1IOF
| X-RAY CRYSTALLINE STRUCTURES OF PYRROLIDONE CARBOXYL PEPTIDASE FROM A HYPERTHERMOPHILE, PYROCOCCUS FURIOSUS, AND ITS CYS-FREE MUTANT | 分子名称: | PYRROLIDONE CARBOXYL PEPTIDASE | 著者 | Tanaka, H, Chinami, M, Ota, M, Tsukihara, T, Yutani, K. | 登録日 | 2001-03-09 | 公開日 | 2001-03-21 | 最終更新日 | 2023-10-25 | 実験手法 | X-RAY DIFFRACTION (2.2 Å) | 主引用文献 | X-ray crystalline structures of pyrrolidone carboxyl peptidase from a hyperthermophile, Pyrococcus furiosus, and its cys-free mutant. J.Biochem., 130, 2001
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1ADF
| CRYSTALLOGRAPHIC STUDIES OF TWO ALCOHOL DEHYDROGENASE-BOUND ANALOGS OF THIAZOLE-4-CARBOXAMIDE ADENINE DINUCLEOTIDE (TAD), THE ACTIVE ANABOLITE OF THE ANTITUMOR AGENT TIAZOFURIN | 分子名称: | ALCOHOL DEHYDROGENASE, BETA-METHYLENE-THIAZOLE-4-CARBOXYAMIDE-ADENINE DINUCLEOTIDE, ZINC ION | 著者 | Li, H, Hallows, W.A, Punzi, J.S, Marquez, V.E, Carrell, H.L, Pankiewicz, K.W, Watanabe, K.A, Goldstein, B.M. | 登録日 | 1993-10-18 | 公開日 | 1994-01-31 | 最終更新日 | 2024-02-07 | 実験手法 | X-RAY DIFFRACTION (2.9 Å) | 主引用文献 | Crystallographic studies of two alcohol dehydrogenase-bound analogues of thiazole-4-carboxamide adenine dinucleotide (TAD), the active anabolite of the antitumor agent tiazofurin. Biochemistry, 33, 1994
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4XRE
| Crystal structure of Gnk2 complexed with mannose | 分子名称: | Antifungal protein ginkbilobin-2, alpha-D-mannopyranose | 著者 | Miyakawa, T, Hatano, K, Miyauchi, Y, Suwa, Y, Sawano, Y, Tanokura, M. | 登録日 | 2015-01-21 | 公開日 | 2015-02-25 | 最終更新日 | 2023-11-08 | 実験手法 | X-RAY DIFFRACTION (2.597 Å) | 主引用文献 | A secreted protein with plant-specific cysteine-rich motif functions as a mannose-binding lectin that exhibits antifungal activity. Plant Physiol., 166, 2014
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1ADG
| CRYSTALLOGRAPHIC STUDIES OF TWO ALCOHOL DEHYDROGENASE-BOUND ANALOGS OF THIAZOLE-4-CARBOXAMIDE ADENINE DINUCLEOTIDE (TAD), THE ACTIVE ANABOLITE OF THE ANTITUMOR AGENT TIAZOFURIN | 分子名称: | ALCOHOL DEHYDROGENASE, BETA-METHYLENE-SELENAZOLE-4-CARBOXYAMIDE-ADENINE DINUCLEOTIDE, ZINC ION | 著者 | Li, H, Hallows, W.A, Punzi, J.S, Marquez, V.E, Carrell, H.L, Pankiewicz, K.W, Watanabe, K.A, Goldstein, B.M. | 登録日 | 1993-10-18 | 公開日 | 1994-01-31 | 最終更新日 | 2024-02-07 | 実験手法 | X-RAY DIFFRACTION (2.7 Å) | 主引用文献 | Crystallographic studies of two alcohol dehydrogenase-bound analogues of thiazole-4-carboxamide adenine dinucleotide (TAD), the active anabolite of the antitumor agent tiazofurin. Biochemistry, 33, 1994
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1CKC
| T43A MUTANT HUMAN LYSOZYME | 分子名称: | PROTEIN (LYSOZYME), SODIUM ION | 著者 | Takano, K, Yamagata, Y, Funahashi, J, Yutani, K. | 登録日 | 1999-04-22 | 公開日 | 1999-04-30 | 最終更新日 | 2024-04-03 | 実験手法 | X-RAY DIFFRACTION (1.8 Å) | 主引用文献 | Contribution of intra- and intermolecular hydrogen bonds to the conformational stability of human lysozyme(,). Biochemistry, 38, 1999
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1CKG
| T52V MUTANT HUMAN LYSOZYME | 分子名称: | Lysozyme C | 著者 | Takano, K, Yamagata, Y, Funahashi, J, Yutani, K. | 登録日 | 1999-04-22 | 公開日 | 1999-05-05 | 最終更新日 | 2024-04-03 | 実験手法 | X-RAY DIFFRACTION (2.2 Å) | 主引用文献 | Contribution of intra- and intermolecular hydrogen bonds to the conformational stability of human lysozyme(,). Biochemistry, 38, 1999
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4V8X
| Structure of Thermus thermophilus ribosome | 分子名称: | 16S ribosomal RNA, 23S ribosomal RNA, 30S RIBOSOMAL PROTEIN S10, ... | 著者 | Feng, S, Chen, Y, Kamada, K, Wang, H, Tang, K, Wang, M, Gao, Y.G. | 登録日 | 2013-07-19 | 公開日 | 2014-07-09 | 最終更新日 | 2024-01-10 | 実験手法 | X-RAY DIFFRACTION (3.35 Å) | 主引用文献 | Yoeb-Ribosome Structure: A Canonical Rnase that Requires the Ribosome for its Specific Activity. Nucleic Acids Res., 41, 2013
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1AH1
| CTLA-4, NMR, 20 STRUCTURES | 分子名称: | CTLA-4, beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-[alpha-L-fucopyranose-(1-6)]2-acetamido-2-deoxy-beta-D-glucopyranose, beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-[beta-L-fucopyranose-(1-6)]2-acetamido-2-deoxy-beta-D-glucopyranose | 著者 | Metzler, W.J, Bajorath, J, Fenderson, W, Shaw, S.-Y, Peach, R, Constantine, K.L, Naemura, J, Leytze, G, Lavoie, T.B, Mueller, L, Linsley, P.S. | 登録日 | 1997-04-11 | 公開日 | 1998-04-15 | 最終更新日 | 2020-07-29 | 実験手法 | SOLUTION NMR | 主引用文献 | Solution structure of human CTLA-4 and delineation of a CD80/CD86 binding site conserved in CD28. Nat.Struct.Biol., 4, 1997
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8B69
| Heterotetramer of K-Ras4B(G12V) and Rgl2(RBD) | 分子名称: | Isoform 2B of GTPase KRas, MAGNESIUM ION, PHOSPHOAMINOPHOSPHONIC ACID-GUANYLATE ESTER, ... | 著者 | Tariq, M, Fairall, L, Romartinez-Alonso, B, Dominguez, C, Schwabe, J.W.R, Tanaka, K. | 登録日 | 2022-09-26 | 公開日 | 2023-08-23 | 最終更新日 | 2023-10-25 | 実験手法 | X-RAY DIFFRACTION (3.07 Å) | 主引用文献 | Structural insights into the complex of oncogenic KRas4B G12V and Rgl2, a RalA/B activator. Life Sci Alliance, 7, 2024
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2D1I
| Structure of human Atg4b | 分子名称: | Cysteine protease APG4B | 著者 | Kumanomidou, T, Mizushima, T, Komatsu, M, Suzuki, A, Tanida, I, Sou, Y.S, Ueno, T, Kominami, E, Tanaka, K, Yamane, T. | 登録日 | 2005-08-24 | 公開日 | 2006-01-10 | 最終更新日 | 2024-03-13 | 実験手法 | X-RAY DIFFRACTION (2 Å) | 主引用文献 | The Crystal Structure of Human Atg4b, a Processing and De-conjugating Enzyme for Autophagosome-forming Modifiers J.Mol.Biol., 355, 2006
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7YVW
| NMR determination of the 2:1 binding motif structure involving cytosine flipping out for the recognition of the CGG/CGG triad DNA | 分子名称: | 3-[3-[(7-methyl-1,8-naphthyridin-2-yl)carbamoyloxy]propylamino]propyl ~{N}-(7-methyl-1,8-naphthyridin-2-yl)carbamate, DNA (5'-D(*CP*AP*TP*TP*CP*GP*GP*TP*TP*AP*G)-3'), DNA (5'-D(*CP*TP*AP*AP*CP*GP*GP*AP*AP*TP*G)-3') | 著者 | Furuita, K, Yamada, T, Sakurabayashi, S, Nomura, M, Kojima, C, Nakatani, K. | 登録日 | 2022-08-19 | 公開日 | 2023-06-14 | 最終更新日 | 2024-05-15 | 実験手法 | SOLUTION NMR | 主引用文献 | NMR determination of the 2:1 binding complex of naphthyridine carbamate dimer (NCD) and CGG/CGG triad in double-stranded DNA. Nucleic Acids Res., 50, 2022
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3A1M
| A fusion protein of a beta helix region of gene product 5 and the foldon region of bacteriophage T4 | 分子名称: | POTASSIUM ION, chimera of thrombin cleavage site, Tail-associated lysozyme, ... | 著者 | Yokoi, N, Suzuki, A, Hikage, T, Koshiyama, T, Terauchi, M, Yutani, K, Kanamaru, S, Arisaka, F, Yamane, T, Watanabe, Y, Ueno, T. | 登録日 | 2009-04-11 | 公開日 | 2010-04-21 | 最終更新日 | 2023-11-01 | 実験手法 | X-RAY DIFFRACTION (2 Å) | 主引用文献 | Construction of Robust Bio-nanotubes using the Controlled Self-Assembly of Component Proteins of Bacteriophage T4 Small, 6, 2010
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8AU4
| Structural insights reveal a heterotetramer between oncogenic K-Ras4BG12V and Rgl2, a RalA/B activator | 分子名称: | Ral guanine nucleotide dissociation stimulator-like 2 | 著者 | Tariq, M, Ikeya, T, Togashi, N, Fairall, L, Alejo, C.B, Kamei, S, Alonso, B.R, Campillo, M.A.M, Hudson, A, Ito, Y, Schwabe, J, Dominguez, C, Tanaka, K. | 登録日 | 2022-08-25 | 公開日 | 2023-08-23 | 最終更新日 | 2023-10-25 | 実験手法 | SOLUTION NMR | 主引用文献 | Structural insights into the complex of oncogenic KRas4B G12V and Rgl2, a RalA/B activator. Life Sci Alliance, 7, 2024
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3A8Q
| Low-resolution crystal structure of the Tiam2 PHCCEx domain | 分子名称: | T-lymphoma invasion and metastasis-inducing protein 2 | 著者 | Terawaki, S, Kitano, K, Mori, T, Zhai, Y, Higuchi, Y, Itoh, N, Watanabe, T, Kaibuchi, K, Hakoshima, T. | 登録日 | 2009-10-07 | 公開日 | 2009-11-24 | 最終更新日 | 2024-03-13 | 実験手法 | X-RAY DIFFRACTION (3.2 Å) | 主引用文献 | The PHCCEx domain of Tiam1/2 is a novel protein- and membrane-binding module Embo J., 29, 2010
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3IXZ
| Pig gastric H+/K+-ATPase complexed with aluminium fluoride | 分子名称: | Potassium-transporting ATPase alpha, Potassium-transporting ATPase subunit beta | 著者 | Abe, K, Tani, K, Nishizawa, T, Fujiyoshi, Y. | 登録日 | 2009-03-09 | 公開日 | 2009-06-23 | 最終更新日 | 2024-02-21 | 実験手法 | ELECTRON CRYSTALLOGRAPHY (6.5 Å) | 主引用文献 | Inter-subunit interaction of gastric H+,K+-ATPase prevents reverse reaction of the transport cycle Embo J., 28, 2009
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3X3U
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3A8N
| Crystal structure of the Tiam1 PHCCEx domain | 分子名称: | T-lymphoma invasion and metastasis-inducing protein 1 | 著者 | Terawaki, S, Kitano, K, Mori, T, Zhai, Y, Higuchi, Y, Itoh, N, Watanabe, T, Kaibuchi, K, Hakoshima, T. | 登録日 | 2009-10-07 | 公開日 | 2009-11-24 | 最終更新日 | 2023-11-01 | 実験手法 | X-RAY DIFFRACTION (4.5 Å) | 主引用文献 | The PHCCEx domain of Tiam1/2 is a novel protein- and membrane-binding module Embo J., 29, 2010
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3AH6
| Remarkable improvement of the heat stability of CutA1 from E.coli by rational protein designing | 分子名称: | Divalent-cation tolerance protein cutA | 著者 | Matsuura, Y, Tanaka, T, Bagautdinov, B, Kunishima, N, Yutani, K. | 登録日 | 2010-04-15 | 公開日 | 2010-08-11 | 最終更新日 | 2023-11-01 | 実験手法 | X-RAY DIFFRACTION (2.4 Å) | 主引用文献 | Remarkable improvement in the heat stability of CutA1 from Escherichia coli by rational protein design J.Biochem., 148, 2010
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3A8P
| Crystal structure of the Tiam2 PHCCEx domain | 分子名称: | T-lymphoma invasion and metastasis-inducing protein 2 | 著者 | Terawaki, S, Kitano, K, Mori, T, Zhai, Y, Higuchi, Y, Itoh, N, Watanabe, T, Kaibuchi, K, Hakoshima, T. | 登録日 | 2009-10-07 | 公開日 | 2009-11-24 | 最終更新日 | 2023-11-01 | 実験手法 | X-RAY DIFFRACTION (2.1 Å) | 主引用文献 | The PHCCEx domain of Tiam1/2 is a novel protein- and membrane-binding module Embo J., 29, 2010
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1AVK
| CRYSTAL STRUCTURES OF THE COPPER-CONTAINING AMINE OXIDASE FROM ARTHROBACTER GLOBIFORMIS IN THE HOLO-AND APO-FORMS: IMPLICATIONS FOR THE BIOGENESIS OF TOPA QUINONE | 分子名称: | AMINE OXIDASE | 著者 | Wilce, M.C.J, Guss, J.M, Freeman, H.C, Tanizawa, K, Yamaguchi, H. | 登録日 | 1997-09-16 | 公開日 | 1998-03-18 | 最終更新日 | 2024-04-03 | 実験手法 | X-RAY DIFFRACTION (2.2 Å) | 主引用文献 | Crystal structures of the copper-containing amine oxidase from Arthrobacter globiformis in the holo and apo forms: implications for the biogenesis of topaquinone. Biochemistry, 36, 1997
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2ZWB
| Neutron crystal structure of wild type human lysozyme in D2O | 分子名称: | Lysozyme C | 著者 | Chiba-Kamoshida, K, Matsui, T, Chatake, T, Ohhara, T, Ostermann, A, Tanaka, I, Yutani, K, Niimura, N. | 登録日 | 2008-12-02 | 公開日 | 2009-12-08 | 最終更新日 | 2023-11-01 | 実験手法 | NEUTRON DIFFRACTION (1.8 Å) | 主引用文献 | Site-specific softening of peptide bonds by localized deuterium observed by neutron crystallography of human lysozyme To be Published
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3AA9
| Crystal Structure Analysis of the Mutant CutA1 (E61V) from E. coli | 分子名称: | Divalent-cation tolerance protein cutA | 著者 | Matsuura, Y, Tanaka, T, Bagautdinov, B, Kunishima, N, Yutani, K. | 登録日 | 2009-11-12 | 公開日 | 2010-08-11 | 最終更新日 | 2023-11-01 | 実験手法 | X-RAY DIFFRACTION (2.3 Å) | 主引用文献 | Remarkable improvement in the heat stability of CutA1 from Escherichia coli by rational protein design J.Biochem., 148, 2010
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3AA8
| Crystal Structure Analysis of the Mutant CutA1 (S11V/E61V) from E. coli | 分子名称: | Divalent-cation tolerance protein cutA | 著者 | Matsuura, Y, Tanaka, T, Bagautdinov, B, Kunishima, N, Yutani, K. | 登録日 | 2009-11-12 | 公開日 | 2010-08-11 | 最終更新日 | 2023-11-01 | 実験手法 | X-RAY DIFFRACTION (2.3 Å) | 主引用文献 | Remarkable improvement in the heat stability of CutA1 from Escherichia coli by rational protein design J.Biochem., 148, 2010
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2D1V
| Crystal structure of DNA-binding domain of Bacillus subtilis YycF | 分子名称: | Transcriptional regulatory protein yycF | 著者 | Okajima, T, Okada, A, Watanabe, T, Yamamoto, K, Tanizawa, K, Utsumi, R. | 登録日 | 2005-09-01 | 公開日 | 2006-09-12 | 最終更新日 | 2024-03-13 | 実験手法 | X-RAY DIFFRACTION (2.4 Å) | 主引用文献 | Response regulator YycF essential for bacterial growth: X-ray crystal structure of the DNA-binding domain and its PhoB-like DNA recognition motif Febs Lett., 582, 2008
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7YRK
| Crystal structure of the hen egg lysozyme-2-oxidobenzylidene-threoninato-copper (II) complex | 分子名称: | (6~{S})-6-[(1~{R})-1-oxidanylethyl]-2,4-dioxa-7$l^{4}-aza-3$l^{3}-cupratricyclo[7.4.0.0^{3,7}]trideca-1(13),7,9,11-tetraen-5-one, 1,2-ETHANEDIOL, CHLORIDE ION, ... | 著者 | Unno, M, Furuya, T, Kitanishi, K, Akitsu, T. | 登録日 | 2022-08-10 | 公開日 | 2023-05-10 | 最終更新日 | 2023-11-29 | 実験手法 | X-RAY DIFFRACTION (0.92 Å) | 主引用文献 | A novel hybrid protein composed of superoxide-dismutase-active Cu(II) complex and lysozyme. Sci Rep, 13, 2023
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