloadVisualize
BU of 1bud by Molmil
ACUTOLYSIN A FROM SNAKE VENOM OF AGKISTRODON ACUTUS AT PH 5.0
分子名称: CALCIUM ION, PROTEIN (ACUTOLYSIN A), ZINC ION
著者Gong, W, Zhu, X, Liu, S, Teng, M, Niu, L.
登録日1998-09-03
公開日1999-09-07
最終更新日2023-08-09
実験手法X-RAY DIFFRACTION (1.9 Å)
主引用文献Crystal structures of acutolysin A, a three-disulfide hemorrhagic zinc metalloproteinase from the snake venom of Agkistrodon acutus.
J.Mol.Biol., 283, 1998
8HPE
DownloadVisualize
BU of 8hpe by Molmil
Crystal structure of Leucine dehydrogenase
分子名称: GLYCEROL, Leucine dehydrogenase, SULFATE ION
著者Li, X, Song, W.
登録日2022-12-12
公開日2024-03-20
実験手法X-RAY DIFFRACTION (3.22 Å)
主引用文献A Tri-Enzyme Cascade for Efficient Production of L-2-Aminobutyrate from L-Threonine.
Chembiochem, 24, 2023
8HR6
DownloadVisualize
BU of 8hr6 by Molmil
leucine DEHYDROGENASE STRUCTURE IN TERNARY COMPLEX WITH NAD+ from Bacillus thuringiensis
分子名称: Leucine dehydrogenase, NICOTINAMIDE-ADENINE-DINUCLEOTIDE, SULFATE ION
著者Li, X, Song, W.
登録日2022-12-14
公開日2024-03-20
実験手法X-RAY DIFFRACTION (3.52 Å)
主引用文献A Tri-Enzyme Cascade for Efficient Production of L-2-Aminobutyrate from L-Threonine.
Chembiochem, 24, 2023
6Y9B
DownloadVisualize
BU of 6y9b by Molmil
Cryo-EM structure of trimeric human STEAP1 bound to three Fab120.545 fragments
分子名称: 1,2-DIMYRISTOYL-SN-GLYCERO-3-PHOSPHATE, Fab120.545 heavy chain, Fab120.545 light chain, ...
著者Oosterheert, W, Gros, P.
登録日2020-03-06
公開日2020-05-20
最終更新日2020-07-22
実験手法ELECTRON MICROSCOPY (2.97 Å)
主引用文献Cryo-electron microscopy structure and potential enzymatic function of human six-transmembrane epithelial antigen of the prostate 1 (STEAP1).
J.Biol.Chem., 295, 2020
1BJO
DownloadVisualize
BU of 1bjo by Molmil
THE STRUCTURE OF PHOSPHOSERINE AMINOTRANSFERASE FROM E. COLI IN COMPLEX WITH ALPHA-METHYL-L-GLUTAMATE
分子名称: ALPHA-METHYL-L-GLUTAMIC ACID, PHOSPHOSERINE AMINOTRANSFERASE, PYRIDOXAL-5'-PHOSPHATE
著者Hester, G, Stark, W, Jansonius, J.N.
登録日1998-06-25
公開日1998-11-04
最終更新日2018-04-18
実験手法X-RAY DIFFRACTION (2.8 Å)
主引用文献Crystal structure of phosphoserine aminotransferase from Escherichia coli at 2.3 A resolution: comparison of the unligated enzyme and a complex with alpha-methyl-l-glutamate.
J.Mol.Biol., 286, 1999
1BSK
DownloadVisualize
BU of 1bsk by Molmil
ZINC DEFORMYLASE INHIBITOR COMPLEX FROM E.COLI
分子名称: (S)-2-(PHOSPHONOXY)CAPROYL-L-LEUCYL-P-NITROANILIDE, PHOSPHATE ION, PROTEIN (PEPTIDE DEFORMYLASE), ...
著者Hao, B, Gong, W, Rajagopalan, P.T, Hu, Y, Pei, D, Chan, M.K.
登録日1998-08-28
公開日2000-04-15
最終更新日2023-08-09
実験手法X-RAY DIFFRACTION (3 Å)
主引用文献Structural basis for the design of antibiotics targeting peptide deformylase.
Biochemistry, 38, 1999
6X5Z
DownloadVisualize
BU of 6x5z by Molmil
Bovine Cardiac Myosin in Complex with Chicken Skeletal Actin and Human Cardiac Tropomyosin in the Rigor State
分子名称: ADENOSINE-5'-DIPHOSPHATE, Actin, alpha skeletal muscle, ...
著者Doran, M.H, Lehman, W, Rynkiewicz, M.J, Bullitt, E.
登録日2020-05-27
公開日2020-07-22
最終更新日2024-03-06
実験手法ELECTRON MICROSCOPY (4.24 Å)
主引用文献Cryo-EM and Molecular Docking Shows Myosin Loop 4 Contacts Actin and Tropomyosin on Thin Filaments.
Biophys.J., 119, 2020
6SKS
DownloadVisualize
BU of 6sks by Molmil
Crystal structure of bovine carbonic anhydrase II in complex with a benzenesulfonamide-based ligand (SH1)
分子名称: COPPER (II) ION, Carbonic anhydrase 2, GLYCEROL, ...
著者Groves, M.R, Wang, W, van Oosterwijk, N.
登録日2019-08-16
公開日2020-08-26
最終更新日2024-01-24
実験手法X-RAY DIFFRACTION (1.75 Å)
主引用文献Target diazotransfer reagents to label metalloenzymes
To Be Published
6SI5
DownloadVisualize
BU of 6si5 by Molmil
T. cruzi FPPS in complex with 1-methyl-5-(4,5,6,7-tetrahydrothieno[3,2-c]pyridine-5-carbonyl)pyridin-2(1H)-one
分子名称: 5-(6,7-dihydro-4~{H}-thieno[3,2-c]pyridin-5-ylcarbonyl)-1-methyl-pyridin-2-one, Farnesyl diphosphate synthase, SULFATE ION
著者Petrick, J.K, Muenzker, L, Schleberger, C, Cornaciu, I, Clavel, D, Marquez, J.A, Jahnke, W.
登録日2019-08-08
公開日2020-08-26
最終更新日2024-02-07
実験手法X-RAY DIFFRACTION (2.097 Å)
主引用文献Targeting farnesyl pyrophosphate synthase of Trypanosoma cruzi by fragment-based lead discovery
Thesis, 2019
6SII
DownloadVisualize
BU of 6sii by Molmil
T. brucei FPPS in complex with 1-((1H-indol-3-yl)methyl)-N-(3-chlorobenzyl)piperidin-4-amine
分子名称: Farnesyl pyrophosphate synthase, GLYCEROL, ~{N}-[(3-chlorophenyl)methyl]-1-(1~{H}-indol-3-ylmethyl)piperidin-4-amine
著者Muenzker, L, Petrick, J.K, Schleberger, C, Jahnke, W.
登録日2019-08-09
公開日2020-08-26
最終更新日2024-01-24
実験手法X-RAY DIFFRACTION (2.33 Å)
主引用文献T. brucei FPPS
To Be Published
6XA1
DownloadVisualize
BU of 6xa1 by Molmil
Structure of a drug-like compound stalled human translation termination complex
分子名称: 18S rRNA, 28S rRNA, 40S ribosomal protein S10, ...
著者Li, W, Cate, J.
登録日2020-06-03
公開日2020-10-07
最終更新日2020-10-14
実験手法ELECTRON MICROSCOPY (2.8 Å)
主引用文献Selective inhibition of human translation termination by a drug-like compound.
Nat Commun, 11, 2020
6XVG
DownloadVisualize
BU of 6xvg by Molmil
Human Sirt6 3-318 in complex with ADP-ribose and the activator MDL-801
分子名称: 5-[[3,5-bis(chloranyl)phenyl]sulfonylamino]-2-[(5-bromanyl-4-fluoranyl-2-methyl-phenyl)sulfamoyl]benzoic acid, GLYCEROL, NAD-dependent protein deacetylase sirtuin-6, ...
著者You, W, Steegborn, C.
登録日2020-01-22
公開日2020-10-28
最終更新日2024-01-24
実験手法X-RAY DIFFRACTION (2.1 Å)
主引用文献Binding site for activator MDL-801 on SIRT6.
Nat.Chem.Biol., 17, 2021
6XV6
DownloadVisualize
BU of 6xv6 by Molmil
Human Sirt6 3-318 in complex with ADP-ribose
分子名称: GLYCEROL, NAD-dependent protein deacetylase sirtuin-6, NICOTINAMIDE, ...
著者You, W, Steegborn, C.
登録日2020-01-21
公開日2020-10-28
最終更新日2024-01-24
実験手法X-RAY DIFFRACTION (1.75 Å)
主引用文献Binding site for activator MDL-801 on SIRT6.
Nat.Chem.Biol., 17, 2021
1BS9
DownloadVisualize
BU of 1bs9 by Molmil
ACETYLXYLAN ESTERASE FROM P. PURPUROGENUM REFINED AT 1.10 ANGSTROMS
分子名称: ACETYL XYLAN ESTERASE, SULFATE ION
著者Ghosh, D, Erman, M, Sawicki, M.W, Lala, P, Weeks, D.R, Li, N, Pangborn, W, Thiel, D.J, Jornvall, H, Eyzaguirre, J.
登録日1998-09-01
公開日1999-05-18
最終更新日2011-07-13
実験手法X-RAY DIFFRACTION (1.1 Å)
主引用文献Determination of a protein structure by iodination: the structure of iodinated acetylxylan esterase.
Acta Crystallogr.,Sect.D, 55, 1999
6XK0
DownloadVisualize
BU of 6xk0 by Molmil
Albumin-dexamethasone complex
分子名称: Albumin, CITRATE ANION, DEXAMETHASONE, ...
著者Czub, M.P, Majorek, K.A, Shabalin, I.G, Minor, W, New York Structural Genomics Research Consortium (NYSGRC)
登録日2020-06-24
公開日2020-07-15
最終更新日2023-10-18
実験手法X-RAY DIFFRACTION (2.4 Å)
主引用文献Molecular determinants of vascular transport of dexamethasone in COVID-19 therapy.
Iucrj, 7, 2020
6XE4
DownloadVisualize
BU of 6xe4 by Molmil
BTK Fluorocyclopropyl amide inhibitor, Compound 25
分子名称: (1S,2S)-N-[2'-(6-tert-butyl-8-fluoro-1-oxophthalazin-2(1H)-yl)-3'-(hydroxymethyl)-1-methyl-6-oxo[1,6-dihydro[3,4'-bipyridine]]-5-yl]-2-fluorocyclopropane-1-carboxamide, SULFATE ION, Tyrosine-protein kinase BTK
著者Kiefer, J.R, Crawford, J.J, Lee, W, Eigenbrot, C, Yu, C.
登録日2020-06-11
公開日2020-07-22
最終更新日2024-03-06
実験手法X-RAY DIFFRACTION (1.6 Å)
主引用文献Stereochemical Differences in Fluorocyclopropyl Amides Enable Tuning of Btk Inhibition and Off-Target Activity.
Acs Med.Chem.Lett., 11, 2020
6SQJ
DownloadVisualize
BU of 6sqj by Molmil
Crystal structure of glycoprotein D of Equine Herpesvirus Type 1
分子名称: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, Glycoprotein D, ...
著者Kremling, V, Loll, B, Azab, W, Osterrieder, N, Dahmani, I, Chiantia, P, Wahl, M.
登録日2019-09-04
公開日2020-09-30
最終更新日2024-02-07
実験手法X-RAY DIFFRACTION (2.245 Å)
主引用文献Crystal structures of glycoprotein D of equine alphaherpesviruses reveal potential binding sites to the entry receptor MHC-I.
Front Microbiol, 14, 2023
6SXX
DownloadVisualize
BU of 6sxx by Molmil
Crystal structure of the bromodomain of human CREBBP in complex with ACA007
分子名称: (3~{R})-1-ethanoylpyrrolidine-3-carboxylic acid, 1,2-ETHANEDIOL, CREBBP
著者Xiang, W, Bedi, R.K, Sledz, P, Caflisch, A.
登録日2019-09-26
公開日2020-07-29
最終更新日2024-01-24
実験手法X-RAY DIFFRACTION (2.01 Å)
主引用文献Crystal structure of the bromodomain of human CREBBP in complex with ACA007
To Be Published
6T13
DownloadVisualize
BU of 6t13 by Molmil
CRYSTAL STRUCTURE OF GLUCOCEREBROSIDASE IN COMPLEX WITH A PYRROLOPYRAZINE
分子名称: 1,2-ETHANEDIOL, 1-[4-[2-(4-methoxyphenyl)-5-methyl-pyrrolo[2,3-b]pyrazin-6-yl]piperidin-1-yl]ethanone, 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL, ...
著者Benz, J, Ehler, A, Hug, M, Huber, S, Rufer, A.C, Guba, W, Jagasia, R, Hofmann, E.C, Rodriguez Sarmiento, R.M.
登録日2019-10-03
公開日2020-12-23
最終更新日2024-01-24
実験手法X-RAY DIFFRACTION (1.85 Å)
主引用文献Novel beta-Glucocerebrosidase Activators That Bind to a New Pocket at a Dimer Interface and Induce Dimerization.
Angew.Chem.Int.Ed.Engl., 60, 2021
6SHV
DownloadVisualize
BU of 6shv by Molmil
T. cruzi FPPS in complex with 5-(4-fluorophenoxy)pyridin-2-amine
分子名称: 5-(4-fluoranylphenoxy)pyridin-2-amine, Farnesyl diphosphate synthase, SULFATE ION, ...
著者Petrick, J.K, Muenzker, L, Schleberger, C, Cornaciu, I, Clavel, D, Marquez, J.A, Jahnke, W.
登録日2019-08-08
公開日2020-08-26
最終更新日2024-02-07
実験手法X-RAY DIFFRACTION (1.808 Å)
主引用文献Targeting farnesyl pyrophosphate synthase of Trypanosoma cruzi by fragment-based lead discovery
Thesis, 2019
1BOO
DownloadVisualize
BU of 1boo by Molmil
PVUII DNA METHYLTRANSFERASE (CYTOSINE-N4-SPECIFIC)
分子名称: PROTEIN (N-4 CYTOSINE-SPECIFIC METHYLTRANSFERASE PVU II), S-ADENOSYL-L-HOMOCYSTEINE
著者Gong, W, O'Gara, M, Blumenthal, R.M, Cheng, X.
登録日1998-07-31
公開日1998-08-12
最終更新日2024-05-22
実験手法X-RAY DIFFRACTION (2.8 Å)
主引用文献Structure of pvu II DNA-(cytosine N4) methyltransferase, an example of domain permutation and protein fold assignment.
Nucleic Acids Res., 25, 1997
1BSW
DownloadVisualize
BU of 1bsw by Molmil
ACUTOLYSIN A FROM SNAKE VENOM OF AGKISTRODON ACUTUS AT PH 7.5
分子名称: CALCIUM ION, PROTEIN (ACUTOLYSIN A), ZINC ION
著者Gong, W, Zhu, X, Liu, S, Teng, M, Niu, L.
登録日1998-08-31
公開日1999-08-26
最終更新日2023-08-09
実験手法X-RAY DIFFRACTION (1.95 Å)
主引用文献Crystal structures of acutolysin A, a three-disulfide hemorrhagic zinc metalloproteinase from the snake venom of Agkistrodon acutus.
J.Mol.Biol., 283, 1998
168D
DownloadVisualize
BU of 168d by Molmil
STABILIZING EFFECTS OF THE RNA 2'-SUBSTITUENT: CRYSTAL STRUCTURE OF AN OLIGODEOXYNUCLEOTIDE DUPLEX CONTAINING 2'-O-METHYLATED ADENOSINES
分子名称: DNA/RNA (5'-D(*GP*CP*GP*TP*)-R(*(A2M)P*)-D(*TP*AP*CP*GP*C)-3')
著者Lubini, P, Zuercher, W, Egli, M.
登録日1994-04-08
公開日1994-08-31
最終更新日2024-02-07
実験手法X-RAY DIFFRACTION (2 Å)
主引用文献Stabilizing effects of the RNA 2'-substituent: crystal structure of an oligodeoxynucleotide duplex containing 2'-O-methylated adenosines.
Chem.Biol., 1, 1994
2BHW
DownloadVisualize
BU of 2bhw by Molmil
PEA LIGHT-HARVESTING COMPLEX II AT 2.5 ANGSTROM RESOLUTION
分子名称: (1R,3R)-6-{(3E,5E,7E,9E,11E,13E,15E,17E)-18-[(1S,4R,6R)-4-HYDROXY-2,2,6-TRIMETHYL-7-OXABICYCLO[4.1.0]HEPT-1-YL]-3,7,12,16-TETRAMETHYLOCTADECA-1,3,5,7,9,11,13,15,17-NONAENYLIDENE}-1,5,5-TRIMETHYLCYCLOHEXANE-1,3-DIOL, (3R,3'R,6'S,9R,9'R,13R,13'S)-4',5'-DIDEHYDRO-5',6',7',8',9,9',10,10',11,11',12,12',13,13',14,14',15,15'-OCTADECAHYDRO-BETA,BETA-CAROTENE-3,3'-DIOL, (3S,5R,6S,3'S,5'R,6'S)-5,6,5',6'-DIEPOXY-5,6,5',6'- TETRAHYDRO-BETA,BETA-CAROTENE-3,3'-DIOL, ...
著者Standfuss, J, Terwisscha van Scheltinga, A.C, Lamborghini, M, Kuehlbrandt, W.
登録日2005-01-19
公開日2006-05-23
最終更新日2024-05-01
実験手法X-RAY DIFFRACTION (2.5 Å)
主引用文献Mechanisms of Photoprotection and Nonphotochemical Quenching in Pea Light-Harvesting Complex at 2.5 A Resolution.
Embo J., 24, 2005
1KFX
DownloadVisualize
BU of 1kfx by Molmil
Crystal Structure of Human m-Calpain Form I
分子名称: M-CALPAIN LARGE SUBUNIT, M-CALPAIN SMALL SUBUNIT
著者Strobl, S, Fernandez-Catalan, C, Braun, M, Huber, R, Masumoto, H, Nakagawa, K, Irie, A, Sorimachi, H, Bourenkow, G, Bartunik, H, Suzuki, K, Bode, W.
登録日2001-11-23
公開日2001-12-07
最終更新日2023-08-16
実験手法X-RAY DIFFRACTION (3.15 Å)
主引用文献The crystal structure of calcium-free human m-calpain suggests an electrostatic switch mechanism for activation by calcium.
Proc.Natl.Acad.Sci.USA, 97, 2000

222415

件を2024-07-10に公開中

PDB statisticsPDBj update infoContact PDBjnumon