Loading
PDBj
メニューPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help
PDB: 243 件

5NM5
DownloadVisualize
BU of 5nm5 by Molmil
Tubulin Darpin room-temperature structure in complex with Colchicine determined by serial millisecond crystallography
分子名称: Designed Ankyrin Repeat Protein (DARPIN) D1, GUANOSINE-5'-DIPHOSPHATE, GUANOSINE-5'-TRIPHOSPHATE, ...
著者Weinert, T, Olieric, N, James, D, Gashi, D, Nogly, P, Jaeger, K, Steinmetz, M.O, Standfuss, J.
登録日2017-04-05
公開日2017-09-27
最終更新日2024-01-17
実験手法X-RAY DIFFRACTION (2.05 Å)
主引用文献Serial millisecond crystallography for routine room-temperature structure determination at synchrotrons.
Nat Commun, 8, 2017
5NQT
DownloadVisualize
BU of 5nqt by Molmil
Tubulin Darpin room-temperature structure determined by serial millisecond crystallography
分子名称: DESIGNED ANKYRIN REPEAT PROTEIN (DARPIN) D1, GUANOSINE-5'-DIPHOSPHATE, GUANOSINE-5'-TRIPHOSPHATE, ...
著者Weinert, T, Olieric, N, James, D, Gashi, D, Nogly, P, Jaeger, K, Steinmetz, M.O, Standfuss, J.
登録日2017-04-21
公開日2017-09-27
最終更新日2024-01-17
実験手法X-RAY DIFFRACTION (2.15 Å)
主引用文献Serial millisecond crystallography for routine room-temperature structure determination at synchrotrons.
Nat Commun, 8, 2017
5NM4
DownloadVisualize
BU of 5nm4 by Molmil
A2A Adenosine receptor room-temperature structure determined by serial femtosecond crystallography
分子名称: 4-{2-[(7-amino-2-furan-2-yl[1,2,4]triazolo[1,5-a][1,3,5]triazin-5-yl)amino]ethyl}phenol, Adenosine receptor A2a,Soluble cytochrome b562,Adenosine receptor A2a, CHOLESTEROL, ...
著者Weinert, T, Cheng, R, James, D, Gashi, D, Nogly, P, Jaeger, K, Hennig, M, Standfuss, J.
登録日2017-04-05
公開日2017-09-27
最終更新日2018-11-14
実験手法X-RAY DIFFRACTION (1.7 Å)
主引用文献Serial millisecond crystallography for routine room-temperature structure determination at synchrotrons.
Nat Commun, 8, 2017
5NM2
DownloadVisualize
BU of 5nm2 by Molmil
A2A Adenosine receptor cryo structure
分子名称: (2R)-2,3-dihydroxypropyl (9Z)-octadec-9-enoate, (2S)-2,3-dihydroxypropyl (9Z)-octadec-9-enoate, 4-{2-[(7-amino-2-furan-2-yl[1,2,4]triazolo[1,5-a][1,3,5]triazin-5-yl)amino]ethyl}phenol, ...
著者Weinert, T, Cheng, R, James, D, Gashi, D, Nogly, P, Jaeger, K, Dore, A.S, Geng, T, Cooke, R, Hennig, M, Standfuss, J.
登録日2017-04-05
公開日2017-09-27
最終更新日2024-01-17
実験手法X-RAY DIFFRACTION (1.948 Å)
主引用文献Serial millisecond crystallography for routine room-temperature structure determination at synchrotrons.
Nat Commun, 8, 2017
6K55
DownloadVisualize
BU of 6k55 by Molmil
Inactivated mutant (D140A) of Hyperthermophilic GH6 cellobiohydrolase II (HmCel6A) in complex with hexasaccharide
分子名称: Glucanase, MAGNESIUM ION, beta-D-glucopyranose-(1-4)-beta-D-glucopyranose-(1-4)-beta-D-glucopyranose-(1-4)-beta-D-glucopyranose-(1-4)-beta-D-glucopyranose-(1-4)-beta-D-glucopyranose-(1-4)-beta-D-glucopyranose
著者Baba, S, Takeda, M, Okuma, J, Hirose, Y, Nishimura, A, Takata, M, Oda, K, Shibata, D, Kondo, Y, Kumasaka, T.
登録日2019-05-28
公開日2020-06-03
最終更新日2023-11-22
実験手法X-RAY DIFFRACTION (2.883 Å)
主引用文献A hyperthermophilic cellobiohydrolase mined from a hot spring metagenomic data
To Be Published
2P4L
DownloadVisualize
BU of 2p4l by Molmil
Structure and sodium channel activity of an excitatory I1-superfamily conotoxin
分子名称: I-superfamily conotoxin r11a
著者Buczek, O, Wei, D.X, Babon, J.J, Yang, X.D, Fiedler, B, Yoshikami, D, Olivera, B.M, Bulaj, G, Norton, R.S.
登録日2007-03-12
公開日2007-09-25
最終更新日2022-03-16
実験手法SOLUTION NMR
主引用文献Structure and Sodium Channel Activity of an Excitatory I(1)-Superfamily Conotoxin
Biochemistry, 46, 2007
3OWN
DownloadVisualize
BU of 3own by Molmil
Potent macrocyclic renin inhibitors
分子名称: (2S,4S)-4-hydroxy-2-(1-methylethyl)-4-[(4R,13S)-18-[methyl(methylsulfonyl)amino]-2,15-dioxo-4-phenyl-11-oxa-3,14-diazatricyclo[14.3.1.1~5,9~]henicosa-1(20),5(21),6,8,16,18-hexaen-13-yl]-N-(2-methylpropyl)butanamide, (2S,4S)-4-hydroxy-2-(1-methylethyl)-4-[(4S,13S)-18-[methyl(methylsulfonyl)amino]-2,15-dioxo-4-phenyl-11-oxa-3,14-diazatricyclo[14.3.1.1~5,9~]henicosa-1(20),5(21),6,8,16,18-hexaen-13-yl]-N-(2-methylpropyl)butanamide, ACETATE ION, ...
著者Borkakoti, N, Derbyshire, D.
登録日2010-09-20
公開日2010-12-15
最終更新日2011-07-13
実験手法X-RAY DIFFRACTION (2 Å)
主引用文献Design and synthesis of potent macrocyclic renin inhibitors.
Bioorg.Med.Chem.Lett., 21, 2011
7CBD
DownloadVisualize
BU of 7cbd by Molmil
Catalytic domain of Cellulomonas fimi Cel6B
分子名称: Exoglucanase A
著者Nakamura, A, Ishiwata, D, Visootsat, A, Uchiyama, T, Mizutani, K, Kaneko, S, Murata, T, Igarashi, K, Iino, R.
登録日2020-06-12
公開日2020-08-26
最終更新日2023-11-29
実験手法X-RAY DIFFRACTION (1.3 Å)
主引用文献Domain architecture divergence leads to functional divergence in binding and catalytic domains of bacterial and fungal cellobiohydrolases.
J.Biol.Chem., 295, 2020
4DFF
DownloadVisualize
BU of 4dff by Molmil
The SAR development of dihydroimidazoisoquinoline derivatives as phosphodiesterase 10A inhibitors for the treatment of schizophrenia
分子名称: 8,9-dimethoxy-1-(1,3-thiazol-5-yl)-5,6-dihydroimidazo[5,1-a]isoquinoline, MAGNESIUM ION, ZINC ION, ...
著者Ho, G.D, Seganish, W.M, Bercovici, A, Tulshian, D, Greenlee, W.J, Van Rijn, R, Hruza, A, Xiao, L, Rindgen, D, Mullins, D, Guzzi, M, Zhang, X, Bleichardt, C, Hodgson, R.
登録日2012-01-23
公開日2012-03-14
最終更新日2012-04-04
実験手法X-RAY DIFFRACTION (2.11 Å)
主引用文献The SAR development of dihydroimidazoisoquinoline derivatives as phosphodiesterase 10A inhibitors for the treatment of schizophrenia.
Bioorg.Med.Chem.Lett., 22, 2012
5HZH
DownloadVisualize
BU of 5hzh by Molmil
Crystal structure of photoinhibitable Rac1 containing C450A mutant LOV2 domain
分子名称: CALCIUM ION, FLAVIN MONONUCLEOTIDE, GUANOSINE-5'-TRIPHOSPHATE, ...
著者Tarnawski, M, Dagliyan, O, Chu, P.H, Shirvanyants, D, Dokholyan, N.V, Hahn, K.M, Schlichting, I.
登録日2016-02-02
公開日2016-12-21
最終更新日2024-01-10
実験手法X-RAY DIFFRACTION (2.6 Å)
主引用文献Engineering extrinsic disorder to control protein activity in living cells.
Science, 354, 2016
5HZJ
DownloadVisualize
BU of 5hzj by Molmil
Crystal structure of photoinhibitable Intersectin1 containing wildtype LOV2 domain
分子名称: FLAVIN MONONUCLEOTIDE, Intersectin-1,NPH1-1,Intersectin-1
著者Tarnawski, M, Dagliyan, O, Chu, P.H, Shirvanyants, D, Dokholyan, N.V, Hahn, K.M, Schlichting, I.
登録日2016-02-02
公開日2016-12-21
最終更新日2024-01-10
実験手法X-RAY DIFFRACTION (2.6 Å)
主引用文献Engineering extrinsic disorder to control protein activity in living cells.
Science, 354, 2016
5HZI
DownloadVisualize
BU of 5hzi by Molmil
Crystal structure of photoinhibitable Intersectin1 containing C450M mutant LOV2 domain
分子名称: FLAVIN MONONUCLEOTIDE, Intersectin-1,NPH1-1,Intersectin-1
著者Tarnawski, M, Dagliyan, O, Chu, P.H, Shirvanyants, D, Dokholyan, N.V, Hahn, K.M, Schlichting, I.
登録日2016-02-02
公開日2016-12-21
最終更新日2024-01-10
実験手法X-RAY DIFFRACTION (2.6 Å)
主引用文献Engineering extrinsic disorder to control protein activity in living cells.
Science, 354, 2016
5HZK
DownloadVisualize
BU of 5hzk by Molmil
Crystal structure of photoinhibitable Intersectin1 containing wildtype LOV2 domain in complex with Cdc42
分子名称: Cell division control protein 42 homolog, FLAVIN MONONUCLEOTIDE, GUANOSINE-5'-DIPHOSPHATE, ...
著者Tarnawski, M, Dagliyan, O, Chu, P.H, Shirvanyants, D, Dokholyan, N.V, Hahn, K.M, Schlichting, I.
登録日2016-02-02
公開日2016-12-21
最終更新日2024-01-10
実験手法X-RAY DIFFRACTION (3.3 Å)
主引用文献Engineering extrinsic disorder to control protein activity in living cells.
Science, 354, 2016
5ZU2
DownloadVisualize
BU of 5zu2 by Molmil
Effect of mutation (R554A) on FAD modification in Aspergillus oryzae RIB40formate oxidase
分子名称: (4S)-2-METHYL-2,4-PENTANEDIOL, ACETATE ION, FLAVIN-ADENINE DINUCLEOTIDE, ...
著者Mikami, B, Uchida, H, Doubayashi, D.
登録日2018-05-06
公開日2019-05-22
最終更新日2024-03-27
実験手法X-RAY DIFFRACTION (2.441 Å)
主引用文献The microenvironment surrounding FAD mediates its conversion to 8-formyl-FAD in Aspergillus oryzae RIB40 formate oxidase.
J.Biochem., 166, 2019
6KBR
DownloadVisualize
BU of 6kbr by Molmil
Crystal structure of Human KLK4 and SPINK2 derived KLK4 inhibitor complex
分子名称: GLYCEROL, K41043, Kallikrein-4
著者Kawaguchi, Y, Nishimiya, D.
登録日2019-06-26
公開日2019-07-17
最終更新日2023-11-22
実験手法X-RAY DIFFRACTION (2 Å)
主引用文献A protein scaffold, engineered SPINK2, for generation of inhibitors with high affinity and specificity against target proteases.
Sci Rep, 9, 2019
5ZU3
DownloadVisualize
BU of 5zu3 by Molmil
Effect of mutation (R554K) on FAD modification in Aspergillus oryzae RIB40formate oxidase
分子名称: (4S)-2-METHYL-2,4-PENTANEDIOL, ACETATE ION, Formate oxidase, ...
著者Mikami, B, Uchida, H, Doubayashi, D.
登録日2018-05-06
公開日2019-05-22
最終更新日2024-03-27
実験手法X-RAY DIFFRACTION (2.4 Å)
主引用文献The microenvironment surrounding FAD mediates its conversion to 8-formyl-FAD in Aspergillus oryzae RIB40 formate oxidase.
J.Biochem., 166, 2019
3JRW
DownloadVisualize
BU of 3jrw by Molmil
Phosphorylated BC domain of ACC2
分子名称: Acetyl-CoA carboxylase 2
著者Cho, Y.S, Lee, J.I, Shin, D, Kim, H.T, Lee, T.G, Heo, Y.S.
登録日2009-09-09
公開日2010-01-12
最終更新日2023-11-01
実験手法X-RAY DIFFRACTION (2.6 Å)
主引用文献Molecular mechanism for the regulation of human ACC2 through phosphorylation by AMPK
Biochem.Biophys.Res.Commun., 391, 2010
3JRX
DownloadVisualize
BU of 3jrx by Molmil
Crystal structure of the BC domain of ACC2 in complex with soraphen A
分子名称: Acetyl-CoA carboxylase 2, SORAPHEN A
著者Cho, Y.S, Lee, J.I, Shin, D, Kim, H.T, Lee, T.G, Heo, Y.S.
登録日2009-09-09
公開日2010-01-12
最終更新日2023-11-01
実験手法X-RAY DIFFRACTION (2.5 Å)
主引用文献Molecular mechanism for the regulation of human ACC2 through phosphorylation by AMPK.
Biochem.Biophys.Res.Commun., 391, 2010
1Q2J
DownloadVisualize
BU of 1q2j by Molmil
Structural basis for tetrodotoxin-resistant sodium channel binding by mu-conotoxin SmIIIA
分子名称: Mu-conotoxin SmIIIA
著者Keizer, D.W, West, P.J, Lee, E.F, Olivera, B.M, Bulaj, G, Yoshikami, D, Norton, R.S.
登録日2003-07-24
公開日2004-02-24
最終更新日2020-06-24
実験手法SOLUTION NMR
主引用文献Structural basis for tetrodotoxin-resistant sodium channel binding by mu-conotoxin SmIIIA.
J.Biol.Chem., 278, 2003
7XAR
DownloadVisualize
BU of 7xar by Molmil
Crystal structure of 3C-like protease from SARS-CoV-2 in complex with covalent inhibitor
分子名称: 3C-like proteinase, 4-fluoranyl-~{N}-[(2~{S})-1-[2-(2-fluoranylethanoyl)-2-[[(3~{S})-2-oxidanylidenepyrrolidin-3-yl]methyl]hydrazinyl]-4-methyl-1-oxidanylidene-pentan-2-yl]-1~{H}-indole-2-carboxamide, CHLORIDE ION, ...
著者Caaveiro, J.M.M, Ochi, J, Takahashi, D, Ueda, T, Ojida, A.
登録日2022-03-18
公開日2022-11-09
最終更新日2023-11-29
実験手法X-RAY DIFFRACTION (1.6 Å)
主引用文献Discovery of Chlorofluoroacetamide-Based Covalent Inhibitors for Severe Acute Respiratory Syndrome Coronavirus 2 3CL Protease.
J.Med.Chem., 65, 2022
4LFU
DownloadVisualize
BU of 4lfu by Molmil
Crystal structure of Escherichia coli SdiA in the space group C2
分子名称: CHLORIDE ION, Regulatory protein SdiA, TETRAETHYLENE GLYCOL
著者Kim, T, Duong, T, Wu, C.A, Choi, J, Lan, N, Kang, S.W, Lokanath, N.K, Shin, D, Hwang, H.Y, Kim, K.K.
登録日2013-06-27
公開日2014-03-19
最終更新日2024-03-20
実験手法X-RAY DIFFRACTION (2.26 Å)
主引用文献Structural insights into the molecular mechanism of Escherichia coli SdiA, a quorum-sensing receptor
Acta Crystallogr.,Sect.D, 70, 2014
4LGW
DownloadVisualize
BU of 4lgw by Molmil
Crystal structure of Escherichia coli SdiA in the space group P6522
分子名称: GLYCEROL, Regulatory protein SdiA
著者Kim, T, Duong, T, Wu, C.A, Choi, J, Lan, N, Kang, S.W, Lokanath, N.K, Shin, D, Hwang, H.Y, Kim, K.K.
登録日2013-06-28
公開日2014-03-19
最終更新日2024-03-20
実験手法X-RAY DIFFRACTION (2.7 Å)
主引用文献Structural insights into the molecular mechanism of Escherichia coli SdiA, a quorum-sensing receptor
Acta Crystallogr.,Sect.D, 70, 2014
4P24
DownloadVisualize
BU of 4p24 by Molmil
pore forming toxin
分子名称: (4S)-2-METHYL-2,4-PENTANEDIOL, Alpha-hemolysin
著者Sugawara, T, Yamashita, D, Tanaka, Y, Tanaka, I, Yao, M.
登録日2014-03-01
公開日2015-03-11
最終更新日2023-12-27
実験手法X-RAY DIFFRACTION (3.1 Å)
主引用文献Structural basis for pore-forming mechanism of staphylococcal alpha-hemolysin.
Toxicon, 108, 2015
4EWO
DownloadVisualize
BU of 4ewo by Molmil
Design and synthesis of potent hydroxyethylamine (hea) bace-1 inhibitors
分子名称: Beta-secretase 1, N-[(2S,3R)-4-{[(4S)-2-(2,2-dimethylpropyl)-6,6-dimethyl-4,5,6,7-tetrahydro-2H-indazol-4-yl]amino}-3-hydroxy-1-phenylbutan-2-yl]acetamide
著者Borkakoti, N, Lindberg, J, Derbyshire, D.
登録日2012-04-27
公開日2012-10-31
実験手法X-RAY DIFFRACTION (1.8 Å)
主引用文献Design and synthesis of potent hydroxyethylamine (HEA) BACE-1 inhibitors carrying prime side 4,5,6,7-tetrahydrobenzazole and 4,5,6,7-tetrahydropyridinoazole templates.
Bioorg.Med.Chem.Lett., 22, 2012
4EXG
DownloadVisualize
BU of 4exg by Molmil
Design and synthesis of potent hydroxyethylamine (hea) bace-1 inhibitors
分子名称: Beta-secretase 1, N-[(2S,3R)-4-{[(4S)-6-(2,2-dimethylpropyl)-2,2-dimethyl-3,4-dihydro-2H-thieno[2,3-b]pyran-4-yl]amino}-3-hydroxy-1-phenylbutan-2-yl]acetamide
著者Borkakoti, N, Lindberg, J, Derbyshire, D.
登録日2012-04-30
公開日2012-10-31
実験手法X-RAY DIFFRACTION (1.8 Å)
主引用文献Design and synthesis of potent hydroxyethylamine (HEA) BACE-1 inhibitors carrying prime side 4,5,6,7-tetrahydrobenzazole and 4,5,6,7-tetrahydropyridinoazole templates.
Bioorg.Med.Chem.Lett., 22, 2012

221371

件を2024-06-19に公開中

PDB statisticsPDBj update infoContact PDBjnumon