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PDB: 290 results

1AVS
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BU of 1avs by Molmil
X-RAY CRYSTALLOGRAPHIC STUDY OF CALCIUM-SATURATED N-TERMINAL DOMAIN OF TROPONIN C
Descriptor: CALCIUM ION, TROPONIN C
Authors:Strynadka, N.C.J, James, M.N.G.
Deposit date:1997-09-19
Release date:1997-12-24
Last modified:2024-05-22
Method:X-RAY DIFFRACTION (1.75 Å)
Cite:Structural details of a calcium-induced molecular switch: X-ray crystallographic analysis of the calcium-saturated N-terminal domain of troponin C at 1.75 A resolution.
J.Mol.Biol., 273, 1997
6BS9
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BU of 6bs9 by Molmil
Stage III sporulation protein AB (SpoIIIAB)
Descriptor: SULFATE ION, Stage III sporulation protein AB
Authors:Strynadka, N.C.J, Zeytuni, N, Camp, A.H, Flanagan, K.A.
Deposit date:2017-12-01
Release date:2018-01-17
Last modified:2024-03-13
Method:X-RAY DIFFRACTION (2.32 Å)
Cite:Structural characterization of SpoIIIAB sporulation-essential protein in Bacillus subtilis.
J. Struct. Biol., 202, 2018
6DCS
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BU of 6dcs by Molmil
Stage III sporulation protein AF (SpoIIIAF)
Descriptor: SULFATE ION, Stage III sporulation protein AF
Authors:Strynadka, N.C.J, Zeytuni, N, Camp, A.H, Flanagan, K.A.
Deposit date:2018-05-08
Release date:2018-07-18
Last modified:2024-03-13
Method:X-RAY DIFFRACTION (2.7 Å)
Cite:Structural and biochemical characterization of SpoIIIAF, a component of a sporulation-essential channel in Bacillus subtilis.
J. Struct. Biol., 204, 2018
3SPU
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BU of 3spu by Molmil
apo NDM-1 Crystal Structure
Descriptor: Beta-lactamase NDM-1, ZINC ION
Authors:Strynadka, N.C.J, King, D.T.
Deposit date:2011-07-03
Release date:2011-08-03
Last modified:2023-09-13
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Crystal structure of New Delhi metallo-beta-lactamase reveals molecular basis for antibiotic resistance
Protein Sci., 20, 2011
4EYB
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BU of 4eyb by Molmil
Crystal structure of NDM-1 bound to hydrolyzed oxacillin
Descriptor: (2R,4S)-2-[(R)-carboxy{[(5-methyl-3-phenyl-1,2-oxazol-4-yl)carbonyl]amino}methyl]-5,5-dimethyl-1,3-thiazolidine-4-carbo xylic acid, Beta-lactamase NDM-1, ZINC ION
Authors:Strynadka, N.C.J, King, D.T.
Deposit date:2012-05-01
Release date:2012-08-15
Last modified:2024-02-28
Method:X-RAY DIFFRACTION (1.16 Å)
Cite:New Delhi Metallo-Beta-Lactamase: Structural Insights into Beta-Lactam Recognition and Inhibition
J.Am.Chem.Soc., 134, 2012
4EY2
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BU of 4ey2 by Molmil
Crystal structure of NDM-1 bound to hydrolyzed methicillin
Descriptor: (2R,4S)-2-{(R)-carboxy[(2,6-dimethoxybenzoyl)amino]methyl}-5,5-dimethyl-1,3-thiazolidine-4-carboxylic acid, Beta-lactamase NDM-1, ZINC ION
Authors:Strynadka, N.C.J, King, D.T.
Deposit date:2012-05-01
Release date:2012-08-08
Last modified:2024-02-28
Method:X-RAY DIFFRACTION (1.17 Å)
Cite:New Delhi Metallo-Beta-Lactamase: Structural Insights into Beta-Lactam Recognition and Inhibition
J.Am.Chem.Soc., 134, 2012
4EYF
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BU of 4eyf by Molmil
Crystal structure of NDM-1 bound to hydrolyzed benzylpenicillin
Descriptor: (2R,4S)-2-{(R)-carboxy[(phenylacetyl)amino]methyl}-5,5-dimethyl-1,3-thiazolidine-4-carboxylic acid, Beta-lactamase NDM-1, ZINC ION
Authors:Strynadka, N.C.J, King, D.T.
Deposit date:2012-05-01
Release date:2012-08-08
Last modified:2024-02-28
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:New Delhi Metallo-Beta-Lactamase: Structural Insights into Beta-Lactam Recognition and Inhibition
J.Am.Chem.Soc., 134, 2012
4EXY
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BU of 4exy by Molmil
Crystal structure of NDM-1 bound to ethylene glycol
Descriptor: 1,2-ETHANEDIOL, Beta-lactamase NDM-1, ZINC ION
Authors:Strynadka, N.C.J, King, D.T.
Deposit date:2012-05-01
Release date:2012-08-08
Last modified:2024-02-28
Method:X-RAY DIFFRACTION (1.47 Å)
Cite:New Delhi Metallo-Beta-Lactamase: Structural Insights into Beta-Lactam Recognition and Inhibition
J.Am.Chem.Soc., 134, 2012
4EXS
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BU of 4exs by Molmil
Crystal structure of NDM-1 bound to L-captopril
Descriptor: Beta-lactamase NDM-1, L-CAPTOPRIL, ZINC ION
Authors:Strynadka, N.C.J, King, D.T.
Deposit date:2012-04-30
Release date:2012-08-08
Last modified:2023-09-13
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:New Delhi Metallo-Beta-Lactamase: Structural Insights into Beta-Lactam Recognition and Inhibition
J.Am.Chem.Soc., 134, 2012
4EYL
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BU of 4eyl by Molmil
Crystal structure of NDM-1 bound to hydrolyzed meropenem
Descriptor: (2S)-2-[(1S,2R)-1-carboxy-2-hydroxypropyl]-4-{[(3S,5S)-5-(dimethylcarbamoyl)pyrrolidin-3-yl]sulfanyl}-3-methyl-2H-pyrro le-5-carboxylic acid, Beta-lactamase NDM-1, ZINC ION
Authors:Strynadka, N.C.J, King, D.T.
Deposit date:2012-05-01
Release date:2012-08-08
Last modified:2024-02-28
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:New Delhi Metallo-Beta-Lactamase: Structural Insights into Beta-Lactam Recognition and Inhibition
J.Am.Chem.Soc., 134, 2012
1JTG
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BU of 1jtg by Molmil
CRYSTAL STRUCTURE OF TEM-1 BETA-LACTAMASE / BETA-LACTAMASE INHIBITOR PROTEIN COMPLEX
Descriptor: BETA-LACTAMASE INHIBITORY PROTEIN, BETA-LACTAMASE TEM, CALCIUM ION
Authors:Strynadka, N.C.J, Jensen, S.E, Alzari, P.M, James, M.N.
Deposit date:2001-08-20
Release date:2001-10-17
Last modified:2024-04-03
Method:X-RAY DIFFRACTION (1.73 Å)
Cite:Crystal structure and kinetic analysis of beta-lactamase inhibitor protein-II in complex with TEM-1 beta-lactamase.
Nat.Struct.Biol., 8, 2001
1PPK
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BU of 1ppk by Molmil
CRYSTALLOGRAPHIC ANALYSIS OF TRANSITION STATE MIMICS BOUND TO PENICILLOPEPSIN: PHOSPHOROUS-CONTAINING PEPTIDE ANALOGUES
Descriptor: DIMETHYLFORMAMIDE, N-(3-methylbutanoyl)-L-valyl-N-{(1R)-1-[(R)-(2-ethoxy-2-oxoethyl)(hydroxy)phosphoryl]-3-methylbutyl}-L-valinamide, PENICILLOPEPSIN, ...
Authors:Strynadka, N.C.J, James, M.N.G.
Deposit date:1994-01-20
Release date:1994-05-31
Last modified:2020-07-29
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Crystallographic analysis of transition-state mimics bound to penicillopepsin: phosphorus-containing peptide analogues.
Biochemistry, 31, 1992
3L7J
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BU of 3l7j by Molmil
Structure of the Wall Teichoic Acid Polymerase TagF, H444N variant
Descriptor: CHLORIDE ION, SULFATE ION, Teichoic acid biosynthesis protein F
Authors:Strynadka, N.C.J, Lovering, A.L.
Deposit date:2009-12-28
Release date:2010-04-28
Last modified:2023-09-06
Method:X-RAY DIFFRACTION (2.81 Å)
Cite:Structure of the bacterial teichoic acid polymerase TagF provides insights into membrane association and catalysis.
Nat.Struct.Mol.Biol., 17, 2010
3L7K
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BU of 3l7k by Molmil
Structure of the Wall Teichoic Acid Polymerase TagF, H444N + CDPG (15 minute soak)
Descriptor: 1,2-ETHANEDIOL, CHLORIDE ION, SULFATE ION, ...
Authors:Strynadka, N.C.J, Lovering, A.L.
Deposit date:2009-12-28
Release date:2010-04-28
Last modified:2023-09-06
Method:X-RAY DIFFRACTION (3.1 Å)
Cite:Structure of the bacterial teichoic acid polymerase TagF provides insights into membrane association and catalysis.
Nat.Struct.Mol.Biol., 17, 2010
3L7I
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BU of 3l7i by Molmil
Structure of the Wall Teichoic Acid Polymerase TagF
Descriptor: 1,2-ETHANEDIOL, CHLORIDE ION, SULFATE ION, ...
Authors:Strynadka, N.C.J, Lovering, A.L.
Deposit date:2009-12-28
Release date:2010-04-28
Last modified:2024-02-21
Method:X-RAY DIFFRACTION (2.7 Å)
Cite:Structure of the bacterial teichoic acid polymerase TagF provides insights into membrane association and catalysis.
Nat.Struct.Mol.Biol., 17, 2010
3GMU
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BU of 3gmu by Molmil
Crystal Structure of Beta-Lactamse Inhibitory Protein (BLIP) in Apo Form
Descriptor: AMMONIUM ION, Beta-lactamase inhibitory protein, SULFATE ION
Authors:Strynadka, N.C.J, Gretes, M, James, M.N.G.
Deposit date:2009-03-15
Release date:2009-03-31
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.98 Å)
Cite:Insights into positive and negative requirements for protein-protein interactions by crystallographic analysis of the beta-lactamase inhibitory proteins BLIP, BLIP-I, and BLP.
J.Mol.Biol., 389, 2009
8SXR
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BU of 8sxr by Molmil
Crystal structure of SARS-CoV-2 Mpro with C5a
Descriptor: 3C-like proteinase nsp5, N-[(4-chlorothiophen-2-yl)methyl]-N-[4-(dimethylamino)phenyl]-2-(5-hydroxyisoquinolin-4-yl)acetamide
Authors:Worrall, L.J, Kenward, C, Lee, J, Strynadka, N.C.J.
Deposit date:2023-05-23
Release date:2023-08-30
Method:X-RAY DIFFRACTION (2.114 Å)
Cite:A novel class of broad-spectrum active-site-directed 3C-like protease inhibitors with nanomolar antiviral activity against highly immune-evasive SARS-CoV-2 Omicron subvariants.
Emerg Microbes Infect, 12, 2023
8FFJ
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BU of 8ffj by Molmil
Structure of Zanidatamab bound to HER2
Descriptor: Receptor tyrosine-protein kinase erbB-2, Zanidatamab Heavy Chain A, Zanidatamab Heavy Chain B, ...
Authors:Worrall, L.J, Atkinson, C.E, Sanches, M, Dixit, S, Strynadka, N.C.J.
Deposit date:2022-12-08
Release date:2023-02-22
Method:ELECTRON MICROSCOPY (7.5 Å)
Cite:Zanidatamab, an Anti-HER2 Biparatopic that Induces Unique Surface HER2 Clusters and Complement-Dependent Cytotoxicity
To be Published
6ZTG
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BU of 6ztg by Molmil
Spor protein DedD
Descriptor: Cell division protein DedD
Authors:Pazos, M, Peters, K, Boes, A, Safaei, Y, Kenward, C, Caveney, N.A, Laguri, C, Breukink, E, Strynadka, N.C.J, Simorre, J.P, Terrak, M, Vollmer, W.
Deposit date:2020-07-20
Release date:2020-11-11
Last modified:2023-06-14
Method:SOLUTION NMR
Cite:SPOR Proteins Are Required for Functionality of Class A Penicillin-Binding Proteins in Escherichia coli.
Mbio, 11, 2020
7UZ2
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BU of 7uz2 by Molmil
Structure of beta-glycosidase from Sulfolobus solfataricus in complex with C5a-fluoro-valienide.
Descriptor: (1R,2S,3R,4R)-5-fluoro-6-(hydroxymethyl)cyclohex-5-ene-1,2,3,4-tetrol, Beta-galactosidase
Authors:Danby, P.M, Jeong, A, Sim, L, Sweeney, R.P, Wardman, J.F, Geissner, A, Worrall, L.J, Strynadka, N.C.J, Withers, S.G.
Deposit date:2022-05-08
Release date:2023-04-05
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (1.83 Å)
Cite:Vinyl Halide-Modified Unsaturated Cyclitols are Mechanism-Based Glycosidase Inhibitors.
Angew.Chem.Int.Ed.Engl., 62, 2023
7UZ1
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BU of 7uz1 by Molmil
Structure of beta-glycosidase from Sulfolobus solfataricus in complex with C5a-bromo-valienide.
Descriptor: (1R,2S,3R,4R)-5-bromo-6-(hydroxymethyl)cyclohex-5-ene-1,2,3,4-tetrol, 1,2-ETHANEDIOL, Beta-galactosidase
Authors:Danby, P.M, Jeong, A, Sim, L, Sweeney, R.P, Wardman, J.F, Karimi, R, Geissner, A, Worrall, L.J, Strynadka, N.C.J, Withers, S.G.
Deposit date:2022-05-08
Release date:2023-04-05
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (1.58 Å)
Cite:Vinyl Halide-Modified Unsaturated Cyclitols are Mechanism-Based Glycosidase Inhibitors.
Angew.Chem.Int.Ed.Engl., 62, 2023
7TC6
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BU of 7tc6 by Molmil
All Phe-Azurin variant - F15W
Descriptor: Azurin, COPPER (II) ION, NITRATE ION
Authors:Fedoretz-Maxwell, B.P, Worrall, L.J, Strynadka, N.C.J, Warren, J.J.
Deposit date:2021-12-22
Release date:2022-06-22
Last modified:2023-10-18
Method:X-RAY DIFFRACTION (1.85 Å)
Cite:The Impact of Second Coordination Sphere Methionine-Aromatic Interactions in Copper Proteins.
Inorg.Chem., 61, 2022
7TC5
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BU of 7tc5 by Molmil
All Phe-Azurin variant - F15Y
Descriptor: Azurin, COPPER (II) ION, NITRATE ION, ...
Authors:Fedoretz-Maxwell, B.P, Worrall, L.J, Strynadka, N.C.J, Warren, J.J.
Deposit date:2021-12-22
Release date:2022-06-22
Last modified:2023-10-18
Method:X-RAY DIFFRACTION (1.45 Å)
Cite:The Impact of Second Coordination Sphere Methionine-Aromatic Interactions in Copper Proteins.
Inorg.Chem., 61, 2022
2DRJ
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BU of 2drj by Molmil
Xray structure of alpha-2,3/8-sialyltransferase CstII F91Y mutant
Descriptor: Alpha-2,3/8-sialyltransferase, CYTIDINE-5'-MONOPHOSPHATE-3-FLUORO-N-ACETYL-NEURAMINIC ACID, ISOPROPYL ALCOHOL
Authors:Chiu, C.P.C, Strynadka, N.C.J.
Deposit date:2006-06-09
Release date:2007-04-24
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (2.25 Å)
Cite:High-throughput screening methodology for the directed evolution of glycosyltransferases
Nat.Methods, 3, 2006
2F2H
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BU of 2f2h by Molmil
Structure of the YicI thiosugar Michaelis complex
Descriptor: 3[N-MORPHOLINO]PROPANE SULFONIC ACID, 4-NITROPHENYL 6-THIO-6-S-ALPHA-D-XYLOPYRANOSYL-BETA-D-GLUCOPYRANOSIDE, GLYCEROL, ...
Authors:Kim, Y.-W, Lovering, A.L, Strynadka, N.C.J, Withers, S.G.
Deposit date:2005-11-16
Release date:2006-02-28
Last modified:2023-08-23
Method:X-RAY DIFFRACTION (1.95 Å)
Cite:Expanding the Thioglycoligase Strategy to the Synthesis of alpha-linked Thioglycosides Allows Structural Investigation of the Parent Enzyme/Substrate Complex
J.Am.Chem.Soc., 128, 2006

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