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PDB: 115 results

6UVK
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BU of 6uvk by Molmil
OXA-48 bound by inhibitor CDD-97
Descriptor: 1,2-ETHANEDIOL, 1-{4-[4-(2-ethoxyphenyl)piperazin-1-yl]-1,3,5-triazin-2-yl}piperidine-4-carboxylic acid, Beta-lactamase, ...
Authors:Taylor, D.M, Hu, L, Prasad, B.V.V, Sankaran, B, Palzkill, T.G.
Deposit date:2019-11-02
Release date:2020-05-06
Last modified:2023-11-15
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Identifying Oxacillinase-48 Carbapenemase Inhibitors Using DNA-Encoded Chemical Libraries.
Acs Infect Dis., 6, 2020
7R6Z
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BU of 7r6z by Molmil
OXA-48 bound by Compound 3.3
Descriptor: 1,2-ETHANEDIOL, 4-amino-5-hydroxynaphthalene-2,7-disulfonic acid, Beta-lactamase, ...
Authors:Taylor, D.M, Hu, L, Prasad, B.V.V, Sankaran, B, Palzkill, T.
Deposit date:2021-06-24
Release date:2021-12-01
Last modified:2023-11-15
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Unique Diacidic Fragments Inhibit the OXA-48 Carbapenemase and Enhance the Killing of Escherichia coli Producing OXA-48.
Acs Infect Dis., 7, 2021
4V7H
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BU of 4v7h by Molmil
Structure of the 80S rRNA and proteins and P/E tRNA for eukaryotic ribosome based on cryo-EM map of Thermomyces lanuginosus ribosome at 8.9A resolution
Descriptor: 18S rRNA, 26S ribosomal RNA, 40S ribosomal protein S0(A), ...
Authors:Taylor, D.J, Devkota, B, Huang, A.D, Topf, M, Narayanan, E, Sali, A, Harvey, S.C, Frank, J.
Deposit date:2009-09-22
Release date:2014-07-09
Last modified:2024-02-28
Method:ELECTRON MICROSCOPY (8.9 Å)
Cite:Comprehensive molecular structure of the eukaryotic ribosome.
Structure, 17, 2009
6XQR
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BU of 6xqr by Molmil
OXA-48 bound by Compound 2.2
Descriptor: Beta-lactamase, CHLORIDE ION, [1,1'-biphenyl]-4,4'-disulfonic acid
Authors:Taylor, D.M, Hu, L, Prasad, B.V.V, Palzkill, T.
Deposit date:2020-07-10
Release date:2021-12-15
Last modified:2023-11-15
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Unique Diacidic Fragments Inhibit the OXA-48 Carbapenemase and Enhance the Killing of Escherichia coli Producing OXA-48.
Acs Infect Dis., 7, 2021
2P8W
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BU of 2p8w by Molmil
Fitted structure of eEF2 in the 80S:eEF2:GDPNP cryo-EM reconstruction
Descriptor: Elongation factor 2, Elongation factor Tu-B, PHOSPHOAMINOPHOSPHONIC ACID-GUANYLATE ESTER
Authors:Taylor, D.J, Nilsson, J, Merrill, A.R, Andersen, G.R, Nissen, P, Frank, J.
Deposit date:2007-03-23
Release date:2007-05-08
Last modified:2019-12-18
Method:ELECTRON MICROSCOPY (11.3 Å)
Cite:Structures of modified eEF2.80S ribosome complexes reveal the role of GTP hydrolysis in translocation.
Embo J., 26, 2007
2P8X
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BU of 2p8x by Molmil
Fitted structure of ADPR-eEF2 in the 80S:ADPR-eEF2:GDPNP cryo-EM reconstruction
Descriptor: ADENOSINE-5-DIPHOSPHORIBOSE, Elongation factor 2, Elongation factor Tu-B, ...
Authors:Taylor, D.J, Nilsson, J, Merrill, A.R, Andersen, G.R, Nissen, P, Frank, J.
Deposit date:2007-03-23
Release date:2007-05-08
Last modified:2019-12-18
Method:ELECTRON MICROSCOPY (9.7 Å)
Cite:Structures of modified eEF2.80S ribosome complexes reveal the role of GTP hydrolysis in translocation.
Embo J., 26, 2007
2P8Z
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BU of 2p8z by Molmil
Fitted structure of ADPR-eEF2 in the 80S:ADPR-eEF2:GDPNP:sordarin cryo-EM reconstruction
Descriptor: ADENOSINE-5-DIPHOSPHORIBOSE, Elongation factor 2, Elongation factor Tu-B, ...
Authors:Taylor, D.J, Nilsson, J, Merrill, A.R, Andersen, G.R, Nissen, P, Frank, J.
Deposit date:2007-03-23
Release date:2007-05-08
Last modified:2019-12-18
Method:ELECTRON MICROSCOPY (8.9 Å)
Cite:Structures of modified eEF2.80S ribosome complexes reveal the role of GTP hydrolysis in translocation.
Embo J., 26, 2007
2P8Y
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BU of 2p8y by Molmil
Fitted structure of ADPR-eEF2 in the 80S:ADPR-eEF2:GDP:sordarin cryo-EM reconstruction
Descriptor: ADENOSINE-5-DIPHOSPHORIBOSE, Elongation factor 2, GUANOSINE-5'-DIPHOSPHATE, ...
Authors:Taylor, D.J, Nilsson, J, Merrill, A.R, Andersen, G.R, Nissen, P, Frank, J.
Deposit date:2007-03-23
Release date:2007-05-08
Last modified:2019-12-18
Method:ELECTRON MICROSCOPY (11.7 Å)
Cite:Structures of modified eEF2.80S ribosome complexes reveal the role of GTP hydrolysis in translocation.
Embo J., 26, 2007
4CLN
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BU of 4cln by Molmil
STRUCTURE OF A RECOMBINANT CALMODULIN FROM DROSOPHILA MELANOGASTER REFINED AT 2.2-ANGSTROMS RESOLUTION
Descriptor: CALCIUM ION, CALMODULIN
Authors:Taylor, D.A, Sack, J.S, Maune, J.F, Beckingham, K, Quiocho, F.A.
Deposit date:1991-06-24
Release date:1992-07-15
Last modified:2024-02-28
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Structure of a recombinant calmodulin from Drosophila melanogaster refined at 2.2-A resolution.
J.Biol.Chem., 266, 1991
7K5V
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BU of 7k5v by Molmil
OXA-48 bound by Compound 3.1
Descriptor: 1,2-ETHANEDIOL, Beta-lactamase, CHLORIDE ION, ...
Authors:Taylor, D.M, Hu, L, Prasad, B.V.V, Palzkill, T.
Deposit date:2020-09-17
Release date:2021-12-01
Last modified:2023-11-15
Method:X-RAY DIFFRACTION (2.8 Å)
Cite:Unique Diacidic Fragments Inhibit the OXA-48 Carbapenemase and Enhance the Killing of Escherichia coli Producing OXA-48.
Acs Infect Dis., 7, 2021
7L8O
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BU of 7l8o by Molmil
OXA-48 bound by Compound 4.3
Descriptor: 1,2-ETHANEDIOL, 9H-fluorene-2,7-disulfonate, Beta-lactamase, ...
Authors:Taylor, D.M, Hu, L, Prasad, B.V.V, Palzkill, T.
Deposit date:2020-12-31
Release date:2021-12-01
Last modified:2023-11-15
Method:X-RAY DIFFRACTION (2.7 Å)
Cite:Unique Diacidic Fragments Inhibit the OXA-48 Carbapenemase and Enhance the Killing of Escherichia coli Producing OXA-48.
Acs Infect Dis., 7, 2021
7JHQ
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BU of 7jhq by Molmil
OXA-48 bound by Compound 2.3
Descriptor: 1,2-ETHANEDIOL, Beta-lactamase OXA-48, CHLORIDE ION, ...
Authors:Taylor, D.M, Hu, L, Prasad, B.V.V, Palzkill, T.
Deposit date:2020-07-21
Release date:2021-12-01
Last modified:2023-11-15
Method:X-RAY DIFFRACTION (2 Å)
Cite:Unique Diacidic Fragments Inhibit the OXA-48 Carbapenemase and Enhance the Killing of Escherichia coli Producing OXA-48.
Acs Infect Dis., 7, 2021
8FZR
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BU of 8fzr by Molmil
CryoEM structure of yeast Arginyltransferase 1 (ATE1)
Descriptor: Arg tRNA, Arginyl-tRNA--protein transferase 1, ZINC ION
Authors:Huang, W, Zhang, Y, Taylor, D.J.
Deposit date:2023-01-29
Release date:2023-04-26
Last modified:2024-05-01
Method:ELECTRON MICROSCOPY (3.6 Å)
Cite:The structural basis of tRNA recognition by arginyl-tRNA-protein transferase.
Nat Commun, 14, 2023
8EW5
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BU of 8ew5 by Molmil
The structure of flightin within myosin thick filaments from Bombus ignitus flight muscle
Descriptor: Flightin
Authors:Li, J, Rahmani, H, Abbasi Yeganeh, F, Rastegarpouyani, H, Taylor, D.W, Wood, N.B, Previs, M.J, Iwamoto, H, Taylor, K.A.
Deposit date:2022-10-21
Release date:2023-01-04
Last modified:2024-06-19
Method:ELECTRON MICROSCOPY (6 Å)
Cite:Structure of the Flight Muscle Thick Filament from the Bumble Bee, Bombus ignitus , at 6 angstrom Resolution.
Int J Mol Sci, 24, 2022
7MEJ
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BU of 7mej by Molmil
CryoEM structure of SARS-CoV-2 RBD in complex with nanobodies Nb21 and Nb36
Descriptor: Nanobody Nb21, Nanobody Nb36, Spike protein S1
Authors:Huang, W, Taylor, D.J.
Deposit date:2021-04-06
Release date:2021-08-11
Last modified:2024-11-20
Method:ELECTRON MICROSCOPY (3.55 Å)
Cite:Potent neutralizing nanobodies resist convergent circulating variants of SARS-CoV-2 by targeting diverse and conserved epitopes
Nat Commun, 12, 2021
7ME7
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BU of 7me7 by Molmil
CryoEM structure of SARS-CoV-2 RBD in complex with nanobodies Nb17 and Nb105
Descriptor: Nanobody Nb105, Nanobody Nb17, Spike protein S1
Authors:Huang, W, Taylor, D.J.
Deposit date:2021-04-06
Release date:2021-08-11
Last modified:2024-10-23
Method:ELECTRON MICROSCOPY (3.73 Å)
Cite:Potent neutralizing nanobodies resist convergent circulating variants of SARS-CoV-2 by targeting diverse and conserved epitopes
Nat Commun, 12, 2021
7MDW
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BU of 7mdw by Molmil
CryoEM structure of SARS-CoV-2 RBD in complex with nanobodies Nb21 and Nb105
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, Spike protein S1, nanobody Nb105, ...
Authors:Huang, W, Taylor, D.J.
Deposit date:2021-04-06
Release date:2021-08-11
Last modified:2024-11-20
Method:ELECTRON MICROSCOPY (3.58 Å)
Cite:Potent neutralizing nanobodies resist convergent circulating variants of SARS-CoV-2 by targeting diverse and conserved epitopes
Nat Commun, 12, 2021
2QQP
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BU of 2qqp by Molmil
Crystal Structure of Authentic Providence Virus
Descriptor: CALCIUM ION, RNA (5'-R(*UP*UP*UP*U)-3'), p81
Authors:Speir, J.A, Taylor, D.J, Johnson, J.E.
Deposit date:2007-07-26
Release date:2009-01-20
Last modified:2024-02-21
Method:X-RAY DIFFRACTION (3.8 Å)
Cite:Evolution in action: N and C termini of subunits in related T = 4 viruses exchange roles as molecular switches.
Structure, 18, 2010
3J04
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BU of 3j04 by Molmil
EM structure of the heavy meromyosin subfragment of Chick smooth muscle Myosin with regulatory light chain in phosphorylated state
Descriptor: Myosin light polypeptide 6, Myosin regulatory light chain 2, smooth muscle major isoform, ...
Authors:Baumann, B.A.J, Taylor, D, Huang, Z, Tama, F, Fagnant, P.M, Trybus, K, Taylor, K.
Deposit date:2011-02-18
Release date:2011-11-16
Last modified:2024-02-21
Method:ELECTRON MICROSCOPY (20 Å)
Cite:Phosphorylated smooth muscle heavy meromyosin shows an open conformation linked to activation.
J.Mol.Biol., 415, 2012
1I84
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BU of 1i84 by Molmil
CRYO-EM STRUCTURE OF THE HEAVY MEROMYOSIN SUBFRAGMENT OF CHICKEN GIZZARD SMOOTH MUSCLE MYOSIN WITH REGULATORY LIGHT CHAIN IN THE DEPHOSPHORYLATED STATE. ONLY C ALPHAS PROVIDED FOR REGULATORY LIGHT CHAIN. ONLY BACKBONE ATOMS PROVIDED FOR S2 FRAGMENT.
Descriptor: SMOOTH MUSCLE MYOSIN ESSENTIAL LIGHT CHAIN, SMOOTH MUSCLE MYOSIN HEAVY CHAIN, SMOOTH MUSCLE MYOSIN REGULATORY LIGHT CHAIN
Authors:Wendt, T, Taylor, D, Trybus, K.M, Taylor, K.
Deposit date:2001-03-12
Release date:2001-03-28
Last modified:2022-12-21
Method:ELECTRON CRYSTALLOGRAPHY (20 Å)
Cite:Three-dimensional image reconstruction of dephosphorylated smooth muscle heavy meromyosin reveals asymmetry in the interaction between myosin heads and placement of subfragment 2.
Proc.Natl.Acad.Sci.USA, 98, 2001
8SYF
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BU of 8syf by Molmil
Homology model of Acto-HMM complex in ADP-state. Chicken smooth muscle HMM and chicken pectoralis actin
Descriptor: Actin, alpha skeletal muscle, Myosin light polypeptide 6, ...
Authors:Hojjatian, A, Taylor, D.W, Daneshparvar, N, Trybus, K.M, Taylor, K.A.
Deposit date:2023-05-25
Release date:2023-08-30
Last modified:2024-08-07
Method:ELECTRON MICROSCOPY (19 Å)
Cite:Double-headed binding of myosin II to F-actin shows the effect of strain on head structure.
J.Struct.Biol., 215, 2023
1SJJ
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BU of 1sjj by Molmil
Cryo-EM Structure of Chicken Gizzard Smooth Muscle alpha-Actinin
Descriptor: actinin
Authors:Liu, J, Taylor, D.W, Taylor, K.A.
Deposit date:2004-03-03
Release date:2004-03-23
Last modified:2024-02-14
Method:ELECTRON CRYSTALLOGRAPHY (20 Å)
Cite:A 3-D Reconstruction of Smooth Muscle alpha-Actinin by CryoEm Reveals Two Different Conformations at the Actin-binding Region.
J.Mol.Biol., 338, 2004
8TL0
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BU of 8tl0 by Molmil
Structure of activated SAVED-CHAT filament
Descriptor: CHAT domain-containing protein, RNA (5'-R(*AP*AP*A)-3')
Authors:Bravo, J.P.K, Taylor, D.W.
Deposit date:2023-07-26
Release date:2024-03-06
Method:ELECTRON MICROSCOPY (3.1 Å)
Cite:Type III-B CRISPR-Cas cascade of proteolytic cleavages.
Science, 383, 2024
7UO0
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BU of 7uo0 by Molmil
E.coli RNaseP Holoenzyme with Mg2+
Descriptor: CALCIUM ION, Precursor tRNA substrate G(-1) G(-2), RNase P RNA, ...
Authors:Huang, W, Taylor, D.J.
Deposit date:2022-04-12
Release date:2022-09-28
Last modified:2024-06-12
Method:ELECTRON MICROSCOPY (3.4 Å)
Cite:Structural and mechanistic basis for recognition of alternative tRNA precursor substrates by bacterial ribonuclease P.
Nat Commun, 13, 2022
7UO1
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BU of 7uo1 by Molmil
E.coli RNaseP Holoenzyme with Mg2+
Descriptor: CALCIUM ION, E.coli RNase P RNA, Precursor tRNA substrate U(-1) and A(-2), ...
Authors:Huang, W, Taylor, D.J.
Deposit date:2022-04-12
Release date:2022-09-28
Last modified:2024-06-12
Method:ELECTRON MICROSCOPY (3.2 Å)
Cite:Structural and mechanistic basis for recognition of alternative tRNA precursor substrates by bacterial ribonuclease P.
Nat Commun, 13, 2022

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