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PDB: 537 件
3VGW
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BU of 3vgw by Molmil
Crystal structure of monoAc-biotin-avidin complex
分子名称: 2-acetamido-2-deoxy-beta-D-glucopyranose, 5-[(3aS,4S,6aR)-1-acetyl-2-oxohexahydro-1H-thieno[3,4-d]imidazol-4-yl]pentanoic acid, Avidin, ...
著者Terai, T, Maki, E, Sugiyama, S, Takahashi, Y, Matsumura, H, Mori, Y, Nagano, T.
登録日2011-08-21
公開日2011-12-28
最終更新日2023-11-08
実験手法X-RAY DIFFRACTION (1.6 Å)
主引用文献Rational development of caged-biotin protein-labeling agents and some applications in live cells
Chem.Biol., 18, 2011
3VHH
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BU of 3vhh by Molmil
Crystal structure of DiMe-biotin-avidin complex
分子名称: 2-acetamido-2-deoxy-beta-D-glucopyranose, 5-[(3aS,4S,6aR)-1,3-dimethyl-2-oxohexahydro-1H-thieno[3,4-d]imidazol-4-yl]pentanoic acid, Avidin, ...
著者Terai, T, Maki, E, Sugiyama, S, Takahashi, Y, Matsumura, H, Mori, Y, Nagano, T.
登録日2011-08-25
公開日2011-12-28
最終更新日2023-11-08
実験手法X-RAY DIFFRACTION (2.26 Å)
主引用文献Rational development of caged-biotin protein-labeling agents and some applications in live cells
Chem.Biol., 18, 2011
7ZCS
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BU of 7zcs by Molmil
Nitrite-bound MSOX movie series dataset 65 (52 MGy) of the copper nitrite reductase from Bradyrhizobium sp. ORS 375 (two-domain) - water ligand (final)
分子名称: COPPER (II) ION, Copper-containing nitrite reductase, GLYCEROL, ...
著者Rose, S.L, Baba, S, Okumura, H, Antonyuk, S.V, Sasaki, D, Tosha, T, Kumasaka, T, Eady, R.R, Yamamoto, M, Hasnain, S.S.
登録日2022-03-28
公開日2022-08-03
最終更新日2024-01-31
実験手法X-RAY DIFFRACTION (1.61 Å)
主引用文献Single crystal spectroscopy and multiple structures from one crystal (MSOX) define catalysis in copper nitrite reductases.
Proc.Natl.Acad.Sci.USA, 119, 2022
7ZCP
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BU of 7zcp by Molmil
Nitrite-bound MSOX movie series dataset 17 (13.6 MGy) of the copper nitrite reductase from Bradyrhizobium sp. ORS 375 (two-domain) - nitric oxide (NO) intermediate
分子名称: COPPER (II) ION, Copper-containing nitrite reductase, GLYCEROL, ...
著者Rose, S.L, Baba, S, Okumura, H, Antonyuk, S.V, Sasaki, D, Tosha, T, Kumasaka, T, Eady, R.R, Yamamoto, M, Hasnain, S.S.
登録日2022-03-28
公開日2022-08-03
最終更新日2024-01-31
実験手法X-RAY DIFFRACTION (1.29 Å)
主引用文献Single crystal spectroscopy and multiple structures from one crystal (MSOX) define catalysis in copper nitrite reductases.
Proc.Natl.Acad.Sci.USA, 119, 2022
7ZCR
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BU of 7zcr by Molmil
Nitrite-bound MSOX movie series dataset 38 (30.4 MGy) of the copper nitrite reductase from Bradyrhizobium sp. ORS 375 (two-domain) - water ligand
分子名称: COPPER (II) ION, Copper-containing nitrite reductase, GLYCEROL, ...
著者Rose, S.L, Baba, S, Okumura, H, Antonyuk, S.V, Sasaki, D, Tosha, T, Kumasaka, T, Eady, R.R, Yamamoto, M, Hasnain, S.S.
登録日2022-03-28
公開日2022-08-03
最終更新日2024-01-31
実験手法X-RAY DIFFRACTION (1.45 Å)
主引用文献Single crystal spectroscopy and multiple structures from one crystal (MSOX) define catalysis in copper nitrite reductases.
Proc.Natl.Acad.Sci.USA, 119, 2022
7ZCO
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BU of 7zco by Molmil
Nitrite-bound MSOX movie series dataset 8 (6.4 MGy) of the copper nitrite reductase from Bradyrhizobium sp. ORS 375 (two-domain) - nitrite/NO intermediate
分子名称: COPPER (II) ION, Copper-containing nitrite reductase, GLYCEROL, ...
著者Rose, S.L, Baba, S, Okumura, H, Antonyuk, S.V, Sasaki, D, Tosha, T, Kumasaka, T, Eady, R.R, Yamamoto, M, Hasnain, S.S.
登録日2022-03-28
公開日2022-08-03
最終更新日2024-01-31
実験手法X-RAY DIFFRACTION (1.22 Å)
主引用文献Single crystal spectroscopy and multiple structures from one crystal (MSOX) define catalysis in copper nitrite reductases.
Proc.Natl.Acad.Sci.USA, 119, 2022
7ZCN
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BU of 7zcn by Molmil
Nitrite-bound MSOX movie series dataset 1 (0.8 MGy) of the copper nitrite reductase from Bradyrhizobium sp. ORS 375 (two-domain) - nitrite (start)
分子名称: COPPER (II) ION, Copper-containing nitrite reductase, GLYCEROL, ...
著者Rose, S.L, Baba, S, Okumura, H, Antonyuk, S.V, Sasaki, D, Tosha, T, Kumasaka, T, Eady, R.R, Yamamoto, M, Hasnain, S.S.
登録日2022-03-28
公開日2022-08-03
最終更新日2024-01-31
実験手法X-RAY DIFFRACTION (1.19 Å)
主引用文献Single crystal spectroscopy and multiple structures from one crystal (MSOX) define catalysis in copper nitrite reductases.
Proc.Natl.Acad.Sci.USA, 119, 2022
7ZCQ
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BU of 7zcq by Molmil
Nitrite-bound MSOX movie series dataset 25 (20 MGy) of the copper nitrite reductase from Bradyrhizobium sp. ORS 375 (two-domain) - NO/water intermediate
分子名称: COPPER (II) ION, Copper-containing nitrite reductase, GLYCEROL, ...
著者Rose, S.L, Baba, S, Okumura, H, Antonyuk, S.V, Sasaki, D, Tosha, T, Kumasaka, T, Eady, R.R, Yamamoto, M, Hasnain, S.S.
登録日2022-03-28
公開日2022-08-03
最終更新日2024-01-31
実験手法X-RAY DIFFRACTION (1.35 Å)
主引用文献Single crystal spectroscopy and multiple structures from one crystal (MSOX) define catalysis in copper nitrite reductases.
Proc.Natl.Acad.Sci.USA, 119, 2022
3VHI
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BU of 3vhi by Molmil
Crystal structure of monoZ-biotin-avidin complex
分子名称: 2-acetamido-2-deoxy-beta-D-glucopyranose, 5-{(3aS,4S,6aR)-1-[(benzyloxy)carbonyl]-2-oxohexahydro-1H-thieno[3,4-d]imidazol-4-yl}pentanoic acid, Avidin, ...
著者Terai, T, Maki, E, Sugiyama, S, Takahashi, Y, Matsumura, H, Mori, Y, Nagano, T.
登録日2011-08-25
公開日2011-12-28
最終更新日2023-11-08
実験手法X-RAY DIFFRACTION (1.76 Å)
主引用文献Rational development of caged-biotin protein-labeling agents and some applications in live cells
Chem.Biol., 18, 2011
3VI2
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BU of 3vi2 by Molmil
Crystal Structure Analysis of Plasmodium falciparum OMP Decarboxylase in complex with inhibitor HMOA
分子名称: 4-(2-hydroxy-4-methoxyphenyl)-4-oxobutanoic acid, Orotidine 5'-phosphate decarboxylase, SODIUM ION
著者Takashima, Y, Mizohata, E, Krungkrai, S.R, Matsumura, H, Krungkrai, J, Horii, T, Inoue, T.
登録日2011-09-16
公開日2012-08-01
最終更新日2024-03-20
実験手法X-RAY DIFFRACTION (2.1 Å)
主引用文献The in silico screening and X-ray structure analysis of the inhibitor complex of Plasmodium falciparum orotidine 5'-monophosphate decarboxylase
J.Biochem., 152, 2012
3VHM
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BU of 3vhm by Molmil
Crystal structure of NPC-biotin-avidin complex
分子名称: 2-acetamido-2-deoxy-beta-D-glucopyranose, 5-[(3aS,4R,6aR)-1-{[(1R)-1-(6-nitro-1,3-benzodioxol-5-yl)ethoxy]carbonyl}-2-oxohexahydro-1H-thieno[3,4-d]imidazol-4-yl]pentanoic acid, Avidin, ...
著者Terai, T, Maki, E, Sugiyama, S, Takahashi, Y, Matsumura, H, Mori, Y, Nagano, T.
登録日2011-08-29
公開日2011-12-28
最終更新日2020-07-29
実験手法X-RAY DIFFRACTION (2 Å)
主引用文献Rational development of caged-biotin protein-labeling agents and some applications in live cells
Chem.Biol., 18, 2011
1PKF
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BU of 1pkf by Molmil
Crystal Structure of Epothilone D-bound Cytochrome P450epoK
分子名称: EPOTHILONE D, PROTOPORPHYRIN IX CONTAINING FE, cytochrome p450EpoK
著者Nagano, S, Li, H, Shimizu, H, Nishida, C, Ogura, H, Ortiz de Montellano, P.R, Poulos, T.L.
登録日2003-06-05
公開日2003-10-28
最終更新日2024-02-14
実験手法X-RAY DIFFRACTION (2.1 Å)
主引用文献Crystal Structures of Epothilone D-bound, Epothilone B-bound, and Substrate-free Forms of Cytochrome P450epoK
J.Biol.Chem., 278, 2003
4YSD
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BU of 4ysd by Molmil
Room temperature structure of copper nitrite reductase from Geobacillus thermodenitrificans
分子名称: ACETIC ACID, COPPER (II) ION, Nitrite reductase
著者Fukuda, Y, Tse, K.M, Suzuki, M, Diederichs, K, Hirata, K, Nakane, T, Sugahara, M, Nango, E, Tono, K, Joti, Y, Kameshima, T, Song, C, Hatsui, T, Yabashi, M, Nureki, O, Matsumura, H, Inoue, T, Iwata, S, Mizohata, E.
登録日2015-03-17
公開日2016-02-24
最終更新日2024-03-20
実験手法X-RAY DIFFRACTION (1.35 Å)
主引用文献Redox-coupled structural changes in nitrite reductase revealed by serial femtosecond and microfocus crystallography
J.Biochem., 159, 2016
4YSQ
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BU of 4ysq by Molmil
Structure of copper nitrite reductase from Geobacillus thermodenitrificans - 8.38 MGy
分子名称: (4S)-2-METHYL-2,4-PENTANEDIOL, COPPER (II) ION, Nitrite reductase, ...
著者Fukuda, Y, Tse, K.M, Suzuki, M, Diederichs, K, Hirata, K, Nakane, T, Sugahara, M, Nango, E, Tono, K, Joti, Y, Kameshima, T, Song, C, Hatsui, T, Yabashi, M, Nureki, O, Matsumura, H, Inoue, T, Iwata, S, Mizohata, E.
登録日2015-03-17
公開日2016-02-24
最終更新日2024-03-20
実験手法X-RAY DIFFRACTION (1.5 Å)
主引用文献Redox-coupled structural changes in nitrite reductase revealed by serial femtosecond and microfocus crystallography
J.Biochem., 159, 2016
3WQT
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BU of 3wqt by Molmil
Staphylococcus aureus FtsA complexed with AMPPNP
分子名称: CHLORIDE ION, Cell division protein FtsA, MAGNESIUM ION, ...
著者Fujita, J, Maeda, Y, Miyazaki, Y, Inoue, T, Matsumura, H.
登録日2014-02-01
公開日2014-10-08
最終更新日2024-03-20
実験手法X-RAY DIFFRACTION (2.2 Å)
主引用文献Crystal structure of FtsA from Staphylococcus aureus
FEBS Lett., 588, 2014
8J9F
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BU of 8j9f by Molmil
Structure of STG-hydrolyzing beta-glucosidase 1 (PSTG1)
分子名称: Beta-glucosidase, GLYCEROL
著者Yanai, T, Imaizumi, R, Takahashi, Y, Katsumura, E, Yamamoto, M, Nakayama, T, Yamashita, S, Takeshita, K, Sakai, N, Matsuura, H.
登録日2023-05-03
公開日2024-04-10
最終更新日2024-07-17
実験手法X-RAY DIFFRACTION (2.85 Å)
主引用文献Structural insights into a bacterial beta-glucosidase capable of degrading sesaminol triglucoside to produce sesaminol: toward the understanding of the aglycone recognition mechanism by the C-terminal lid domain.
J.Biochem., 174, 2023
4YST
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BU of 4yst by Molmil
Structure of copper nitrite reductase from Geobacillus thermodenitrificans - 24.9 MGy
分子名称: (4S)-2-METHYL-2,4-PENTANEDIOL, COPPER (II) ION, Nitrite reductase, ...
著者Fukuda, Y, Tse, K.M, Suzuki, M, Diederichs, K, Hirata, K, Nakane, T, Sugahara, M, Nango, E, Tono, K, Joti, Y, Kameshima, T, Song, C, Hatsui, T, Yabashi, M, Nureki, O, Matsumura, H, Inoue, T, Iwata, S, Mizohata, E.
登録日2015-03-17
公開日2016-02-24
最終更新日2024-03-20
実験手法X-RAY DIFFRACTION (1.34 Å)
主引用文献Redox-coupled structural changes in nitrite reductase revealed by serial femtosecond and microfocus crystallography
J.Biochem., 159, 2016
3WQU
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BU of 3wqu by Molmil
Staphylococcus aureus FtsA complexed with ATP
分子名称: ADENOSINE-5'-TRIPHOSPHATE, Cell division protein FtsA, MAGNESIUM ION
著者Fujita, J, Maeda, Y, Miyazaki, Y, Inoue, T, Matsumura, H.
登録日2014-02-01
公開日2014-10-08
最終更新日2024-03-20
実験手法X-RAY DIFFRACTION (2.8 Å)
主引用文献Crystal structure of FtsA from Staphylococcus aureus
FEBS Lett., 588, 2014
3WT1
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BU of 3wt1 by Molmil
Crystal structure of the b'-a' domain of thermophilic fungal protein disulfide isomerase (reduced form)
分子名称: GLYCEROL, Protein disulfide-isomerase
著者Inagaki, K, Satoh, T, Itoh, S.G, Okumura, H, Kato, K.
登録日2014-04-02
公開日2014-11-26
最終更新日2023-11-08
実験手法X-RAY DIFFRACTION (1.85 Å)
主引用文献Redox-dependent conformational transition of catalytic domain of protein disulfide isomerase indicated by crystal structure-based molecular dynamics simulation
Chem.Phys.Lett., 618, 2015
1Q5D
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BU of 1q5d by Molmil
Epothilone B-bound Cytochrome P450epoK
分子名称: 7,11-DIHYDROXY-8,8,10,12,16-PENTAMETHYL-3-[1-METHYL-2-(2-METHYL-THIAZOL-4-YL)VINYL]-4,17-DIOXABICYCLO[14.1.0]HEPTADECANE-5,9-DIONE, P450 epoxidase, PROTOPORPHYRIN IX CONTAINING FE
著者Nagano, S, Li, H, Shimizu, H, Nishida, C, Ogura, H, Ortiz de Montellano, P.R, Poulos, T.L.
登録日2003-08-06
公開日2003-10-28
最終更新日2024-04-03
実験手法X-RAY DIFFRACTION (1.93 Å)
主引用文献Crystal structures of epothilone D-bound, epothilone B-bound, and substrate-free forms of cytochrome P450epoK
J.Biol.Chem., 278, 2003
1Q5E
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BU of 1q5e by Molmil
Substrate-free Cytochrome P450epoK
分子名称: P450 epoxidase, PROTOPORPHYRIN IX CONTAINING FE
著者Nagano, S, Li, H, Shimizu, H, Nishida, C, Ogura, H, Ortiz de Montellano, P.R, Poulos, T.L.
登録日2003-08-06
公開日2003-10-28
最終更新日2024-04-03
実験手法X-RAY DIFFRACTION (2.65 Å)
主引用文献Crystal structures of epothilone D-bound, epothilone B-bound, and substrate-free forms of cytochrome P450epoK
J.Biol.Chem., 278, 2003
3WQO
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BU of 3wqo by Molmil
Crystal structure of D-tagatose 3-epimerase-like protein
分子名称: MANGANESE (II) ION, Uncharacterized protein MJ1311
著者Uechi, K, Takata, G, Yoneda, K, Ohshima, T, Sakuraba, H.
登録日2014-01-28
公開日2014-07-09
最終更新日2024-03-20
実験手法X-RAY DIFFRACTION (2.64 Å)
主引用文献Structure of D-tagatose 3-epimerase-like protein from Methanocaldococcus jannaschii
Acta Crystallogr.,Sect.F, 70, 2014
4YSP
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BU of 4ysp by Molmil
Structure of copper nitrite reductase from Geobacillus thermodenitrificans - 8.32 MGy
分子名称: (4S)-2-METHYL-2,4-PENTANEDIOL, COPPER (II) ION, Nitrite reductase, ...
著者Fukuda, Y, Tse, K.M, Suzuki, M, Diedrichs, K, Hirata, K, Nakane, T, Sugahara, M, Nango, E, Tono, K, Joti, Y, Kameshima, T, Song, C, Hatsui, T, Yabashi, M, Nureki, O, Matsumura, H, Inoue, T, Iwata, S, Mizohata, E.
登録日2015-03-17
公開日2016-02-24
最終更新日2024-03-20
実験手法X-RAY DIFFRACTION (1.34 Å)
主引用文献Redox-coupled structural changes in nitrite reductase revealed by serial femtosecond and microfocus crystallography
J.Biochem., 159, 2016
5AY8
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BU of 5ay8 by Molmil
Crystal structure of human nucleosome containing H3.Y
分子名称: CHLORIDE ION, DNA (146-MER), H3.Y, ...
著者Kujirai, T, Horikoshi, N, Sato, K, Maehara, K, Machida, S, Osakabe, A, Kimura, H, Ohkawa, Y, Kurumizaka, H.
登録日2015-08-10
公開日2016-04-06
最終更新日2023-11-08
実験手法X-RAY DIFFRACTION (2.8 Å)
主引用文献Structure and function of human histone H3.Y nucleosome
Nucleic Acids Res., 44, 2016
4YSS
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BU of 4yss by Molmil
Structure of copper nitrite reductase from Geobacillus thermodenitrificans - 16.7 MGy
分子名称: (4S)-2-METHYL-2,4-PENTANEDIOL, COPPER (II) ION, Nitrite reductase, ...
著者Fukuda, Y, Tse, K.M, Suzuki, M, Diedrichs, K, Hirata, K, Nakane, T, Sugahara, M, Nango, E, Tono, K, Joti, Y, Kameshima, T, Song, C, Hatsui, T, Yabashi, M, Nureki, O, Matsumura, H, Inoue, T, Iwata, S, Mizohata, E.
登録日2015-03-17
公開日2016-02-24
最終更新日2024-03-20
実験手法X-RAY DIFFRACTION (1.5 Å)
主引用文献Redox-coupled structural changes in nitrite reductase revealed by serial femtosecond and microfocus crystallography
J.Biochem., 159, 2016

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