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PDB: 12479 results

4DFM
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Crystal structure of the large fragment of DNA polymerase I from Thermus aquaticus in ternary complex with 5-(aminopentinyl)-2-dCTP
Descriptor: 1,2-ETHANEDIOL, 5'-d(AAAGCGCGCCGTGGTC)-3', 5'-d(GACCACGGCGC ddG)-3', ...
Authors:Bergen, K, Steck, A, Struett, S, Baccaro, A, Welte, W, Diederichs, K, Marx, A.
Deposit date:2012-01-24
Release date:2012-05-16
Last modified:2023-09-13
Method:X-RAY DIFFRACTION (1.886 Å)
Cite:Structures of KlenTaq DNA Polymerase Caught While Incorporating C5-Modified Pyrimidine and C7-Modified 7-Deazapurine Nucleoside Triphosphates.
J.Am.Chem.Soc., 134, 2012
4I6Z
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BU of 4i6z by Molmil
Crystal structure of the transcriptional regulator TM1030 with 24bp DNA oligonucleotide
Descriptor: DNA OLIGONUCLEOTIDE, Transcriptional regulator, TetR family
Authors:Koclega, K.D, Chruszcz, M, Cooper, D.R, Petkowski, J.J, Tkaczuk, K.L, Joachimiak, A, Minor, W, Midwest Center for Structural Genomics (MCSG)
Deposit date:2012-11-30
Release date:2013-01-02
Last modified:2023-12-06
Method:X-RAY DIFFRACTION (3.2 Å)
Cite:Crystal structure of the transcriptional regulator TM1030 with 24bp DNA oligonucleotide
To be Published
4DZD
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BU of 4dzd by Molmil
Crystal structure of the CRISPR-associated protein Cas6e from Escherichia coli str. K-12
Descriptor: GLYCEROL, Uncharacterized protein ygcH
Authors:Wei, J, Huang, G, Wang, Y, Gong, W.
Deposit date:2012-03-01
Release date:2013-03-06
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (1.999 Å)
Cite:Crystal Structure of endoribonuclease Cas6e from Escherichia coli
To be Published
4IAR
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BU of 4iar by Molmil
Crystal structure of the chimeric protein of 5-HT1B-BRIL in complex with ergotamine (PSI Community Target)
Descriptor: (2S)-2,3-dihydroxypropyl (9Z)-octadec-9-enoate, Chimera protein of human 5-hydroxytryptamine receptor 1B and E. Coli soluble cytochrome b562, Ergotamine
Authors:Wang, C, Jiang, Y, Ma, J, Wu, H, Wacker, D, Katritch, V, Han, G.W, Liu, W, Huang, X, Vardy, E, McCorvy, J.D, Gao, X, Zhou, E.X, Melcher, K, Zhang, C, Bai, F, Yang, H, Yang, L, Jiang, H, Roth, B.L, Cherezov, V, Stevens, R.C, Xu, H.E, GPCR Network (GPCR)
Deposit date:2012-12-07
Release date:2013-03-13
Last modified:2023-09-20
Method:X-RAY DIFFRACTION (2.7 Å)
Cite:Structural basis for molecular recognition at serotonin receptors.
Science, 340, 2013
8UEU
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BU of 8ueu by Molmil
In-situ complex I, Deactive class03
Descriptor: (1S)-2-{[{[(2R)-2,3-DIHYDROXYPROPYL]OXY}(HYDROXY)PHOSPHORYL]OXY}-1-[(PALMITOYLOXY)METHYL]ETHYL STEARATE, 1,2-DIACYL-SN-GLYCERO-3-PHOSPHOCHOLINE, 1,2-Distearoyl-sn-glycerophosphoethanolamine, ...
Authors:Zheng, W, Zhu, J, Zhang, K.
Deposit date:2023-10-02
Release date:2024-06-19
Method:ELECTRON MICROSCOPY (3.6 Å)
Cite:High-resolution in situ structures of mammalian respiratory supercomplexes.
Nature, 2024
8UGE
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BU of 8uge by Molmil
In-situ complex III, state II
Descriptor: 1,2-DIACYL-SN-GLYCERO-3-PHOSPHOCHOLINE, 1,2-Distearoyl-sn-glycerophosphoethanolamine, CARDIOLIPIN, ...
Authors:Zheng, W, Zhang, K, Zhu, J.
Deposit date:2023-10-05
Release date:2024-06-19
Method:ELECTRON MICROSCOPY (3.5 Å)
Cite:High-resolution in situ structures of mammalian respiratory supercomplexes.
Nature, 2024
4HXB
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BU of 4hxb by Molmil
Crystal structure of 6B9 FAB
Descriptor: 6B9 FAB HEAVY CHAIN, 6B9 FAB LIGHT CHAIN, CALCIUM ION
Authors:Johal, A.R, Jarrell, H.C, Khieu, N.H, Letts, J.A, Landry, R.C, Jachymek, W, Yang, Q, Jennings, H.J, Brisson, J.R, Evans, S.V.
Deposit date:2012-11-09
Release date:2013-07-24
Last modified:2024-04-03
Method:X-RAY DIFFRACTION (2.45 Å)
Cite:The antigen-binding site of an N-propionylated polysialic acid-specific antibody protective against group B meningococci is consistent with extended epitopes.
Glycobiology, 23, 2013
4D5C
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BU of 4d5c by Molmil
tetracycline repressor class J, apo form
Descriptor: SULFATE ION, TETRACYCLINE REPRESSOR PROTEIN TETR
Authors:Palm, G.J, Quast, J, Hinrichs, W.
Deposit date:2014-11-03
Release date:2016-01-20
Last modified:2024-05-08
Method:X-RAY DIFFRACTION (1.7 Å)
Cite:Domain Movement in Tetracycline Repressor Classes
To be Published
4D0A
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BU of 4d0a by Molmil
3D EM map of the sodium proton antiporter MjNhaP1 from Methanocaldococcus jannaschii
Descriptor: NA(+)/H(+) ANTIPORTER 1
Authors:Paulino, C, Woehlert, D, Yildiz, O, Kuhlbrandt, W.
Deposit date:2014-04-25
Release date:2014-12-10
Last modified:2023-12-20
Method:ELECTRON CRYSTALLOGRAPHY (6 Å)
Cite:3D Em Map of the Sodium Proton Antiporter Mjnhap1 from Methanocaldococcus Jannaschii
Elife, 3, 2014
4D3Y
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BU of 4d3y by Molmil
The structure of inactive prolegumain from chinese hamster.
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, GLYCEROL, LEGUMAIN
Authors:Li, W, Heinz, D.W, Krausze, J.
Deposit date:2014-10-24
Release date:2016-01-20
Last modified:2023-12-20
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:A Detailed Look Into Chinese Hamster Legumain Active Site Structure and Exploration of its Function
To be Published
4D0Q
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BU of 4d0q by Molmil
Hyaluronan Binding Module of the Streptococcal Pneumoniae Hyaluronate Lyase
Descriptor: 1,2-ETHANEDIOL, HYALURONATE LYASE
Authors:Suits, M.D.L, Pluvinage, B, Law, A, Liu, Y, Palma, A.S, Chai, W, Feizi, T, Boraston, A.B.
Deposit date:2014-04-29
Release date:2014-08-06
Last modified:2024-05-08
Method:X-RAY DIFFRACTION (1.2 Å)
Cite:Conformational Analysis of the Streptococcus Pneumoniae Hyaluronate Lyase and Characterization of its Hyaluronan-Specific Carbohydrate-Binding Module.
J.Biol.Chem., 289, 2014
4D5P
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BU of 4d5p by Molmil
Hypocrea jecorina cellobiohydrolase Cel7A E217Q soaked with xylopentaose.
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, CELLULOSE 1,4-BETA-CELLOBIOSIDASE, COBALT (II) ION, ...
Authors:Momeni, M.H, Ubhayasekera, W, Stahlberg, J, Hansson, H.
Deposit date:2014-11-07
Release date:2015-03-25
Last modified:2023-12-20
Method:X-RAY DIFFRACTION (1.89 Å)
Cite:Structural Insights Into the Inhibition of Cellobiohydrolase Cel7A by Xylooligosaccharides.
FEBS J., 282, 2015
4IBJ
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BU of 4ibj by Molmil
Ebola virus VP35 bound to small molecule
Descriptor: 3-{(5S)-3-hydroxy-2-oxo-4-[3-(trifluoromethyl)benzoyl]-5-[3-(trifluoromethyl)phenyl]-2,5-dihydro-1H-pyrrol-1-yl}benzoic acid, Polymerase cofactor VP35
Authors:Brown, C.S, Leung, D.W, Xu, W, Borek, D.M, Otwinowski, Z, Ramanan, P, Stubbs, A.J, Peterson, D.S, Binning, J.M, Amarasinghe, G.K.
Deposit date:2012-12-08
Release date:2014-03-19
Last modified:2024-02-28
Method:X-RAY DIFFRACTION (1.54 Å)
Cite:In Silico Derived Small Molecules Bind the Filovirus VP35 Protein and Inhibit Its Polymerase Cofactor Activity.
J.Mol.Biol., 426, 2014
4D5J
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BU of 4d5j by Molmil
Hypocrea jecorina cellobiohydrolase Cel7A E217Q soaked with xylotriose.
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, CELLULOSE 1,4-BETA-CELLOBIOSIDASE, COBALT (II) ION, ...
Authors:Momeni, M.H, Ubhayasekera, W, Stahlberg, J, Hansson, H.
Deposit date:2014-11-05
Release date:2015-03-25
Last modified:2023-12-20
Method:X-RAY DIFFRACTION (1.5 Å)
Cite:Structural Insights Into the Inhibition of Cellobiohydrolase Cel7A by Xylooligosaccharides.
FEBS J., 282, 2015
8WD2
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BU of 8wd2 by Molmil
The Crystal Structure of p53 from Biortus.
Descriptor: 1,2-ETHANEDIOL, Cellular tumor antigen p53, PHOSPHATE ION, ...
Authors:Wang, F, Cheng, W, Yuan, Z, Qi, J, Lu, Y.
Deposit date:2023-09-14
Release date:2023-10-04
Method:X-RAY DIFFRACTION (1.85 Å)
Cite:The Crystal Structure of p53 from Biortus.
To Be Published
8WF7
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BU of 8wf7 by Molmil
The Crystal Structure of integrase from Biortus
Descriptor: ACETATE ION, Integrase, SULFATE ION
Authors:Wang, F, Cheng, W, Yuan, Z, Qi, J, Li, J.
Deposit date:2023-09-19
Release date:2023-10-04
Method:X-RAY DIFFRACTION (1.55 Å)
Cite:The Crystal Structure of integrase from Biortus
To Be Published
8WWX
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BU of 8wwx by Molmil
Ube1L acts akin to a mitt, that mediates UbcH8 binding and orchestrates "E1-E2" interaction
Descriptor: Ubiquitin-like modifier-activating enzyme 7
Authors:Dag, C, Elgin, E.S, Lee, W, Ziarek, J.J.
Deposit date:2023-10-27
Release date:2023-11-08
Last modified:2024-05-15
Method:SOLUTION NMR
Cite:Ube1L acts akin to a mitt, that mediates UbcH8 binding and orchestrates "E1-E2" interaction
To Be Published
4IGV
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BU of 4igv by Molmil
Crystal structure of kirola (Act d 11)
Descriptor: CHLORIDE ION, Kirola, UNKNOWN LIGAND
Authors:Chruszcz, M, Ciardiello, M.A, Giangrieco, I, Osinski, T, Minor, W.
Deposit date:2012-12-18
Release date:2013-09-04
Last modified:2024-02-28
Method:X-RAY DIFFRACTION (1.5 Å)
Cite:Structural and bioinformatic analysis of the kiwifruit allergen Act d 11, a member of the family of ripening-related proteins.
Mol.Immunol., 56, 2013
8WRB
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BU of 8wrb by Molmil
Lysophosphatidylserine receptor GPR34-Gi complex
Descriptor: Antibody fragment scFv16, CHOLESTEROL, Guanine nucleotide-binding protein G(I)/G(S)/G(O) subunit gamma-2, ...
Authors:Gong, W, Liu, G, Li, X, Wang, Y, Zhang, X.
Deposit date:2023-10-13
Release date:2023-11-08
Last modified:2023-12-20
Method:ELECTRON MICROSCOPY (2.91 Å)
Cite:Structural basis for ligand recognition and signaling of the lysophosphatidylserine receptors GPR34 and GPR174.
Plos Biol., 21, 2023
8WR8
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BU of 8wr8 by Molmil
The Crystal Structure of cGAS from Biortus
Descriptor: Cyclic GMP-AMP synthase
Authors:Wang, F, Cheng, W, Yuan, Z, Lin, D, Guo, S.
Deposit date:2023-10-13
Release date:2023-11-15
Method:X-RAY DIFFRACTION (3.1 Å)
Cite:The Crystal Structure of cGAS from Biortus
To Be Published
4CRF
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BU of 4crf by Molmil
Creating novel F1 inhibitors through fragment based lead generation and structure aided drug design
Descriptor: CHLORIDE ION, Coagulation factor XIa light chain, GLYCEROL, ...
Authors:Sandmark, J, Oster, L, Fjellstrom, O, Akkaya, S, Beisel, H.G, Eriksson, P.O, Erixon, K, Gustafsson, D, Jurva, U, Kang, D, Karis, D, Knecht, W, Nerme, V, Nilsson, I, Olsson, T, Redzic, A, Roth, R, Tigerstrom, A.
Deposit date:2014-02-26
Release date:2015-02-11
Last modified:2022-05-04
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Creating Novel Activated Factor Xi Inhibitors Through Fragment Based Lead Generation and Structure Aided Drug Design.
Plos One, 10, 2015
4IHR
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BU of 4ihr by Molmil
Crystal structure of recombinant kirola (Act d 11)
Descriptor: CHLORIDE ION, Kirola, UNKNOWN LIGAND
Authors:Osinski, T, Majorek, K.A, Ciardiello, M.A, Chruszcz, M, Minor, W.
Deposit date:2012-12-19
Release date:2013-09-04
Last modified:2023-09-20
Method:X-RAY DIFFRACTION (1.6 Å)
Cite:Structural and bioinformatic analysis of the kiwifruit allergen Act d 11, a member of the family of ripening-related proteins.
Mol.Immunol., 56, 2013
4IBI
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BU of 4ibi by Molmil
Ebola virus VP35 bound to small molecule
Descriptor: 3-{(2S)-2-(7-chloro-1,3-benzodioxol-5-yl)-4-hydroxy-5-oxo-3-[3-(trifluoromethyl)benzoyl]-2,5-dihydro-1H-pyrrol-1-yl}benzoic acid, Polymerase cofactor VP35
Authors:Brown, C.S, Leung, D.W, Xu, W, Borek, D.M, Otwinowski, Z, Ramanan, P, Stubbs, A.J, Peterson, D.S, Binning, J.M, Amarasinghe, G.K.
Deposit date:2012-12-08
Release date:2014-03-19
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (1.473 Å)
Cite:In Silico Derived Small Molecules Bind the Filovirus VP35 Protein and Inhibit Its Polymerase Cofactor Activity.
J.Mol.Biol., 426, 2014
8WTF
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BU of 8wtf by Molmil
The Crystal Structure of IRAK4 from Biortus
Descriptor: 1,2-ETHANEDIOL, 1-{[(2S,3S,4S)-3-ethyl-4-fluoro-5-oxopyrrolidin-2-yl]methoxy}-7-methoxyisoquinoline-6-carboxamide, Interleukin-1 receptor-associated kinase 4, ...
Authors:Wang, F, Cheng, W, Lv, Z, Meng, Q, Xu, Y.
Deposit date:2023-10-18
Release date:2023-11-15
Method:X-RAY DIFFRACTION (2 Å)
Cite:The Crystal Structure of IRAK4 from Biortus
To Be Published
8WR5
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BU of 8wr5 by Molmil
The Crystal Structure of Mms2 from Biortus
Descriptor: 1,2-ETHANEDIOL, SULFATE ION, Ubiquitin-conjugating enzyme E2 variant 2
Authors:Wang, F, Cheng, W, Yuan, Z, Lin, D, Guo, S.
Deposit date:2023-10-13
Release date:2023-11-15
Method:X-RAY DIFFRACTION (1.7 Å)
Cite:The Crystal Structure of Mms2 from Biortus.
To Be Published

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PDB entries from 2024-07-10

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