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PDB: 116 results

1EFR
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BU of 1efr by Molmil
BOVINE MITOCHONDRIAL F1-ATPASE COMPLEXED WITH THE PEPTIDE ANTIBIOTIC EFRAPEPTIN
Descriptor: ADENOSINE-5'-DIPHOSPHATE, BOVINE MITOCHONDRIAL F1-ATPASE SUBUNIT ALPHA, BOVINE MITOCHONDRIAL F1-ATPASE SUBUNIT BETA, ...
Authors:Abrahams, J.P, Buchanan, S.K, Van Raaij, M.J, Fearnley, I.M, Leslie, A.G.W, Walker, J.E.
Deposit date:1996-05-24
Release date:1997-02-12
Last modified:2023-08-09
Method:X-RAY DIFFRACTION (3.1 Å)
Cite:The Structure of Bovine F1-ATPase Complexed with the Peptide Antibiotic Efrapeptin.
Proc.Natl.Acad.Sci.USA, 93, 1996
2BSF
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BU of 2bsf by Molmil
Structure of the C-terminal receptor-binding domain of avian reovirus fibre sigmaC, Zn crystal form.
Descriptor: SIGMA C CAPSID PROTEIN, SULFATE ION, ZINC ION
Authors:Guardado Calvo, P, Fox, G.C, Hermo Parrado, X.L, Llamas-Saiz, A.L, van Raaij, M.J.
Deposit date:2005-05-20
Release date:2005-11-03
Last modified:2024-05-08
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Structure of the Carboxy-Terminal Receptor-Binding Domain of Avian Reovirus Fibre Sigmac
J.Mol.Biol., 354, 2005
1PDI
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BU of 1pdi by Molmil
Fitting of the C-terminal part of the short tail fibers into the cryo-EM reconstruction of T4 baseplate
Descriptor: Short tail fiber protein
Authors:Kostyuchenko, V.A, Leiman, P.G, Chipman, P.R, Kanamaru, S, van Raaij, M.J, Arisaka, F, Mesyanzhinov, V.V, Rossmann, M.G.
Deposit date:2003-05-19
Release date:2003-09-09
Last modified:2024-02-14
Method:ELECTRON MICROSCOPY (12 Å)
Cite:Three-dimensional structure of bacteriophage T4 baseplate
Nat.Struct.Biol., 10, 2003
1OCY
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BU of 1ocy by Molmil
Structure of the receptor-binding domain of the bacteriophage T4 short tail fibre
Descriptor: BACTERIOPHAGE T4 SHORT TAIL FIBRE, CITRIC ACID, SULFATE ION, ...
Authors:Thomassen, E, Gielen, G, Schuetz, M, Miller, S, van Raaij, M.J.
Deposit date:2003-02-11
Release date:2003-07-24
Last modified:2024-05-08
Method:X-RAY DIFFRACTION (1.5 Å)
Cite:The Structure of the Receptor-Binding Domain of the Bacteriophage T4 Short Tail Fibre Reveals a Knitted Trimeric Metal-Binding Fold
J.Mol.Biol., 331, 2003
5M9F
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BU of 5m9f by Molmil
Structure of the two C-terminal domains of bacteriophage K gp144
Descriptor: ACETATE ION, ORF68, SODIUM ION
Authors:Liu, A, Nguyen, T.H, van Raaij, M.J.
Deposit date:2016-11-01
Release date:2017-12-20
Last modified:2024-05-08
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Crystal Structure of a Putative Receptor-Binding Protein of Staphylococcus Virus K
To Be Published
6SFE
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BU of 6sfe by Molmil
CRYSTAL STRUCTURE OF DHQ1 FROM SALMONELLA TYPHI COVALENTLY MODIFIED BY COMPOUND 7
Descriptor: (1~{S},3~{S},4~{S},5~{R})-3-(aminomethyl)-3,4,5-tris(hydroxyl)cyclohexane-1-carboxylic acid, 3-dehydroquinate dehydratase
Authors:Sanz-Gaitero, M, Lence, E, Maneiro, M, Thompson, R, Hawkins, A.R, Gonzalez-Bello, C, van Raaij, M.J.
Deposit date:2019-08-01
Release date:2020-04-15
Last modified:2024-01-24
Method:X-RAY DIFFRACTION (1.08 Å)
Cite:Self-Immolation of a Bacterial Dehydratase Enzyme by its Epoxide Product.
Chemistry, 26, 2020
6SFH
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BU of 6sfh by Molmil
CRYSTAL STRUCTURE OF DHQ1 FROM Staphylococcus aureus COVALENTLY MODIFIED BY LIGAND 7
Descriptor: (1~{S},3~{S},4~{S},5~{R})-3-(aminomethyl)-3,4,5-tris(hydroxyl)cyclohexane-1-carboxylic acid, 3-dehydroquinate dehydratase, LITHIUM ION, ...
Authors:Sanz-Gaitero, M, Lence, E, Maneiro, M, Thompson, R, Hawkins, A.R, Gonzalez-Bello, C, van Raaij, M.J.
Deposit date:2019-08-01
Release date:2020-04-15
Last modified:2020-07-08
Method:X-RAY DIFFRACTION (1.73 Å)
Cite:Self-Immolation of a Bacterial Dehydratase Enzyme by its Epoxide Product.
Chemistry, 26, 2020
5NBH
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BU of 5nbh by Molmil
Structure of the distal domain of mouse adenovirus 2 fibre, P212121 native
Descriptor: Fiber, GLYCEROL
Authors:Singh, A.K, van Raaij, M.J.
Deposit date:2017-03-01
Release date:2018-03-14
Last modified:2024-01-17
Method:X-RAY DIFFRACTION (1.7 Å)
Cite:Structure and N-acetylglucosamine binding of the distal domain of mouse adenovirus 2 fibre.
J. Gen. Virol., 99, 2018
5NC1
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BU of 5nc1 by Molmil
Structure of the distal domain of mouse adenovirus 2 fibre bound to N-acetyl-glucosamine
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, Fiber, GLYCEROL, ...
Authors:Singh, A.K, van Raaij, M.J.
Deposit date:2017-03-03
Release date:2018-03-14
Last modified:2024-01-17
Method:X-RAY DIFFRACTION (2 Å)
Cite:Structure and N-acetylglucosamine binding of the distal domain of mouse adenovirus 2 fibre.
J. Gen. Virol., 99, 2018
6SFG
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BU of 6sfg by Molmil
CRYSTAL STRUCTURE OF DHQ1 FROM SALMONELLA TYPHI COVALENTLY MODIFIED BY COMPOUND 9
Descriptor: (1~{R},3~{S},4~{R},5~{R})-3-methyl-4,5-bis(hydroxyl)cyclohexane-1-carboxylic acid, (1~{S},3~{R},4~{S},5~{R})-3-methyl-3,4,5-tris(hydroxyl)cyclohexane-1-carboxylic Acid, 3-dehydroquinate dehydratase
Authors:Sanz-Gaitero, M, Lence, E, Maneiro, M, Thompson, R, Hawkins, A.R, Gonzalez-Bello, C, van Raaij, M.J.
Deposit date:2019-08-01
Release date:2020-04-15
Last modified:2024-01-24
Method:X-RAY DIFFRACTION (1.23 Å)
Cite:Self-Immolation of a Bacterial Dehydratase Enzyme by its Epoxide Product.
Chemistry, 26, 2020
5FX0
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BU of 5fx0 by Molmil
Fasciola hepatica calcium binding protein FhCaBP2: Structure of the dynein light chain-like domain. P6422 native.
Descriptor: CALCIUM BINDING PROTEIN
Authors:Nguyen, T.H, Thomas, C.M, Timson, D.J, van Raaij, M.J.
Deposit date:2016-02-22
Release date:2016-04-27
Last modified:2024-01-10
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Fasciola hepatica calcium-binding protein FhCaBP2: structure of the dynein light chain-like domain.
Parasitol. Res., 115, 2016
5FJL
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BU of 5fjl by Molmil
Crystal structure of raptor adenovirus 1 fibre head, wild-type form
Descriptor: CHLORIDE ION, FIBER PROTEIN
Authors:Nguyen, T.H, van Raaij, M.J.
Deposit date:2015-10-09
Release date:2016-06-29
Last modified:2024-01-10
Method:X-RAY DIFFRACTION (1.47 Å)
Cite:Crystal Structure of Raptor Adenovirus 1 Fibre Head and Role of the Beta-Hairpin in Siadenovirus Fibre Head Domains
Virol.J., 13, 2016
5AQ5
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BU of 5aq5 by Molmil
Structure of the Carboxy-Terminal Domain of the Bacteriophage T5 L- Shaped Tail Fibre
Descriptor: L-SHAPED TAIL FIBER PROTEIN PB8
Authors:Garcia-Doval, C, Granell, M, van Raaij, M.J.
Deposit date:2015-09-19
Release date:2015-12-16
Last modified:2024-01-10
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Structure of the Receptor-Binding Carboxy-Terminal Domain of the Bacteriophage T5 L-Shaped Tail Fibre with and without Its Intra-Molecular Chaperone.
Viruses, 7, 2015
5FLD
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BU of 5fld by Molmil
Crystal structure of raptor adenovirus 1 fibre head, beta-hairpin deleted form
Descriptor: CHLORIDE ION, FIBER PROTEIN
Authors:Nguyen, T.H, van Raaij, M.J.
Deposit date:2015-10-23
Release date:2016-06-29
Last modified:2024-05-08
Method:X-RAY DIFFRACTION (1.7 Å)
Cite:Crystal structure of raptor adenovirus 1 fibre head and role of the beta-hairpin in siadenovirus fibre head domains.
Virol. J., 13, 2016
5G5N
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BU of 5g5n by Molmil
Structure of the snake adenovirus 1 hexon-interlacing LH3 protein, methylmercury chloride derivative
Descriptor: CHLORIDE ION, GLYCEROL, LH3 HEXON-INTERLACING CAPSID PROTEIN, ...
Authors:Nguyen, T.H, Singh, A.K, Albala-Perez, B, van Raaij, M.J.
Deposit date:2016-05-26
Release date:2017-06-07
Last modified:2024-05-08
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Structure of a Reptilian Adenovirus Reveals a Phage Tailspike Fold Stabilizing a Vertebrate Virus Capsid.
Structure, 25, 2017
5FWZ
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BU of 5fwz by Molmil
Fasciola hepatica calcium binding protein FhCaBP2: Structure of the dynein light chain-like domain. P41212 mercury derivative.
Descriptor: CALCIUM BINDING PROTEIN, CHLORIDE ION, MERCURY (II) ION
Authors:Nguyen, T.H, Thomas, C.M, Timson, D.J, van Raaij, M.J.
Deposit date:2016-02-22
Release date:2016-04-27
Last modified:2024-05-08
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Fasciola hepatica calcium-binding protein FhCaBP2: structure of the dynein light chain-like domain.
Parasitol. Res., 115, 2016
5G5O
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BU of 5g5o by Molmil
Structure of the snake adenovirus 1 hexon-interlacing LH3 protein, native
Descriptor: ACETATE ION, CHLORIDE ION, GLYCEROL, ...
Authors:Nguyen, T.H, Singh, A.K, Albala-Perez, B, van Raaij, M.J.
Deposit date:2016-05-26
Release date:2017-06-07
Last modified:2024-01-10
Method:X-RAY DIFFRACTION (2 Å)
Cite:Structure of a Reptilian Adenovirus Reveals a Phage Tailspike Fold Stabilizing a Vertebrate Virus Capsid.
Structure, 25, 2017
6H5J
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BU of 6h5j by Molmil
Crystal structure of DHQ1 from Salmonella typhi covalently modified by ligand 4
Descriptor: (3~{R})-3,4,5-tris(hydroxyl)cyclohexane-1-carboxylic acid, 3-dehydroquinate dehydratase
Authors:Otero, J.M, Maneiro, M, Lence, E, Sanz-Gaitero, M, Thompson, P, Hawkins, A.R, Gonzalez-Bello, C, van Raaij, M.J.
Deposit date:2018-07-24
Release date:2019-07-24
Last modified:2019-10-09
Method:X-RAY DIFFRACTION (1.4 Å)
Cite:Hydroxylammonium Derivatives for Selective Active-site Lysine Modification in the Anti-virulence Bacterial Target DHQ1 Enzyme.
Org Chem Front, 6, 2019
6H5C
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BU of 6h5c by Molmil
Crystal structure of DHQ1 from Salmonella typhi covalently modified by ligand 1
Descriptor: (1~{S},3~{R},4~{S},5~{R})-3-methyl-3,4,5-tris(hydroxyl)cyclohexane-1-carboxylic Acid, 3-dehydroquinate dehydratase
Authors:Sanz-Gaitero, M, Maneiro, M, Lence, E, Otero, J.M, Thompson, P, Hawkins, A.R, Gonzalez-Bello, C, van Raaij, M.J.
Deposit date:2018-07-24
Release date:2019-07-24
Last modified:2024-01-17
Method:X-RAY DIFFRACTION (1.14 Å)
Cite:Hydroxylammonium Derivatives for Selective Active-site Lysine Modification in the Anti-virulence Bacterial Target DHQ1 Enzyme.
Org Chem Front, 9, 2019
6H5D
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BU of 6h5d by Molmil
Crystal structure of DHQ1 from Salmonella typhi covalently modified by ligand 2
Descriptor: (1~{S},3~{S},4~{R},5~{R})-3-methyl-1,4,5-tris(hydroxyl)cyclohexane-1-carboxylic acid, 3-dehydroquinate dehydratase
Authors:Sanz-Gaitero, M, Maneiro, M, Lence, E, Otero, J.M, Thompson, P, Hawkins, A.R, Gonzalez-Bello, C, van Raaij, M.J.
Deposit date:2018-07-24
Release date:2019-07-24
Last modified:2024-01-17
Method:X-RAY DIFFRACTION (1.25 Å)
Cite:Hydroxylammonium Derivatives for Selective Active-site Lysine Modification in the Anti-virulence Bacterial Target DHQ1 Enzyme.
Org Chem Front, 9, 2019
3J4B
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BU of 3j4b by Molmil
Structure of T7 gatekeeper protein (gp11)
Descriptor: Tail tubular protein A
Authors:Cuervo, A, Pulido-Cid, M, Chagoyen, M, Arranz, R, Gonzalez-Garcia, V.A, Garcia-Doval, C, Caston, J.R, Valpuesta, J.M, van Raaij, M.J, Martin-Benito, J, Carrascosa, J.L.
Deposit date:2013-07-09
Release date:2013-08-07
Last modified:2024-02-21
Method:ELECTRON MICROSCOPY (12 Å)
Cite:Structural characterization of the bacteriophage t7 tail machinery.
J.Biol.Chem., 288, 2013
6H5G
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BU of 6h5g by Molmil
Crystal structure of DHQ1 from Salmonella typhi covalently modified by ligand 3
Descriptor: (1~{R},3~{S},4~{R},5~{R})-3-methyl-4,5-bis(hydroxyl)cyclohexane-1-carboxylic acid, 3-dehydroquinate dehydratase
Authors:Sanz-Gaitero, M, Maneiro, M, Lence, E, Otero, J.M, Thompson, P, Hawkins, A.R, Gonzalez-Bello, C, van Raaij, M.J.
Deposit date:2018-07-24
Release date:2019-07-24
Last modified:2024-01-17
Method:X-RAY DIFFRACTION (1.04 Å)
Cite:Hydroxylammonium Derivatives for Selective Active-site Lysine Modification in the Anti-virulence Bacterial Target DHQ1 Enzyme.
Org Chem Front, 6, 2019
2BT8
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BU of 2bt8 by Molmil
Structure of the C-terminal receptor-binding domain of avian reovirus fibre sigmaC, space group P6322.
Descriptor: SIGMA C
Authors:Guardado Calvo, P, Fox, G.C, Hermo Parrado, X.L, Llamas-Saiz, A.L, van Raaij, M.J.
Deposit date:2005-05-26
Release date:2005-11-03
Last modified:2024-05-08
Method:X-RAY DIFFRACTION (3 Å)
Cite:Structure of the Carboxy-Terminal Receptor-Binding Domain of Avian Reovirus Fibre Sigmac
J.Mol.Biol., 354, 2005
2BT7
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BU of 2bt7 by Molmil
Structure of the C-terminal receptor-binding domain of avian reovirus fibre sigmaC, Cd crystal form
Descriptor: CADMIUM ION, SIGMA C, SULFATE ION
Authors:Guardado Calvo, P, Fox, G.C, Hermo Parrado, X.L, Llamas-Saiz, A.L, van Raaij, M.J.
Deposit date:2005-05-26
Release date:2005-11-03
Last modified:2024-05-08
Method:X-RAY DIFFRACTION (2.35 Å)
Cite:Structure of the Carboxy-Terminal Receptor-Binding Domain of Avian Reovirus Fibre Sigmac
J.Mol.Biol., 354, 2005
3J4A
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BU of 3j4a by Molmil
Structure of gp8 connector protein
Descriptor: Head-to-tail joining protein
Authors:Cuervo, A, Pulido-Cid, M, Chagoyen, M, Arranz, R, Gonzalez-Garcia, V.A, Garcia-Doval, C, Caston, J.R, Valpuesta, J.M, van Raaij, M.J, Martin-Benito, J, Carrascosa, J.L.
Deposit date:2013-07-09
Release date:2013-08-07
Last modified:2024-02-21
Method:ELECTRON MICROSCOPY (12 Å)
Cite:Structural characterization of the bacteriophage t7 tail machinery.
J.Biol.Chem., 288, 2013

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數據於2024-07-24公開中

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