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PDB: 513 results

7ME5
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BU of 7me5 by Molmil
Structure of the extracellular WNT-binding module in Drl-2
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, Tyrosine-protein kinase transmembrane receptor DRL-2
Authors:Shi, F, Mendrola, J.M, Perry, K, Stayrook, S.E, Lemmon, M.A.
Deposit date:2021-04-06
Release date:2021-10-13
Last modified:2024-10-09
Method:X-RAY DIFFRACTION (2 Å)
Cite:ROR and RYK extracellular region structures suggest that receptor tyrosine kinases have distinct WNT-recognition modes.
Cell Rep, 37, 2021
3LMG
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BU of 3lmg by Molmil
Crystal structure of the ERBB3 kinase domain in complex with AMP-PNP
Descriptor: MAGNESIUM ION, PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER, Receptor tyrosine-protein kinase erbB-3
Authors:Shi, F, Lemmon, M.A.
Deposit date:2010-01-30
Release date:2010-04-21
Last modified:2023-09-06
Method:X-RAY DIFFRACTION (2.8 Å)
Cite:ErbB3/HER3 intracellular domain is competent to bind ATP and catalyze autophosphorylation.
Proc.Natl.Acad.Sci.USA, 107, 2010
8ROY
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BU of 8roy by Molmil
Structure of the human DDB1-DDA1-DCAF15 E3 ubiquitin ligase bound to compound furan 24
Descriptor: 1-[5-[[3,4-bis(chloranyl)-1~{H}-indol-7-yl]sulfamoyl]-3-methyl-furan-2-yl]carbonyl-~{N}-methyl-piperidine-4-carboxamide, DDB1- and CUL4-associated factor 15, DET1- and DDB1-associated protein 1, ...
Authors:Shilliday, F, Lucas, S.C.C, Richter, M, Michaelides, I.N, Fusani, L.
Deposit date:2024-01-12
Release date:2024-04-03
Last modified:2024-10-23
Method:ELECTRON MICROSCOPY (3.1 Å)
Cite:Optimization of Potent Ligands for the E3 Ligase DCAF15 and Evaluation of Their Use in Heterobifunctional Degraders.
J.Med.Chem., 67, 2024
8ROX
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BU of 8rox by Molmil
Structure of the human DDB1-DDA1-DCAF15 E3 ubiquitin ligase bound to compound furan 12
Descriptor: 5-[[3,4-bis(chloranyl)-1~{H}-indol-7-yl]sulfamoyl]-~{N},~{N},3-trimethyl-furan-2-carboxamide;ethane, DDB1- and CUL4-associated factor 15, DET1- and DDB1-associated protein 1, ...
Authors:Shilliday, F, Lucas, S.C.C, Richter, M, Michaelides, I.N, Fusani, L.
Deposit date:2024-01-12
Release date:2024-04-03
Last modified:2024-11-20
Method:ELECTRON MICROSCOPY (3.3 Å)
Cite:Optimization of Potent Ligands for the E3 Ligase DCAF15 and Evaluation of Their Use in Heterobifunctional Degraders.
J.Med.Chem., 67, 2024
2RPZ
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BU of 2rpz by Molmil
Solution structure of the monomeric form of mouse APOBEC2
Descriptor: Probable C->U-editing enzyme APOBEC-2, ZINC ION
Authors:Hayashi, F, Nagata, T, Nagashima, T, Muto, Y, Inoue, M, Kigawa, T, Yokoyama, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2008-12-11
Release date:2009-12-22
Last modified:2024-05-29
Method:SOLUTION NMR
Cite:Solution structure of the monomeric form of mouse APOBEC2
To be Published
1UH6
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BU of 1uh6 by Molmil
Solution Structure of the murine ubiquitin-like 5 protein from RIKEN cDNA 0610031K06
Descriptor: ubiquitin-like 5
Authors:Hayashi, F, Shirouzu, M, Terada, T, Kigawa, T, Inoue, M, Yabuki, T, Aoki, M, Seki, E, Matsuda, T, Hirota, H, Yoshida, M, Tanaka, A, Osanai, T, Arakawa, T, Carninci, P, Kawai, J, Hayashizaki, Y, Yokoyama, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2003-06-25
Release date:2003-12-25
Last modified:2023-12-27
Method:SOLUTION NMR
Cite:Solution Structure of the murine ubiquitin-like 5 protein from RIKEN cDNA 0610031K06
To be Published
2HR1
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BU of 2hr1 by Molmil
Ternary structure of WT M.HhaI C5-Cytosine DNA methyltransferase with unmodified DNA and AdoHcy
Descriptor: 5'-D(*GP*AP*TP*AP*GP*CP*GP*CP*TP*AP*TP*C)-3', 5'-D(*TP*GP*AP*TP*AP*GP*CP*GP*CP*TP*AP*TP*C)-3', Modification methylase HhaI, ...
Authors:Shieh, F.
Deposit date:2006-07-19
Release date:2006-09-19
Last modified:2024-02-14
Method:X-RAY DIFFRACTION (1.96 Å)
Cite:The Role of Arg165 Towards Base Flipping, Base Stabilization and Catalysis in M.HhaI.
J.Mol.Biol., 362, 2006
3VJK
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BU of 3vjk by Molmil
Crystal structure of human depiptidyl peptidase IV (DPP-4) in complex with MP-513
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, Dipeptidyl peptidase 4, ...
Authors:Akahoshi, F, Kishida, H, Miyaguchi, I, Yoshida, T, Ishii, S.
Deposit date:2011-10-24
Release date:2012-10-24
Last modified:2024-11-13
Method:X-RAY DIFFRACTION (2.49 Å)
Cite:Discovery and preclinical profile of teneligliptin (3-[(2S,4S)-4-[4-(3-methyl-1-phenyl-1H-pyrazol-5-yl)piperazin-1-yl]pyrrolidin-2-ylcarbonyl]thiazolidine): A highly potent, selective, long-lasting and orally active dipeptidyl peptidase IV inhibitor for the treatment of type 2 diabetes
Bioorg.Med.Chem., 20, 2012
3VJM
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BU of 3vjm by Molmil
Crystal structure of human depiptidyl peptidase IV (DPP-4) in complex with a prolylthiazolidine inhibitor #1
Descriptor: 1,3-thiazolidin-3-yl[(2S,4S)-4-{4-[2-(trifluoromethyl)quinolin-4-yl]piperazin-1-yl}pyrrolidin-2-yl]methanone, 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, ...
Authors:Akahoshi, F, Kishida, H, Miyaguchi, I, Yoshida, T, Ishii, S.
Deposit date:2011-10-24
Release date:2012-08-15
Last modified:2024-10-09
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Fused bicyclic heteroarylpiperazine-substituted l-prolylthiazolidines as highly potent DPP-4 inhibitors lacking the electrophilic nitrile group
Bioorg.Med.Chem., 20, 2012
3VJL
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BU of 3vjl by Molmil
Crystal structure of human depiptidyl peptidase IV (DPP-4) in complex with a prolylthiazolidine inhibitor #2
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, Dipeptidyl peptidase 4, ...
Authors:Akahoshi, F, Kishida, H, Miyaguchi, I, Yoshida, T, Ishii, S.
Deposit date:2011-10-24
Release date:2012-10-24
Last modified:2024-10-16
Method:X-RAY DIFFRACTION (2.393 Å)
Cite:Discovery and preclinical profile of teneligliptin (3-[(2S,4S)-4-[4-(3-methyl-1-phenyl-1H-pyrazol-5-yl)piperazin-1-yl]pyrrolidin-2-ylcarbonyl]thiazolidine): A highly potent, selective, long-lasting and orally active dipeptidyl peptidase IV inhibitor for the treatment of type 2 diabetes
Bioorg.Med.Chem., 20, 2012
2CSW
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BU of 2csw by Molmil
Solution structure of the FHA domain of human ubiquitin ligase protein RNF8
Descriptor: Ubiquitin ligase protein RNF8
Authors:Hayashi, F, Nagashima, T, Yokoyama, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2005-05-23
Release date:2005-11-23
Last modified:2024-05-29
Method:SOLUTION NMR
Cite:Solution structure of the FHA domain of human ubiquitin ligase protein RNF8
To be Published
2YUB
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BU of 2yub by Molmil
Solution structure of the PDZ domain from mouse LIM domain kinase
Descriptor: LIM domain kinase 2
Authors:Hayashi, F, Suetake, T, Yokoyama, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2007-04-06
Release date:2008-04-08
Last modified:2024-05-29
Method:SOLUTION NMR
Cite:Solution structure of the PDZ domain from mouse LIM domain kinase
To be Published
2YUC
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BU of 2yuc by Molmil
Solution structure of the TRAF-type zinc finger domains (102-164) from human TNF receptor associated factor 4
Descriptor: TNF receptor-associated factor 4, ZINC ION
Authors:Hayashi, F, Suetake, T, Yokoyama, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2007-04-06
Release date:2008-04-08
Last modified:2024-05-29
Method:SOLUTION NMR
Cite:Solution structure of the TRAF-type zinc finger domains (102-164) from human TNF receptor associated factor 4
To be Published
1WLO
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BU of 1wlo by Molmil
Solution structure of the hypothetical protein from thermus thermophilus HB8
Descriptor: sufE protein
Authors:Hayashi, F, Yokoyama, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2004-06-28
Release date:2005-07-12
Last modified:2024-05-01
Method:SOLUTION NMR
Cite:Solution structure of the hypothetical protein from thermus thermophilus HB8
to be published
1WLN
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BU of 1wln by Molmil
Solution structure of the FHA domain of mouse Afadin 6
Descriptor: Afadin
Authors:Hayashi, F, Hirata, Y, Guentert, P, Yokoyama, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2004-06-28
Release date:2005-07-12
Last modified:2024-05-29
Method:SOLUTION NMR
Cite:Solution structure of the FHA domain of mouse Afadin 6
TO BE PUBLISHED
2B0T
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BU of 2b0t by Molmil
Structure of Monomeric NADP Isocitrate dehydrogenase
Descriptor: MAGNESIUM ION, NADP Isocitrate dehydrogenase
Authors:Imabayashi, F, Aich, S, Prasad, L, Delbaere, L.T.
Deposit date:2005-09-14
Release date:2006-01-31
Last modified:2024-02-14
Method:X-RAY DIFFRACTION (1.75 Å)
Cite:Substrate-free structure of a monomeric NADP isocitrate dehydrogenase: An open conformation phylogenetic relationship of isocitrate dehydrogenase.
Proteins, 63, 2006
2QCO
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BU of 2qco by Molmil
Crystal structure of the transcriptional regulator CmeR from Campylobacter jejuni
Descriptor: CmeR, GLYCEROL
Authors:Gu, R, Su, C, Shi, F, Li, M, McDermott, G, Zhang, Q, Yu, E.W.
Deposit date:2007-06-19
Release date:2008-04-15
Last modified:2024-02-21
Method:X-RAY DIFFRACTION (2.25 Å)
Cite:Crystal structure of the transcriptional regulator CmeR from Campylobacter jejuni.
J.Mol.Biol., 372, 2007
7ME4
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BU of 7me4 by Molmil
Structure of the extracellular WNT-binding module in Drosophila Ror2/Nrk
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, PALMITOLEIC ACID, Tyrosine-protein kinase transmembrane receptor Ror2
Authors:Mendrola, J.M, Shi, F, Perry, K, Stayrook, S.E, Lemmon, M.A.
Deposit date:2021-04-06
Release date:2021-10-13
Last modified:2024-10-23
Method:X-RAY DIFFRACTION (1.75 Å)
Cite:ROR and RYK extracellular region structures suggest that receptor tyrosine kinases have distinct WNT-recognition modes.
Cell Rep, 37, 2021
5XR9
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BU of 5xr9 by Molmil
Crystal structure of Human Hsp90 with FS6
Descriptor: Heat shock protein HSP 90-alpha, N-[3-[5-bromanyl-2,4-bis(oxidanyl)phenyl]-4-(4-methoxyphenyl)-1,2-oxazol-5-yl]ethanamide
Authors:Li, J, Shi, F, Xiong, B, He, J.H.
Deposit date:2017-06-08
Release date:2018-06-20
Last modified:2024-03-27
Method:X-RAY DIFFRACTION (1.501 Å)
Cite:Crystal structure of Human Hsp90 with FS6
To Be Published
5XRE
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BU of 5xre by Molmil
Crystal Structure of the human Hsp90-alpha N-domain bound to the hsp90 inhibitor JX1
Descriptor: Heat shock protein HSP 90-alpha, N-[4-(4-methoxyphenyl)-3-[5-(8-methylquinolin-5-yl)-2,4-bis(oxidanyl)phenyl]-1,2-oxazol-5-yl]ethanamide
Authors:Li, J, Shi, F, Xiong, B, He, J.H.
Deposit date:2017-06-08
Release date:2018-07-04
Last modified:2024-03-27
Method:X-RAY DIFFRACTION (1.497 Å)
Cite:Crystal Structure of the human Hsp90-alpha N-domain bound to the hsp90 inhibitor JX1
To Be Published
5XQE
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BU of 5xqe by Molmil
Crystal structure of Human Hsp90 with FS3
Descriptor: Heat shock protein HSP 90-alpha, N-[3-[5-chloranyl-2,4-bis(oxidanyl)phenyl]-4-(4-methoxyphenyl)-1,2-oxazol-5-yl]-2-methyl-propanamide
Authors:Li, J, Shi, F, Xiong, B, He, J.H.
Deposit date:2017-06-07
Release date:2018-06-20
Last modified:2024-03-27
Method:X-RAY DIFFRACTION (1.699 Å)
Cite:Crystal structure of Human Hsp90 with FS3
To Be Published
5XRD
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BU of 5xrd by Molmil
Crystal Structure of the human Hsp90-alpha N-domain bound to the hsp90 inhibitor FS7
Descriptor: Heat shock protein HSP 90-alpha, N-{3-[2,4-dihydroxy-5-(propan-2-yl)phenyl]-4-(4-methoxyphenyl)-1H-pyrazol-5-yl}acetamide
Authors:Li, J, Shi, F, Xiong, B, He, J.H.
Deposit date:2017-06-08
Release date:2019-05-22
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (1.3 Å)
Cite:Crystal Structure of the human Hsp90-alpha N-domain bound to the hsp90 inhibitor FS7
To Be Published
5XQD
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BU of 5xqd by Molmil
Crystal structure of Human Hsp90 with FS2
Descriptor: Heat shock protein HSP 90-alpha, N-[3-[5-chloranyl-2,4-bis(oxidanyl)phenyl]-4-(4-methoxyphenyl)-1,2-oxazol-5-yl]propanamide
Authors:Li, J, Shi, F, Xiong, B, He, J.H.
Deposit date:2017-06-07
Release date:2018-06-20
Last modified:2024-03-27
Method:X-RAY DIFFRACTION (1.6 Å)
Cite:Crystal structure of Human Hsp90 with FS2
To Be Published
5XR5
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BU of 5xr5 by Molmil
Crystal structure of Human Hsp90 with FS4
Descriptor: Heat shock protein HSP 90-alpha, N-[3-[5-chloranyl-2,4-bis(oxidanyl)phenyl]-4-(4-methoxyphenyl)-1,2-oxazol-5-yl]-2,2-dimethyl-propanamide
Authors:Li, J, Shi, F, Xiong, B, He, J.H.
Deposit date:2017-06-07
Release date:2018-06-20
Last modified:2024-03-27
Method:X-RAY DIFFRACTION (1.6 Å)
Cite:Crystal structure of Human Hsp90 with FS4
To Be Published
5XRB
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BU of 5xrb by Molmil
Crystal Structure of the human Hsp90-alpha N-domain bound to the hsp90 inhibitor FJ5
Descriptor: Heat shock protein HSP 90-alpha, N-[3-[5-chloranyl-2,4-bis(oxidanyl)phenyl]-4-(4-methoxyphenyl)-1,2-oxazol-5-yl]cyclopropanecarboxamide
Authors:Li, J, Shi, F, Xiong, B, He, J.H.
Deposit date:2017-06-08
Release date:2018-07-04
Last modified:2024-03-27
Method:X-RAY DIFFRACTION (1.65 Å)
Cite:Crystal Structure of the human Hsp90-alpha N-domain bound to the hsp90 inhibitor FJ5
To Be Published

227561

PDB entries from 2024-11-20

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