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PDB: 352 results

2SOD
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DETERMINATION AND ANALYSIS OF THE 2 ANGSTROM STRUCTURE OF COPPER, ZINC SUPEROXIDE DISMUTASE
Descriptor: COPPER (II) ION, COPPER,ZINC SUPEROXIDE DISMUTASE, ZINC ION
Authors:Tainer, J.A, Getzoff, E.D, Richardson, J.S, Richardson, D.C.
Deposit date:1980-03-25
Release date:1980-05-07
Last modified:2023-09-27
Method:X-RAY DIFFRACTION (2 Å)
Cite:Determination and analysis of the 2 A-structure of copper, zinc superoxide dismutase.
J.Mol.Biol., 160, 1982
1AKZ
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HUMAN URACIL-DNA GLYCOSYLASE
Descriptor: URACIL-DNA GLYCOSYLASE
Authors:Tainer, J.A, Mol, C.D.
Deposit date:1997-05-27
Release date:1997-08-20
Last modified:2024-02-07
Method:X-RAY DIFFRACTION (1.57 Å)
Cite:Base excision repair initiation revealed by crystal structures and binding kinetics of human uracil-DNA glycosylase with DNA.
Embo J., 17, 1998
8TLY
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Human ASCC1 Phosphodiesterase/Ligase Domain
Descriptor: Activating signal cointegrator 1 complex subunit 1
Authors:Tsutakawa, S.E, Tainer, J.A, Arvai, A.S, Thapar, R.
Deposit date:2023-07-27
Release date:2024-07-10
Method:X-RAY DIFFRACTION (2.8 Å)
Cite:ASCC1 structures and bioinformatics reveal a novel helix-clasp-helix RNA-binding motif linked to a two-histidine phosphodiesterase.
J.Biol.Chem., 300, 2024
8TUK
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Alvinella ASCC1 KH and Phosphodiesterase/Ligase Domain
Descriptor: 1,2-ETHANEDIOL, Activating signal cointegrator 1 complex subunit 1, IMIDAZOLE
Authors:Tsutakawa, S.E, Tainer, J.A, Arvai, A.S, Chinnam, N.B.
Deposit date:2023-08-16
Release date:2024-07-10
Method:X-RAY DIFFRACTION (1.15 Å)
Cite:ASCC1 structures and bioinformatics reveal a novel helix-clasp-helix RNA-binding motif linked to a two-histidine phosphodiesterase.
J.Biol.Chem., 300, 2024
3CRW
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XPD_APO
Descriptor: HEXACYANOFERRATE(3-), XPD/Rad3 related DNA helicase
Authors:Fan, L, Arvai, A.S, Tainer, J.A.
Deposit date:2008-04-07
Release date:2008-06-10
Last modified:2023-08-30
Method:X-RAY DIFFRACTION (4 Å)
Cite:XPD helicase structures and activities: insights into the cancer and aging phenotypes from XPD mutations.
Cell(Cambridge,Mass.), 133, 2008
3CRV
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XPD_Helicase
Descriptor: CITRATE ANION, GLYCEROL, IRON/SULFUR CLUSTER, ...
Authors:Fan, L, Arvai, A.S, Tainer, J.A.
Deposit date:2008-04-07
Release date:2008-06-10
Last modified:2024-02-21
Method:X-RAY DIFFRACTION (2 Å)
Cite:XPD helicase structures and activities: insights into the cancer and aging phenotypes from XPD mutations.
Cell(Cambridge,Mass.), 133, 2008
1EMH
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CRYSTAL STRUCTURE OF HUMAN URACIL-DNA GLYCOSYLASE BOUND TO UNCLEAVED SUBSTRATE-CONTAINING DNA
Descriptor: DNA (5'-D(*AP*AP*AP*GP*AP*TP*AP*AP*CP*A)-3'), DNA (5'-D(*TP*GP*TP*(P2U)P*AP*TP*CP*TP*T)-3'), URACIL-DNA GLYCOSYLASE
Authors:Parikh, S.S, Slupphaug, G, Krokan, H.E, Blackburn, G.M, Tainer, J.A.
Deposit date:2000-03-16
Release date:2000-05-16
Last modified:2024-02-07
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Uracil-DNA glycosylase-DNA substrate and product structures: conformational strain promotes catalytic efficiency by coupled stereoelectronic effects.
Proc.Natl.Acad.Sci.USA, 97, 2000
1EM1
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X-RAY CRYSTAL STRUCTURE FOR HUMAN MANGANESE SUPEROXIDE DISMUTASE, Q143A
Descriptor: MANGANESE (II) ION, MANGANESE SUPEROXIDE DISMUTASE, SULFATE ION
Authors:Leveque, V, Stroupe, M.E, Lepock, J.R, Cabelli, D.E, Tainer, J.A, Nick, H.S, Silverman, D.N.
Deposit date:2000-03-14
Release date:2000-03-24
Last modified:2024-02-07
Method:X-RAY DIFFRACTION (2.13 Å)
Cite:Multiple replacements of glutamine 143 in human manganese superoxide dismutase: effects on structure, stability, and catalysis.
Biochemistry, 39, 2000
1EMJ
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URACIL-DNA GLYCOSYLASE BOUND TO DNA CONTAINING A 4'-THIO-2'DEOXYURIDINE ANALOG PRODUCT
Descriptor: DNA (5'-D(*AP*AP*AP*GP*AP*TP*AP*AP*CP*A)-3'), DNA (5'-D(*TP*GP*TP*(ASU)P*AP*TP*CP*TP*T)-3'), URACIL, ...
Authors:Parikh, S.S, Walcher, G, Jones, G.D, Slupphaug, G, Krokan, H.E, Blackburn, G.M, Tainer, J.A.
Deposit date:2000-03-16
Release date:2000-05-16
Last modified:2024-02-07
Method:X-RAY DIFFRACTION (2 Å)
Cite:Uracil-DNA glycosylase-DNA substrate and product structures: conformational strain promotes catalytic efficiency by coupled stereoelectronic effects.
Proc.Natl.Acad.Sci.USA, 97, 2000
1N18
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Thermostable mutant of Human Superoxide Dismutase, C6A, C111S
Descriptor: COPPER (I) ION, SULFATE ION, Superoxide dismutase [Cu-Zn], ...
Authors:Cardoso, R.M.F, Thayer, M.M, DiDonato, M, Lo, T.P, Bruns, C.K, Getzoff, E.D, Tainer, J.A.
Deposit date:2002-10-16
Release date:2002-11-27
Last modified:2021-10-27
Method:X-RAY DIFFRACTION (2 Å)
Cite:Insights into Lou Gehrig's disease from the structure and instability of the A4V mutant of human Cu,Zn superoxide dismutase.
J.Mol.Biol., 324, 2002
1EH7
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METHYLATED HUMAN O6-ALKYLGUANINE-DNA ALKYLTRANSFERASE
Descriptor: O6-ALKYLGUANINE-DNA ALKYLTRANSFERASE, ZINC ION
Authors:Daniels, D.S, Tainer, J.A.
Deposit date:2000-02-18
Release date:2000-04-12
Last modified:2023-08-09
Method:X-RAY DIFFRACTION (2 Å)
Cite:Active and alkylated human AGT structures: a novel zinc site, inhibitor and extrahelical base binding.
EMBO J., 19, 2000
4P94
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The crystal structure of the soluble domain of Sulfolobus acidocaldarius FlaF (residues 35-164)
Descriptor: Conserved flagellar protein F, SODIUM ION
Authors:Tsai, C.-L, Arvai, A.S, Ishida, J.P, Tainer, J.A.
Deposit date:2014-04-02
Release date:2015-04-22
Last modified:2023-09-27
Method:X-RAY DIFFRACTION (1.651 Å)
Cite:FlaF Is a beta-Sandwich Protein that Anchors the Archaellum in the Archaeal Cell Envelope by Binding the S-Layer Protein.
Structure, 23, 2015
2G4C
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Crystal Structure of human DNA polymerase gamma accessory subunit
Descriptor: DNA polymerase gamma subunit 2
Authors:Fan, L, Farr, C.L, Kaguni, L.S, Tainer, J.A.
Deposit date:2006-02-22
Release date:2006-04-18
Last modified:2023-08-30
Method:X-RAY DIFFRACTION (3.15 Å)
Cite:A novel processive mechanism for DNA synthesis revealed by structure, modeling and mutagenesis of the accessory subunit of human mitochondrial DNA polymerase
J.Mol.Biol., 358, 2006
1N0N
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Catalytic and Structural Effects of Amino-Acid Substitution at His30 in Human Manganese Superoxide Dismutase
Descriptor: MANGANESE (II) ION, SULFATE ION, Superoxide dismutase [Mn]
Authors:Borgstahl, G.E.O, Parge, H.E, Hickey, M.J, Beyer Jr, W.F, Hallewell, R.A, Tainer, J.A.
Deposit date:2002-10-14
Release date:2002-11-06
Last modified:2024-02-14
Method:X-RAY DIFFRACTION (1.82 Å)
Cite:Catalytic and Structural Effects of Amino-Acid Substitution at His30 in Human Manganese Superoxide Dismutase
to be published
1MUY
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CATALYTIC DOMAIN OF MUTY FROM ESCHERICHIA COLI
Descriptor: ADENINE GLYCOSYLASE, GLYCEROL, IMIDAZOLE, ...
Authors:Guan, Y, Tainer, J.A.
Deposit date:1998-08-20
Release date:1999-08-20
Last modified:2024-02-14
Method:X-RAY DIFFRACTION (1.4 Å)
Cite:MutY catalytic core, mutant and bound adenine structures define specificity for DNA repair enzyme superfamily.
Nat.Struct.Biol., 5, 1998
1N19
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BU of 1n19 by Molmil
Structure of the HSOD A4V mutant
Descriptor: COPPER (I) ION, SULFATE ION, Superoxide Dismutase [Cu-Zn], ...
Authors:Cardoso, R.M.F, Thayer, M.M, DiDonato, M, Lo, T.P, Bruns, C.K, Getzoff, E.D, Tainer, J.A.
Deposit date:2002-10-16
Release date:2002-11-27
Last modified:2021-10-27
Method:X-RAY DIFFRACTION (1.86 Å)
Cite:Insights into Lou Gehrig's disease from the structure and instability of the A4V mutant of human Cu,Zn superoxide dismutase.
J.Mol.Biol., 324, 2002
1MUD
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BU of 1mud by Molmil
CATALYTIC DOMAIN OF MUTY FROM ESCHERICHIA COLI, D138N MUTANT COMPLEXED TO ADENINE
Descriptor: ADENINE, Adenine DNA glycosylase, GLYCEROL, ...
Authors:Guan, Y, Tainer, J.A.
Deposit date:1998-08-20
Release date:1999-09-20
Last modified:2024-04-03
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:MutY catalytic core, mutant and bound adenine structures define specificity for DNA repair enzyme superfamily.
Nat.Struct.Biol., 5, 1998
2FZ4
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Crystal Structure of the N-terminal half of Archaeoglobus Fulgidus XPB
Descriptor: DNA repair protein RAD25
Authors:Fan, L, Tainer, J.A.
Deposit date:2006-02-09
Release date:2006-04-18
Last modified:2024-02-14
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:Conserved XPB Core Structure and Motifs for DNA Unwinding: Implications for Pathway Selection of Transcription or Excision Repair.
Mol.Cell, 22, 2006
1N0J
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The Structure of Human Mitochondrial MN3+ Superoxide Dismutase Reveals a Novel Tetrameric Interface of Two 4-Helix Bundles
Descriptor: MANGANESE (II) ION, Superoxide dismutase [Mn]
Authors:Borgstahl, G.E.O, Parge, H.E, Tainer, J.A.
Deposit date:2002-10-14
Release date:2002-11-06
Last modified:2024-02-14
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:The Structure of Human Mitochondrial Mn3+ Superoxide Dismutase Reveals a Novel Tetrameric Interface of Two 4-Helix Bundles
Cell(Cambridge,Mass.), 71, 1992
2G5Z
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Structure of S65G Y66S GFP variant after spontaneous peptide hydrolysis and decarboxylation
Descriptor: Green fluorescent protein, MAGNESIUM ION
Authors:Barondeau, D.P, Kassmann, C.J, Tainer, J.A, Getzoff, E.D.
Deposit date:2006-02-23
Release date:2006-04-18
Last modified:2023-08-30
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Understanding GFP Posttranslational Chemistry: Structures of Designed Variants that Achieve Backbone Fragmentation, Hydrolysis, and Decarboxylation.
J.Am.Chem.Soc., 128, 2006
4PPE
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human RNF4 RING domain
Descriptor: E3 ubiquitin-protein ligase RNF4, ZINC ION
Authors:Perry, J.J, Arvai, A.S, Hitomi, C, Tainer, J.A.
Deposit date:2014-02-26
Release date:2014-03-26
Last modified:2024-02-28
Method:X-RAY DIFFRACTION (2 Å)
Cite:RNF4 interacts with both SUMO and nucleosomes to promote the DNA damage response.
Embo Rep., 15, 2014
8GJ9
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RAD51C N-terminal domain
Descriptor: RAD51C, ZINC ION
Authors:Arvai, A.S, Tainer, J.A, Williams, G.
Deposit date:2023-03-15
Release date:2023-08-16
Method:X-RAY DIFFRACTION (1.6 Å)
Cite:RAD51C-XRCC3 structure and cancer patient mutations define DNA replication roles.
Nat Commun, 14, 2023
8GJA
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RAD51C-XRCC3 structure
Descriptor: ADENOSINE-5'-DIPHOSPHATE, BERYLLIUM TRIFLUORIDE ION, RAD51C, ...
Authors:Arvai, A.S, Tainer, J.A, Williams, G, Longo, M.A.
Deposit date:2023-03-15
Release date:2023-08-16
Last modified:2023-10-18
Method:X-RAY DIFFRACTION (2.6 Å)
Cite:RAD51C-XRCC3 structure and cancer patient mutations define DNA replication roles.
Nat Commun, 14, 2023
8GJ8
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RAD51C C-terminal domain
Descriptor: ADENOSINE-5'-DIPHOSPHATE, MAGNESIUM ION, RAD51C
Authors:Arvai, A.S, Tainer, J.A, Williams, G.
Deposit date:2023-03-15
Release date:2023-08-16
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:RAD51C-XRCC3 structure and cancer patient mutations define DNA replication roles.
Nat Commun, 14, 2023
7N8W
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Crystal structure of ERI2 nuclease bound to rAMP
Descriptor: 1,2-ETHANEDIOL, ADENOSINE MONOPHOSPHATE, ERI1 exoribonuclease 2, ...
Authors:Thapar, R, Arvai, A.S, Tainer, J.A.
Deposit date:2021-06-15
Release date:2022-07-06
Last modified:2023-10-18
Method:X-RAY DIFFRACTION (2.35 Å)
Cite:Crystal structure of ERI2 nuclease bound to rAMP
To Be Published

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PDB entries from 2024-07-17

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