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PDB: 356 件

3LTU
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5-SeMe-dU containing DNA 8mer
分子名称: 5'-D(*GP*(UMS)P*GP*(T5S)P*AP*CP*AP*C)-3'
著者Sheng, J, Hassan, A.E.A, Zhang, W, Gan, J, Huang, Z.
登録日2010-02-16
公開日2010-03-09
最終更新日2023-09-06
実験手法X-RAY DIFFRACTION (1.4 Å)
主引用文献Synthesis of Pyrimidine Modified Seleno-DNA as a Novel Approach to Antisense Candidate
Chemistryselect, 8, 2023
5CH0
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Crystal structure of an A-form DNA duplex containing 5-hydroxylmethylcytidine
分子名称: DNA (5'-R(*G)-D(P*(UMS))-R(P*G)-D(P*T)-R(P*A)-D(P*(5HC))-R(P*AP*C)-3')
著者Sheng, J.
登録日2015-07-10
公開日2016-07-20
最終更新日2023-09-27
実験手法X-RAY DIFFRACTION (1.4 Å)
主引用文献Crystal structure of an A-form DNA duplex containing 5-hydroxylmethylcytidine
To Be Published
5CJY
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Crystal structure of a B-form DNA duplex containing 5-hydroxylmethylcytidine
分子名称: DNA (5'-D(*CP*GP*(5HC)P*GP*AP*AP*TP*TP*CP*GP*CP*G)-3'), MAGNESIUM ION
著者Sheng, J.
登録日2015-07-15
公開日2016-07-20
最終更新日2023-09-27
実験手法X-RAY DIFFRACTION (1.55 Å)
主引用文献Crystal structure of a B-form DNA duplex containing 5-hydroxylmethylcytidine
To Be Published
8DL7
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BU of 8dl7 by Molmil
Cryo-EM structure of human ferroportin/slc40 bound to minihepcidin PR73 in nanodisc
分子名称: (2S)-3-(hexadecanoyloxy)-2-[(9Z)-octadec-9-enoyloxy]propyl 2-(trimethylammonio)ethyl phosphate, 11F9 heavy-chain, 11F9 light-chain, ...
著者Shen, J, Wilbon, A.S, Pan, Y, Zhou, M.
登録日2022-07-07
公開日2022-12-07
最終更新日2023-11-15
実験手法ELECTRON MICROSCOPY (2.7 Å)
主引用文献Structural basis of ferroportin inhibition by minihepcidin PR73.
Plos Biol., 21, 2023
8DL8
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Cryo-EM structure of human ferroportin/slc40 bound to Co2+ in nanodisc
分子名称: 11F9 heavy-chain, 11F9 light-chain, COBALT (II) ION, ...
著者Shen, J, Wilbon, A.S, Pan, Y, Zhou, M.
登録日2022-07-07
公開日2022-12-07
最終更新日2023-02-01
実験手法ELECTRON MICROSCOPY (3 Å)
主引用文献Structural basis of ferroportin inhibition by minihepcidin PR73.
Plos Biol., 21, 2023
8DL6
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Cryo-EM structure of human ferroportin/slc40 bound to Ca2+ in nanodisc
分子名称: 11F9 heavy-chain, 11F9 light-chain, CALCIUM ION, ...
著者Shen, J, Wilbon, A.S, Pan, Y, Zhou, M.
登録日2022-07-07
公開日2023-01-25
実験手法ELECTRON MICROSCOPY (3 Å)
主引用文献Mechanism of Ca 2+ transport by ferroportin.
Elife, 12, 2023
6WIK
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BU of 6wik by Molmil
Cryo-EM structure of SLC40/ferroportin with Fab in the presence of hepcidin
分子名称: 11F9 Fab heavy-chain, 11F9 Fab light-chain, Solute carrier family 40 protein
著者Shen, J, Ren, Z, Pan, Y, Gao, S, Yan, N, Zhou, M.
登録日2020-04-10
公開日2020-11-11
最終更新日2022-08-31
実験手法ELECTRON MICROSCOPY (3.4 Å)
主引用文献Structural basis of ion transport and inhibition in ferroportin.
Nat Commun, 11, 2020
3HGD
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BU of 3hgd by Molmil
Crystal Structure of 2-Se-Thymidine Derivatized DNA
分子名称: 5'-D(*GP*(UMS)P*GP*(US3)P*AP*CP*AP*C)-3'
著者Sheng, J, Hassan, A.E, Zhang, W, Huang, Z.
登録日2009-05-13
公開日2009-08-18
最終更新日2024-02-21
実験手法X-RAY DIFFRACTION (1.57 Å)
主引用文献High fidelity of base pairing by 2-selenothymidine in DNA.
J.Am.Chem.Soc., 132, 2010
6VYH
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BU of 6vyh by Molmil
Cryo-EM structure of SLC40/ferroportin in complex with Fab
分子名称: 11F9 heavy-chain, 11F9 light-chain, COBALT (II) ION, ...
著者Shen, J, Ren, Z, Pan, Y, Gao, S, Yan, N, Zhou, M.
登録日2020-02-26
公開日2020-11-11
最終更新日2022-09-28
実験手法ELECTRON MICROSCOPY (3 Å)
主引用文献Structural basis of ion transport and inhibition in ferroportin.
Nat Commun, 11, 2020
3IKI
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5-SMe-dU containing DNA octamer
分子名称: 5'-D(*GP*(UMS)P*GP*(US2)P*AP*CP*AP*C)-3', MAGNESIUM ION
著者Sheng, J, Hassan, A.E.A, Zhang, W, Gan, J, Huang, Z.
登録日2009-08-05
公開日2010-03-09
最終更新日2023-09-06
実験手法X-RAY DIFFRACTION (1.38 Å)
主引用文献Hydrogen bond formation between the naturally modified nucleobase and phosphate backbone.
Nucleic Acids Res., 40, 2012
3IJN
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5-SeMe-Cytidine modified DNA 8mer
分子名称: 5'-D(*GP*(UMS)P*GP*TP*AP*(5SE)P*AP*C)-3'
著者Sheng, J, Zhang, W, Hassan, A.E.A, Gan, J, Huang, Z.
登録日2009-08-04
公開日2009-10-06
最終更新日2023-09-06
実験手法X-RAY DIFFRACTION (1.8 Å)
主引用文献5-SeMe-Cytidine modified DNA 8mer
TO BE PUBLISHED
4HHV
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Crystal structure of ceramide transfer protein pleckstrin homology domain
分子名称: ACETATE ION, CHLORIDE ION, Collagen type IV alpha-3-binding protein, ...
著者Prashek, J, Truong, T, Yao, X.
登録日2012-10-10
公開日2013-11-27
最終更新日2024-02-28
実験手法X-RAY DIFFRACTION (1.75 Å)
主引用文献Crystal Structure of the Pleckstrin Homology Domain from the Ceramide Transfer Protein: Implications for Conformational Change upon Ligand Binding.
Plos One, 8, 2013
4HNJ
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BU of 4hnj by Molmil
Crystallographic structure of BCL-xL domain-swapped dimer in complex with PUMA BH3 peptide at 2.9A resolution
分子名称: Bcl-2-binding component 3, Bcl-2-like protein 1
著者Fisher, J.C, Yun, M.K, White, S.W.
登録日2012-10-19
公開日2013-01-23
最終更新日2023-09-20
実験手法X-RAY DIFFRACTION (2.9 Å)
主引用文献PUMA binding induces partial unfolding within BCL-xL to disrupt p53 binding and promote apoptosis.
Nat.Chem.Biol., 9, 2013
5E36
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BU of 5e36 by Molmil
Crystal structure of 2'-propargyl-modified DNA 8mer-duplex
分子名称: DNA (5'-D(*GP*(OMU)P*GP*TP*(5JO)P*CP*AP*C)-3'), MAGNESIUM ION
著者Sheng, J, Gan, J.
登録日2015-10-02
公開日2015-12-02
最終更新日2023-09-27
実験手法X-RAY DIFFRACTION (1.6 Å)
主引用文献Crystal structure of 2'-propargyl-modified DNA 8mer-duplex
To Be Published
5JJD
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BU of 5jjd by Molmil
crystal structure of the ceramide transfer protein PH and START domain complex
分子名称: Collagen type IV alpha-3-binding protein, DI(HYDROXYETHYL)ETHER, TRIETHYLENE GLYCOL
著者Prashek, J, Bouyain, S, Yao, X.
登録日2016-04-23
公開日2017-07-05
最終更新日2023-09-27
実験手法X-RAY DIFFRACTION (2.403 Å)
主引用文献Interaction between the PH and START domains of ceramide transfer protein competes with phosphatidylinositol 4-phosphate binding by the PH domain.
J. Biol. Chem., 292, 2017
3IFF
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BU of 3iff by Molmil
2'-SeMe-A modified DNA decamer
分子名称: DNA (5'-D(*GP*TP*AP*CP*GP*CP*GP*TP*(XUA)P*C)-3'), MAGNESIUM ION
著者Sheng, J, Gan, J, Salon, J, Huang, Z.
登録日2009-07-24
公開日2009-08-11
最終更新日2023-09-06
実験手法X-RAY DIFFRACTION (1.75 Å)
主引用文献Selenium modification at 2'-position of adenosine for nucleic acid structure studies
To be Published
3ZQ6
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BU of 3zq6 by Molmil
ADP-ALF4 COMPLEX OF M. THERM. TRC40
分子名称: ADENOSINE-5'-DIPHOSPHATE, MAGNESIUM ION, POTASSIUM ION, ...
著者Sherrill, J, Mariappan, M, Dominik, P, Hegde, R.S, Keenan, R.J.
登録日2011-06-08
公開日2011-06-22
最終更新日2023-12-20
実験手法X-RAY DIFFRACTION (2.107 Å)
主引用文献A Conserved Archaeal Pathway for Tail-Anchored Membrane Protein Insertion.
Traffic, 12, 2011
4IQS
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BU of 4iqs by Molmil
RNA 8mer duplex modified with 4-Se-Uridine
分子名称: RNA (5'-R(*GP*UP*GP*(S5)P*AP*CP*AP*C)-3')
著者Sheng, J, Gan, J, Soares, A, Huang, Z.
登録日2013-01-13
公開日2013-12-25
最終更新日2024-02-28
実験手法X-RAY DIFFRACTION (2.6 Å)
主引用文献Structural insights of non-canonical U*U pair and Hoogsteen interaction probed with Se atom.
Nucleic Acids Res., 41, 2013
3IFI
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BU of 3ifi by Molmil
2'-SeMe-dG modified octamer DNA
分子名称: DNA (5'-D(*GP*TP*(XUG)P*TP*AP*CP*AP*C)-3')
著者Sheng, J, Gan, J, Salon, J, Huang, Z.
登録日2009-07-24
公開日2009-08-11
最終更新日2023-09-06
実験手法X-RAY DIFFRACTION (1.2 Å)
主引用文献Synthesis and crystal structure of 2'-se-modified guanosine containing DNA.
J.Org.Chem., 75, 2010
6WF2
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BU of 6wf2 by Molmil
Crystal structure of mouse SCD1 with a diiron center
分子名称: Acyl-CoA desaturase 1, FE (III) ION, S-{(3R,5R,9R)-1-[(2R,3S,4R,5R)-5-(6-amino-9H-purin-9-yl)-4-hydroxy-3-(phosphonooxy)tetrahydrofuran-2-yl]-3,5,9-trihydroxy-8,8-dimethyl-3,5-dioxido-10,14-dioxo-2,4,6-trioxa-11,15-diaza-3lambda~5~,5lambda~5~-diphosphaheptadecan-17-yl} (9Z)-octadec-9-enethioate (non-preferred name)
著者Shen, J, Zhou, M.
登録日2020-04-03
公開日2020-06-17
最終更新日2023-10-18
実験手法X-RAY DIFFRACTION (3.51 Å)
主引用文献Structure and Mechanism of a Unique Diiron Center in Mammalian Stearoyl-CoA Desaturase.
J.Mol.Biol., 432, 2020
8G3G
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CryoEM structure of yeast recombination mediator Rad52
分子名称: DNA repair and recombination protein RAD52
著者Deveryshetty, J, Basore, K, Rau, M, Fitzpatrick, J.A.J, Antony, E.
登録日2023-02-07
公開日2023-11-15
実験手法ELECTRON MICROSCOPY (3.5 Å)
主引用文献Yeast Rad52 is a homodecamer and possesses BRCA2-like bipartite Rad51 binding modes.
Nat Commun, 14, 2023
5H7P
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BU of 5h7p by Molmil
NMR structure of the Vta1NTD-Did2(176-204) complex
分子名称: Vacuolar protein sorting-associated protein VTA1, Vacuolar protein-sorting-associated protein 46
著者Shen, J, Yang, Z, Wild, C.J.
登録日2016-11-20
公開日2016-12-21
最終更新日2024-05-15
実験手法SOLUTION NMR
主引用文献NMR studies on the interactions between yeast Vta1 and Did2 during the multivesicular bodies sorting pathway
Sci Rep, 6, 2016
4MSR
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RNA 10mer duplex with six 2'-5'-linkages
分子名称: RNA 10mer duplex with six 2'-5'-linkages, STRONTIUM ION
著者Sheng, J, Li, L, Engelhart, A.E, Gan, J, Wang, J, Szostak, J.W.
登録日2013-09-18
公開日2014-02-12
最終更新日2024-02-28
実験手法X-RAY DIFFRACTION (1.2 Å)
主引用文献Structural insights into the effects of 2'-5' linkages on the RNA duplex.
Proc.Natl.Acad.Sci.USA, 111, 2014
3S49
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RNA crystal structure with 2-Se-uridine modification
分子名称: POTASSIUM ION, RNA (5'-R(*GP*UP*AP*UP*AP*(RUS)P*AP*C)-3')
著者Sheng, J, Gan, J, Sun, H, Hassan, A.E.H, Jiang, S, Huang, Z.
登録日2011-05-19
公開日2011-06-29
最終更新日2023-09-13
実験手法X-RAY DIFFRACTION (2.3 Å)
主引用文献Higher Specificity of RNA Base Pairing with 2-Selenouridine
To be Published
4MS9
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Native RNA-10mer Structure: ccggcgccgg
分子名称: Native RNA duplex 10mer, STRONTIUM ION
著者Sheng, J, Li, L, Engelhart, A.E, Gan, J, Wang, J, Szostak, J.W.
登録日2013-09-18
公開日2014-02-12
最終更新日2024-02-28
実験手法X-RAY DIFFRACTION (1.32 Å)
主引用文献Structural insights into the effects of 2'-5' linkages on the RNA duplex.
Proc.Natl.Acad.Sci.USA, 111, 2014

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