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PDB: 12512 件

5KAB
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Protein Tyrosine Phosphatase 1B Delta helix 7, P185G mutant in complex with TCS401, open state
分子名称: 2-(OXALYL-AMINO)-4,5,6,7-TETRAHYDRO-THIENO[2,3-C]PYRIDINE-3-CARBOXYLIC ACID, 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL, CHLORIDE ION, ...
著者Choy, M.S, Machado, L.E.S.F, Peti, W, Page, R.
登録日2016-06-01
公開日2017-03-08
最終更新日2023-09-27
実験手法X-RAY DIFFRACTION (1.968 Å)
主引用文献Conformational Rigidity and Protein Dynamics at Distinct Timescales Regulate PTP1B Activity and Allostery.
Mol. Cell, 65, 2017
8F5C
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Mirror-image DNA containing 2'-OMe-L-dC modification
分子名称: DNA (5'-D(*(0DG))-R(P*(XE6))-D(P*(0DG)P*(0DT)P*(0DA)P*(0DC)P*(0DG)P*(0DC))-3'), MAGNESIUM ION
著者Zhang, W, Dantsu, Y.
登録日2022-11-13
公開日2023-09-20
最終更新日2023-09-27
実験手法X-RAY DIFFRACTION (1.15 Å)
主引用文献Synthesis and Structural Characterization of 2'-Deoxy-2'-Methoxy-L-Cytidine Nucleic Acids
Chemistryselect, 2023
5K2D
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1.9A angstrom A2a adenosine receptor structure with MR phasing using XFEL data
分子名称: (2R)-2,3-dihydroxypropyl (9Z)-octadec-9-enoate, (2S)-2,3-dihydroxypropyl (9Z)-octadec-9-enoate, 4-{2-[(7-amino-2-furan-2-yl[1,2,4]triazolo[1,5-a][1,3,5]triazin-5-yl)amino]ethyl}phenol, ...
著者Batyuk, A, Galli, L, Ishchenko, A, Han, G.W, Gati, C, Popov, P, Lee, M.-Y, Stauch, B, White, T.A, Barty, A, Aquila, A, Hunter, M.S, Liang, M, Boutet, S, Pu, M, Liu, Z.-J, Nelson, G, James, D, Li, C, Zhao, Y, Spence, J.C.H, Liu, W, Fromme, P, Katritch, V, Weierstall, U, Stevens, R.C, Cherezov, V, GPCR Network (GPCR)
登録日2016-05-18
公開日2016-09-21
最終更新日2023-09-27
実験手法X-RAY DIFFRACTION (1.9 Å)
主引用文献Native phasing of x-ray free-electron laser data for a G protein-coupled receptor.
Sci Adv, 2, 2016
5KA2
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Protein Tyrosine Phosphatase 1B YAYA (Y152A, Y153A) mutant, open state
分子名称: 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL, CHLORIDE ION, GLYCEROL, ...
著者Choy, M.S, Peti, W, Page, R.
登録日2016-06-01
公開日2017-03-08
最終更新日2024-02-28
実験手法X-RAY DIFFRACTION (2.071 Å)
主引用文献Conformational Rigidity and Protein Dynamics at Distinct Timescales Regulate PTP1B Activity and Allostery.
Mol. Cell, 65, 2017
5JZG
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BU of 5jzg by Molmil
CryoEM structure of the native empty particle of a human rhinovirus C
分子名称: Capsid protein VP0, Capsid protein VP1, Capsid protein VP3
著者Liu, Y, Hill, M.G, Klose, T, Chen, Z, Watters, K.E, Jiang, W, Palmenberg, A.C, Rossmann, M.G.
登録日2016-05-16
公開日2016-07-13
最終更新日2024-03-06
実験手法ELECTRON MICROSCOPY (3.16 Å)
主引用文献Atomic structure of a rhinovirus C, a virus species linked to severe childhood asthma.
Proc.Natl.Acad.Sci.USA, 113, 2016
8EWV
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BU of 8ewv by Molmil
DNA-encoded library (DEL)-enabled discovery of proximity inducing small molecules
分子名称: Bromodomain-containing protein 4, Elongin-B, Elongin-C, ...
著者Schreiber, S.L, Shu, W, Ma, X, Michaud, G, Bonazzi, S, Berst, F.
登録日2022-10-24
公開日2023-10-04
最終更新日2024-02-14
実験手法X-RAY DIFFRACTION (3.4 Å)
主引用文献DNA-encoded library-enabled discovery of proximity-inducing small molecules.
Nat.Chem.Biol., 20, 2024
6JM5
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Crystal structure of TBC1D23 C terminal domain
分子名称: SODIUM ION, TBC1 domain family member 23
著者Sun, Q, Huang, W.
登録日2019-03-07
公開日2019-10-16
最終更新日2024-03-27
実験手法X-RAY DIFFRACTION (1.6 Å)
主引用文献Structural and functional studies of TBC1D23 C-terminal domain provide a link between endosomal trafficking and PCH.
Proc.Natl.Acad.Sci.USA, 116, 2019
5K7H
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Crystal structure of AibR in complex with the effector molecule isovaleryl coenzyme A
分子名称: CHLORIDE ION, Isovaleryl-coenzyme A, NICKEL (II) ION, ...
著者Bock, T, Volz, C, Mueller, R, Blankenfeldt, W.
登録日2016-05-26
公開日2016-12-21
最終更新日2024-01-10
実験手法X-RAY DIFFRACTION (2.35 Å)
主引用文献The AibR-isovaleryl coenzyme A regulator and its DNA binding site - a model for the regulation of alternative de novo isovaleryl coenzyme A biosynthesis in Myxococcus xanthus.
Nucleic Acids Res., 45, 2017
5KAC
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BU of 5kac by Molmil
Protein Tyrosine Phosphatase 1B P185G mutant, open state
分子名称: 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL, CHLORIDE ION, GLYCEROL, ...
著者Choy, M.S, Machado, L.E.S.F, Peti, W, Page, R.
登録日2016-06-01
公開日2017-03-08
最終更新日2023-09-27
実験手法X-RAY DIFFRACTION (1.9 Å)
主引用文献Conformational Rigidity and Protein Dynamics at Distinct Timescales Regulate PTP1B Activity and Allostery.
Mol. Cell, 65, 2017
5K2C
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BU of 5k2c by Molmil
1.9 angstrom A2a adenosine receptor structure with sulfur SAD phasing and phase extension using XFEL data
分子名称: (2R)-2,3-dihydroxypropyl (9Z)-octadec-9-enoate, 4-{2-[(7-amino-2-furan-2-yl[1,2,4]triazolo[1,5-a][1,3,5]triazin-5-yl)amino]ethyl}phenol, Adenosine receptor A2a/Soluble cytochrome b562 chimera, ...
著者Batyuk, A, Galli, L, Ishchenko, A, Han, G.W, Gati, C, Popov, P, Lee, M.-Y, Stauch, B, White, T.A, Barty, A, Aquila, A, Hunter, M.S, Liang, M, Boutet, S, Pu, M, Liu, Z.-J, Nelson, G, James, D, Li, C, Zhao, Y, Spence, J.C.H, Liu, W, Fromme, P, Katritch, V, Weierstall, U, Stevens, R.C, Cherezov, V, GPCR Network (GPCR)
登録日2016-05-18
公開日2016-09-21
最終更新日2018-11-28
実験手法X-RAY DIFFRACTION (1.9 Å)
主引用文献Native phasing of x-ray free-electron laser data for a G protein-coupled receptor.
Sci Adv, 2, 2016
5KA3
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Protein Tyrosine Phosphatase 1B YAYA (Y152A, Y153A) mutant in complex with TCS401, closed state
分子名称: 2-(OXALYL-AMINO)-4,5,6,7-TETRAHYDRO-THIENO[2,3-C]PYRIDINE-3-CARBOXYLIC ACID, 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL, CHLORIDE ION, ...
著者Choy, M.S, Peti, W, Page, R.
登録日2016-06-01
公開日2017-03-08
最終更新日2023-09-27
実験手法X-RAY DIFFRACTION (2.141 Å)
主引用文献Conformational Rigidity and Protein Dynamics at Distinct Timescales Regulate PTP1B Activity and Allostery.
Mol. Cell, 65, 2017
5KFA
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BU of 5kfa by Molmil
Human DNA polymerase eta-DNA ternary complex: ground state at pH7.0 (K+ MES) with 1 Ca2+ ion
分子名称: 2'-DEOXYADENOSINE 5'-TRIPHOSPHATE, CALCIUM ION, DNA (5'-D(*AP*GP*CP*GP*TP*CP*AP*T)-3'), ...
著者Gao, Y, Yang, W.
登録日2016-06-12
公開日2016-06-22
最終更新日2023-09-27
実験手法X-RAY DIFFRACTION (1.51 Å)
主引用文献Capture of a third Mg2+ is essential for catalyzing DNA synthesis.
Science, 352, 2016
5KFJ
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BU of 5kfj by Molmil
Human DNA polymerase eta-DNA ternary complex: reaction with 10 mM Mn2+ for 180s
分子名称: 2'-DEOXYADENOSINE 5'-TRIPHOSPHATE, CALCIUM ION, DIPHOSPHATE, ...
著者Gao, Y, Yang, W.
登録日2016-06-12
公開日2016-06-22
最終更新日2023-09-27
実験手法X-RAY DIFFRACTION (1.7 Å)
主引用文献Capture of a third Mg2+ is essential for catalyzing DNA synthesis.
Science, 352, 2016
5KFV
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BU of 5kfv by Molmil
Human DNA polymerase eta R61A-DNA ternary complex: reaction with 1 mM Mg2+ for 140s
分子名称: 2'-DEOXYADENOSINE 5'-TRIPHOSPHATE, CALCIUM ION, DNA (5'-D(*AP*GP*CP*GP*TP*CP*AP*T)-3'), ...
著者Gao, Y, Yang, W.
登録日2016-06-12
公開日2016-06-22
最終更新日2023-09-27
実験手法X-RAY DIFFRACTION (1.6 Å)
主引用文献Capture of a third Mg2+ is essential for catalyzing DNA synthesis.
Science, 352, 2016
5KG7
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BU of 5kg7 by Molmil
Human DNA polymerase eta-DNA ternary complex: reaction first with 1 mM Mn2+ for 1800s then with 10 mM Zn2+ for 60s
分子名称: 2'-DEOXYADENOSINE 5'-TRIPHOSPHATE, DIPHOSPHATE, DNA (5'-D(*AP*GP*CP*GP*TP*CP*AP*TP*A)-3'), ...
著者Gao, Y, Yang, W.
登録日2016-06-12
公開日2016-06-22
最終更新日2023-09-27
実験手法X-RAY DIFFRACTION (1.75 Å)
主引用文献Capture of a third Mg2+ is essential for catalyzing DNA synthesis.
Science, 352, 2016
8EY4
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BU of 8ey4 by Molmil
Contact-dependent growth inhibition toxin-immunity protein complex from E. coli O32:H37
分子名称: Cys_rich_CPCC domain-containing protein, FE (III) ION, PT-VENN domain-containing protein
著者Michalska, K, Stols, L, Eschenfeldt, W, Goulding, C.W, Hayes, C.S, Joachimiak, A, Midwest Center for Structural Genomics (MCSG), Center for Structural Genomics of Infectious Diseases (CSGID)
登録日2022-10-26
公開日2023-11-08
最終更新日2023-11-15
実験手法X-RAY DIFFRACTION (1.83 Å)
主引用文献Contact-dependent growth inhibition toxin-immunity protein complex from E. coli O32:H37
To Be Published
8F2O
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BU of 8f2o by Molmil
Phi-29 expanded, DNA-packaged fiberless prohead
分子名称: Major capsid protein
著者Woodson, M.E, Morais, M.C, Jardine, P.J, Zhang, W.
登録日2022-11-08
公開日2023-11-15
実験手法ELECTRON MICROSCOPY (3 Å)
主引用文献Scaffold Oligomers Control Prohead Expansion
To Be Published
8F2N
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BU of 8f2n by Molmil
Phi-29 partially-expanded fiberless prohead
分子名称: Major capsid protein
著者Woodson, M.E, Morais, M.C, Scott, S.D, Choi, K.H, Jardine, P.J, Zhang, W.
登録日2022-11-08
公開日2023-11-15
実験手法ELECTRON MICROSCOPY (3 Å)
主引用文献Phi-29 partially-expanded fiberless prohead
To Be Published
8F3W
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BU of 8f3w by Molmil
Crystal structure of Penicillin Binding Protein 5 (PBP5) PAPAPAP variant penicillin bound form from Enterococcus faecium
分子名称: OPEN FORM - PENICILLIN G, Penicillin binding protein 5, SULFATE ION
著者Schoenle, M.V, D'Andrea, E.D, Choy, M.S, Peti, W, Page, R.
登録日2022-11-10
公開日2023-11-15
最終更新日2024-03-13
実験手法X-RAY DIFFRACTION (3 Å)
主引用文献The Molecular Basis for Resistance of E. faecium PBP5 to beta-lactam antibiotics
To Be Published
8F3X
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BU of 8f3x by Molmil
Crystal structure of Penicillin Binding Protein 5 (PBP5) Poly-Gly variant apo form from Enterococcus faecium
分子名称: Penicillin binding protein 5, SULFATE ION
著者Schoenle, M.V, D'Andrea, E.D, Choy, M.S, Peti, W, Page, R.
登録日2022-11-10
公開日2023-11-15
実験手法X-RAY DIFFRACTION (3.4 Å)
主引用文献The Molecular Basis for Resistance of E. faecium PBP5 to beta-lactam antibiotics
To Be Published
8F3Y
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BU of 8f3y by Molmil
Crystal structure of Penicillin Binding Protein 5 (PBP5) Poly-Gly variant penicillin bound form from Enterococcus faecium
分子名称: OPEN FORM - PENICILLIN G, Penicillin binding protein 5, SULFATE ION
著者Schoenle, M.V, D'Andrea, E.D, Choy, M.S, Peti, W, Page, R.
登録日2022-11-10
公開日2023-11-15
最終更新日2024-03-13
実験手法X-RAY DIFFRACTION (2.99 Å)
主引用文献The Molecular Basis for Resistance of E. faecium PBP5 to beta-lactam antibiotics
To Be Published
8EY3
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BU of 8ey3 by Molmil
Contact-dependent growth inhibition (CDI) immunity protein from E. coli O32:H37
分子名称: Cys_rich_CPCC domain-containing protein, FE (III) ION, SODIUM ION
著者Michalska, K, Stols, L, Eschenfeldt, W, Goulding, C.W, Hayes, C.S, Joachimiak, A, Midwest Center for Structural Genomics (MCSG), Center for Structural Genomics of Infectious Diseases (CSGID)
登録日2022-10-26
公開日2023-11-08
実験手法X-RAY DIFFRACTION (1 Å)
主引用文献Contact-dependent growth inhibition (CDI) immunity protein from E. coli O32:H37
To Be Published
8F3V
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BU of 8f3v by Molmil
Crystal structure of Penicillin Binding Protein 5 (PBP5) PAPAPAP variant apo form from Enterococcus faecium
分子名称: Penicillin binding protein 5, SULFATE ION
著者Schoenle, M.V, D'Andrea, E.D, Choy, M.S, Peti, W, Page, R.
登録日2022-11-10
公開日2023-11-15
実験手法X-RAY DIFFRACTION (3.1 Å)
主引用文献The Molecular Basis for Resistance of E. faecium PBP5 to beta-lactam antibiotics
To Be Published
7KQN
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BU of 7kqn by Molmil
Ternary complex of TERT (telomerase reverse transcriptase) with RNA template, DNA primer, an incoming dGTP and a downstream hybrid duplex
分子名称: 1,2-ETHANEDIOL, 2'-DEOXYGUANOSINE-5'-TRIPHOSPHATE, 2-(N-MORPHOLINO)-ETHANESULFONIC ACID, ...
著者Choi, W.S, Weng, P.J, Yang, W.
登録日2020-11-17
公開日2022-03-23
最終更新日2023-10-18
実験手法X-RAY DIFFRACTION (2.02 Å)
主引用文献Flexibility of telomerase in binding the RNA template and DNA telomeric repeat.
Proc.Natl.Acad.Sci.USA, 119, 2022
5K1J
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BU of 5k1j by Molmil
Human TTR altered by a rhenium tris-carbonyl Pyta-C8 derivative
分子名称: 1,2-ETHANEDIOL, ACETATE ION, DIMETHYL SULFOXIDE, ...
著者Stura, E.A, Ciccone, L, Shepard, W.
登録日2016-05-18
公開日2016-07-20
最終更新日2024-01-10
実験手法X-RAY DIFFRACTION (1.69 Å)
主引用文献Human TTR conformation altered by rhenium tris-carbonyl derivatives.
J.Struct.Biol., 195, 2016

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件を2024-08-07に公開中

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