4URL
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![BU of 4url by Molmil](/molmil-images/mine/4url) | Crystal Structure of Staph ParE43kDa in complex with KBD | 分子名称: | (1R,4aS,5S,6S,8aR)-5-{[(5S)-1-(3-O-acetyl-4-O-carbamoyl-6-deoxy-2-O-methyl-alpha-L-talopyranosyl)-4-hydroxy-2-oxo-5-(propan-2-yl)-2,5-dihydro-1H-pyrrol-3-yl]carbonyl}-6-methyl-4-methylidene-1,2,3,4,4a,5,6,8a-octahydronaphthalen-1-yl 2,6-dideoxy-3-C-[(1S)-1-{[(3,4-dichloro-5-methyl-1H-pyrrol-2-yl)carbonyl]amino}ethyl]-beta-D-ribo-hexopyranoside, DNA TOPOISOMERASE IV, B SUBUNIT | 著者 | Lu, J, Patel, S, Sharma, N, Soisson, S, Kishii, R, Takei, M, Fukuda, Y, Lumb, K.J, Singh, S.B. | 登録日 | 2014-06-30 | 公開日 | 2014-07-16 | 最終更新日 | 2024-01-10 | 実験手法 | X-RAY DIFFRACTION (2.29 Å) | 主引用文献 | Structures of Kibdelomycin Bound to Staphylococcus Aureus Gyrb and Pare Showed a Novel U-Shaped Binding Mode. Acs Chem.Biol., 9, 2014
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4URN
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![BU of 4urn by Molmil](/molmil-images/mine/4urn) | Crystal Structure of Staph ParE 24kDa in complex with Novobiocin | 分子名称: | DNA TOPOISOMERASE IV, B SUBUNIT, NOVOBIOCIN | 著者 | Lu, J, Patel, S, Sharma, N, Soisson, S, Kishii, R, Takei, M, Fukuda, Y, Lumb, K.J, Singh, S.B. | 登録日 | 2014-07-01 | 公開日 | 2014-07-16 | 最終更新日 | 2024-01-10 | 実験手法 | X-RAY DIFFRACTION (2.3 Å) | 主引用文献 | Structures of Kibdelomycin Bound to Staphylococcus Aureus Gyrb and Pare Showed a Novel U-Shaped Binding Mode. Acs Chem.Biol., 9, 2014
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4U9L
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![BU of 4u9l by Molmil](/molmil-images/mine/4u9l) | Structure of a membrane protein | 分子名称: | (2R)-2,3-dihydroxypropyl (9Z)-octadec-9-enoate, MAGNESIUM ION, Magnesium transporter MgtE | 著者 | Takeda, H, Hattori, M, Nishizawa, T, Yamashita, K, Shah, S.T.A, Caffrey, M, Maturana, A.D, Ishitani, R, Nureki, O. | 登録日 | 2014-08-06 | 公開日 | 2014-12-03 | 最終更新日 | 2024-03-20 | 実験手法 | X-RAY DIFFRACTION (2.3 Å) | 主引用文献 | Structural basis for ion selectivity revealed by high-resolution crystal structure of Mg(2+) channel MgtE Nat Commun, 5, 2014
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4U9N
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![BU of 4u9n by Molmil](/molmil-images/mine/4u9n) | Structure of a membrane protein | 分子名称: | (2R)-2,3-dihydroxypropyl (9Z)-octadec-9-enoate, MANGANESE (II) ION, Magnesium transporter MgtE, ... | 著者 | Takeda, H, Hattori, M, Nishizawa, T, Yamashita, K, Shah, S.T.A, Caffrey, M, Maturana, A.D, Ishitani, R, Nureki, O. | 登録日 | 2014-08-06 | 公開日 | 2014-12-03 | 最終更新日 | 2024-03-20 | 実験手法 | X-RAY DIFFRACTION (2.2 Å) | 主引用文献 | Structural basis for ion selectivity revealed by high-resolution crystal structure of Mg(2+) channel MgtE Nat Commun, 5, 2014
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8JHK
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![BU of 8jhk by Molmil](/molmil-images/mine/8jhk) | Cryo-EM structure of the DOCK5/ELMO1 complex, focused on one protomer | 分子名称: | Dedicator of cytokinesis protein 5, Engulfment and cell motility protein 1 | 著者 | Kukimoto-Niino, M, Katsura, K, Ishizuka-Katsura, Y, Mishima-Tsumagari, C, Yonemochi, M, Inoue, M, Nakagawa, R, Kaushik, R, Zhang, K.Y.J, Shirouzu, M. | 登録日 | 2023-05-23 | 公開日 | 2024-05-29 | 最終更新日 | 2024-07-17 | 実験手法 | ELECTRON MICROSCOPY (4.76 Å) | 主引用文献 | RhoG facilitates a conformational transition in the guanine nucleotide exchange factor complex DOCK5/ELMO1 to an open state. J.Biol.Chem., 300, 2024
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1UFA
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![BU of 1ufa by Molmil](/molmil-images/mine/1ufa) | Crystal structure of TT1467 from Thermus thermophilus HB8 | 分子名称: | TT1467 protein | 著者 | Idaka, M, Terada, T, Murayama, K, Yamaguchi, H, Nureki, O, Ishitani, R, Kuramitsu, S, Shirouzu, M, Yokoyama, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI) | 登録日 | 2003-05-28 | 公開日 | 2003-11-28 | 最終更新日 | 2023-12-27 | 実験手法 | X-RAY DIFFRACTION (2.2 Å) | 主引用文献 | Crystal structure of TT1467 from Thermus thermophilus HB8 To be published
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1V6Q
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![BU of 1v6q by Molmil](/molmil-images/mine/1v6q) | Crystal Structures of Collagen Model Peptides with Pro-Hyp-Gly Sequence at 1.3 A | 分子名称: | Collagen like peptide | 著者 | Okuyama, K, Hongo, C, Fukushima, R, Wu, G, Narita, H, Noguchi, K, Tanaka, Y, Nishino, N. | 登録日 | 2003-12-03 | 公開日 | 2004-08-03 | 最終更新日 | 2024-04-03 | 実験手法 | X-RAY DIFFRACTION (1.25 Å) | 主引用文献 | Crystal structures of collagen model peptides with Pro-Hyp-Gly repeating sequence at 1.26 A resolution: implications for proline ring puckering Biopolymers, 76, 2004
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6LNG
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![BU of 6lng by Molmil](/molmil-images/mine/6lng) | Rapid crystallization of streptavidin using charged peptides | 分子名称: | GLYCEROL, Streptavidin | 著者 | Minamihata, K, Tsukamoto, K, Adachi, M, Shimizu, R, Mishina, M, Kuroki, R, Nagamune, T. | 登録日 | 2019-12-30 | 公開日 | 2020-03-18 | 最終更新日 | 2023-11-22 | 実験手法 | X-RAY DIFFRACTION (1.8000015 Å) | 主引用文献 | Genetically fused charged peptides induce rapid crystallization of proteins. Chem.Commun.(Camb.), 56, 2020
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5B1O
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![BU of 5b1o by Molmil](/molmil-images/mine/5b1o) | DHp domain structure of EnvZ P248A mutant | 分子名称: | Osmolarity sensor protein EnvZ | 著者 | Okajima, T, Eguchi, Y, Tochio, N, Inukai, Y, Shimizu, R, Ueda, S, Shinya, S, Kigawa, T, Fukamizo, T, Igarashi, M, Utsumi, R. | 登録日 | 2015-12-09 | 公開日 | 2016-12-14 | 最終更新日 | 2023-11-08 | 実験手法 | X-RAY DIFFRACTION (2.3 Å) | 主引用文献 | Angucycline antibiotic waldiomycin recognizes common structural motif conserved in bacterial histidine kinases J. Antibiot., 70, 2017
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5B1N
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![BU of 5b1n by Molmil](/molmil-images/mine/5b1n) | DHp domain structure of EnvZ from Escherichia coli | 分子名称: | Osmolarity sensor protein EnvZ | 著者 | Okajima, T, Eguchi, Y, Tochio, N, Inukai, Y, Shimizu, R, Ueda, S, Shinya, S, Kigawa, T, Fukamizo, T, Igarashi, M, Utsumi, R. | 登録日 | 2015-12-09 | 公開日 | 2016-12-14 | 最終更新日 | 2023-11-08 | 実験手法 | X-RAY DIFFRACTION (1.33 Å) | 主引用文献 | Angucycline antibiotic waldiomycin recognizes common structural motif conserved in bacterial histidine kinases J. Antibiot., 70, 2017
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1ULH
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![BU of 1ulh by Molmil](/molmil-images/mine/1ulh) | A short peptide insertion crucial for angiostatic activity of human tryptophanyl-tRNA synthetase | 分子名称: | Tryptophanyl-tRNA synthetase | 著者 | Kise, Y, Sengoku, T, Ishii, R, Yokoyama, S, Park, S.G, Lee, S.W, Kim, S, Nureki, O, RIKEN Structural Genomics/Proteomics Initiative (RSGI) | 登録日 | 2003-09-12 | 公開日 | 2004-02-03 | 最終更新日 | 2023-12-27 | 実験手法 | X-RAY DIFFRACTION (2.31 Å) | 主引用文献 | A short peptide insertion crucial for angiostatic activity of human tryptophanyl-tRNA synthetase Nat.Struct.Mol.Biol., 11, 2004
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4XJ6
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![BU of 4xj6 by Molmil](/molmil-images/mine/4xj6) | Crystal structure of Escherichia coli DncV 3'-deoxy GTP bound form | 分子名称: | 3'-DEOXY-GUANOSINE-5'-TRIPHOSPHATE, MAGNESIUM ION, VC0179-like protein | 著者 | Kato, K, Ishii, R, Ishitani, R, Nureki, O. | 登録日 | 2015-01-08 | 公開日 | 2015-04-29 | 最終更新日 | 2024-03-20 | 実験手法 | X-RAY DIFFRACTION (2.31 Å) | 主引用文献 | Structural Basis for the Catalytic Mechanism of DncV, Bacterial Homolog of Cyclic GMP-AMP Synthase Structure, 23, 2015
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4XJ3
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![BU of 4xj3 by Molmil](/molmil-images/mine/4xj3) | Crystal structure of Vibrio cholerae DncV GTP bound form | 分子名称: | 1,2-ETHANEDIOL, Cyclic AMP-GMP synthase, GUANOSINE-5'-TRIPHOSPHATE, ... | 著者 | Kato, K, Ishii, R, Ishitani, R, Nureki, O. | 登録日 | 2015-01-08 | 公開日 | 2015-04-29 | 最終更新日 | 2023-11-08 | 実験手法 | X-RAY DIFFRACTION (1.65 Å) | 主引用文献 | Structural Basis for the Catalytic Mechanism of DncV, Bacterial Homolog of Cyclic GMP-AMP Synthase Structure, 23, 2015
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1V2X
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![BU of 1v2x by Molmil](/molmil-images/mine/1v2x) | TrmH | 分子名称: | PHOSPHATE ION, S-ADENOSYLMETHIONINE, tRNA (Gm18) methyltransferase | 著者 | Nureki, O, Watanabe, K, Fukai, S, Ishii, R, Endo, Y, Hori, H, Yokoyama, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI) | 登録日 | 2003-10-17 | 公開日 | 2004-05-04 | 最終更新日 | 2023-12-27 | 実験手法 | X-RAY DIFFRACTION (1.5 Å) | 主引用文献 | Deep Knot Structure for Construction of Active Site and Cofactor Binding Site of tRNA Modification Enzyme STRUCTURE, 12, 2004
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4XJ1
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![BU of 4xj1 by Molmil](/molmil-images/mine/4xj1) | Crystal structure of Vibrio cholerae DncV apo form | 分子名称: | 1,2-ETHANEDIOL, Cyclic AMP-GMP synthase | 著者 | Kato, K, Ishii, R, Ishitani, R, Nureki, O. | 登録日 | 2015-01-08 | 公開日 | 2015-04-29 | 最終更新日 | 2020-02-05 | 実験手法 | X-RAY DIFFRACTION (1.77 Å) | 主引用文献 | Structural Basis for the Catalytic Mechanism of DncV, Bacterial Homolog of Cyclic GMP-AMP Synthase Structure, 23, 2015
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4XJ4
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![BU of 4xj4 by Molmil](/molmil-images/mine/4xj4) | Crystal structure of Vibrio cholerae DncV 3'-deoxy ATP bound form | 分子名称: | 1,2-ETHANEDIOL, 3'-DEOXYADENOSINE-5'-TRIPHOSPHATE, Cyclic AMP-GMP synthase, ... | 著者 | Kato, K, Ishii, R, Ishitani, R, Nureki, O. | 登録日 | 2015-01-08 | 公開日 | 2015-04-29 | 最終更新日 | 2023-11-08 | 実験手法 | X-RAY DIFFRACTION (1.596 Å) | 主引用文献 | Structural Basis for the Catalytic Mechanism of DncV, Bacterial Homolog of Cyclic GMP-AMP Synthase Structure, 23, 2015
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4XJ5
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![BU of 4xj5 by Molmil](/molmil-images/mine/4xj5) | Crystal structure of Vibrio cholerae DncV 3'-deoxy GTP bound form | 分子名称: | 1,2-ETHANEDIOL, 3'-DEOXY-GUANOSINE-5'-TRIPHOSPHATE, Cyclic AMP-GMP synthase, ... | 著者 | Kato, K, Ishii, R, Ishitani, R, Nureki, O. | 登録日 | 2015-01-08 | 公開日 | 2015-04-29 | 最終更新日 | 2023-11-08 | 実験手法 | X-RAY DIFFRACTION (1.552 Å) | 主引用文献 | Structural Basis for the Catalytic Mechanism of DncV, Bacterial Homolog of Cyclic GMP-AMP Synthase Structure, 23, 2015
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4PDN
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![BU of 4pdn by Molmil](/molmil-images/mine/4pdn) | Crystal structure of E. coli YfcM | 分子名称: | MAGNESIUM ION, Uncharacterized protein | 著者 | Kobayashi, K, Ishii, R, Ishitani, R, Nureki, O. | 登録日 | 2014-04-19 | 公開日 | 2015-03-04 | 最終更新日 | 2024-03-20 | 実験手法 | X-RAY DIFFRACTION (1.448 Å) | 主引用文献 | The non-canonical hydroxylase structure of YfcM reveals a metal ion-coordination motif required for EF-P hydroxylation. Nucleic Acids Res., 42, 2014
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1B90
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![BU of 1b90 by Molmil](/molmil-images/mine/1b90) | BACILLUS CEREUS BETA-AMYLASE APO FORM | 分子名称: | ACETATE ION, CALCIUM ION, PROTEIN (BETA-AMYLASE), ... | 著者 | Mikami, B, Adachi, M, Kage, T, Sarikaya, E, Nanmori, T, Shinke, R, Utsumi, S. | 登録日 | 1999-03-06 | 公開日 | 1999-03-15 | 最終更新日 | 2023-12-27 | 実験手法 | X-RAY DIFFRACTION (2.5 Å) | 主引用文献 | Structure of raw starch-digesting Bacillus cereus beta-amylase complexed with maltose. Biochemistry, 38, 1999
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3WUH
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![BU of 3wuh by Molmil](/molmil-images/mine/3wuh) | Qri7 and AMP complex | 分子名称: | ADENOSINE MONOPHOSPHATE, ZINC ION, tRNA N6-adenosine threonylcarbamoyltransferase, ... | 著者 | Tominaga, T, Kobayashi, K, Ishii, R, Ishitani, R, Nureki, O. | 登録日 | 2014-04-24 | 公開日 | 2014-09-17 | 最終更新日 | 2023-11-08 | 実験手法 | X-RAY DIFFRACTION (2.937 Å) | 主引用文献 | Structure of Saccharomyces cerevisiae mitochondrial Qri7 in complex with AMP ACTA CRYSTALLOGR.,SECT.F, 70, 2014
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3WTR
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![BU of 3wtr by Molmil](/molmil-images/mine/3wtr) | Crystal structure of E. coli YfcM bound to Co(II) | 分子名称: | COBALT (II) ION, Uncharacterized protein | 著者 | Kobayashi, K, Ishii, R, Ishitani, R, Nureki, O. | 登録日 | 2014-04-19 | 公開日 | 2015-04-01 | 最終更新日 | 2023-11-08 | 実験手法 | X-RAY DIFFRACTION (1.96 Å) | 主引用文献 | The non-canonical hydroxylase structure of YfcM reveals a metal ion-coordination motif required for EF-P hydroxylation Nucleic Acids Res., 42, 2014
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4YZI
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![BU of 4yzi by Molmil](/molmil-images/mine/4yzi) | Crystal structure of blue-shifted channelrhodopsin mutant (T198G/G202A) | 分子名称: | OLEIC ACID, RETINAL, Sensory opsin A,Archaeal-type opsin 2, ... | 著者 | Kato, H.E, Kamiya, M, Ishitani, R, Hayashi, S, Nureki, O. | 登録日 | 2015-03-25 | 公開日 | 2015-05-27 | 最終更新日 | 2020-02-19 | 実験手法 | X-RAY DIFFRACTION (2.5 Å) | 主引用文献 | Atomistic design of microbial opsin-based blue-shifted optogenetics tools. Nat Commun, 6, 2015
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6LX6
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![BU of 6lx6 by Molmil](/molmil-images/mine/6lx6) | X-ray structure of human PPARalpha ligand binding domain-palmitic acid co-crystals obtained by delipidation and cross-seeding | 分子名称: | GLYCEROL, PALMITIC ACID, Peroxisome proliferator-activated receptor alpha | 著者 | Kamata, S, Saito, K, Honda, A, Ishikawa, R, Oyama, T, Ishii, I. | 登録日 | 2020-02-10 | 公開日 | 2020-11-11 | 最終更新日 | 2023-11-29 | 実験手法 | X-RAY DIFFRACTION (1.3 Å) | 主引用文献 | PPAR alpha Ligand-Binding Domain Structures with Endogenous Fatty Acids and Fibrates. Iscience, 23, 2020
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6LXB
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![BU of 6lxb by Molmil](/molmil-images/mine/6lxb) | X-ray structure of human PPARalpha ligand binding domain-saroglitazar co-crystals obtained by soaking | 分子名称: | (2S)-2-ethoxy-3-[4-[2-[2-methyl-5-(4-methylsulfanylphenyl)pyrrol-1-yl]ethoxy]phenyl]propanoic acid, Peroxisome proliferator-activated receptor alpha | 著者 | Kamata, S, Honda, A, Ishikawa, R, Akahane, M, Oyama, T, Ishii, I. | 登録日 | 2020-02-10 | 公開日 | 2020-11-11 | 最終更新日 | 2023-11-29 | 実験手法 | X-RAY DIFFRACTION (2.36 Å) | 主引用文献 | PPAR alpha Ligand-Binding Domain Structures with Endogenous Fatty Acids and Fibrates. Iscience, 23, 2020
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6LXA
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![BU of 6lxa by Molmil](/molmil-images/mine/6lxa) | X-ray structure of human PPARalpha ligand binding domain-eicosapentaenoic acid (EPA) co-crystals obtained by delipidation and cross-seeding | 分子名称: | 5,8,11,14,17-EICOSAPENTAENOIC ACID, GLYCEROL, Peroxisome proliferator-activated receptor alpha | 著者 | Kamata, S, Saito, K, Honda, A, Ishikawa, R, Oyama, T, Ishii, I. | 登録日 | 2020-02-10 | 公開日 | 2020-11-11 | 最終更新日 | 2023-11-29 | 実験手法 | X-RAY DIFFRACTION (1.23 Å) | 主引用文献 | PPAR alpha Ligand-Binding Domain Structures with Endogenous Fatty Acids and Fibrates. Iscience, 23, 2020
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