Loading
PDBj
MenuPDBj@FacebookPDBj@X(formerly Twitter)PDBj@BlueSkyPDBj@YouTubewwPDB FoundationwwPDBDonate
RCSB PDBPDBeBMRBAdv. SearchSearch help
PDB: 43 results

4F7V
DownloadVisualize
BU of 4f7v by Molmil
Crystal structure of E. coli HPPK in complex with bisubstrate analogue inhibitor J1D (HP26)
Descriptor: 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase, 5'-{[2-({N-[(2-amino-7,7-dimethyl-4-oxo-3,4,7,8-tetrahydropteridin-6-yl)carbonyl]glycyl}amino)ethyl]sulfonyl}-5'-deoxyadenosine
Authors:Shaw, G, Shi, G, Ji, X.
Deposit date:2012-05-16
Release date:2012-07-11
Last modified:2023-09-13
Method:X-RAY DIFFRACTION (1.73 Å)
Cite:Bisubstrate analog inhibitors of 6-hydroxymethyl-7,8-dihydropterin pyrophosphokinase: New lead exhibits a distinct binding mode.
Bioorg.Med.Chem., 20, 2012
2F09
DownloadVisualize
BU of 2f09 by Molmil
Solution Structure of the gene product of E. coli gene ydhA
Descriptor: Hypothetical protein ydhA
Authors:Shaw, G.S, Revington, M.J, Ontario Centre for Structural Proteomics (OCSP)
Deposit date:2005-11-12
Release date:2005-12-13
Last modified:2024-10-30
Method:SOLUTION NMR
Cite:The solution structure of the Escherichia coli gene product ydhA.
To be Published
3UDE
DownloadVisualize
BU of 3ude by Molmil
Crystal structure of E. coli HPPK in complex with bisubstrate analogue inhibitor J1B
Descriptor: 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase, 5'-S-[1-(2-{[(2-amino-7,7-dimethyl-4-oxo-3,4,7,8-tetrahydropteridin-6-yl)methyl]amino}ethyl)piperidin-4-yl]-5'-thioadenosine, ACETATE ION
Authors:Shaw, G, Shi, G, Ji, X.
Deposit date:2011-10-28
Release date:2012-01-04
Last modified:2023-09-13
Method:X-RAY DIFFRACTION (1.881 Å)
Cite:Bisubstrate analogue inhibitors of 6-hydroxymethyl-7,8-dihydropterin pyrophosphokinase: New design with improved properties.
Bioorg.Med.Chem., 20, 2012
1PON
DownloadVisualize
BU of 1pon by Molmil
SITE III-SITE IV TROPONIN C HETERODIMER, NMR
Descriptor: TROPONIN C
Authors:Shaw, G.S, Sykes, B.D.
Deposit date:1996-04-02
Release date:1996-11-08
Last modified:2024-10-09
Method:SOLUTION NMR
Cite:NMR solution structure of a synthetic troponin C heterodimeric domain.
Biochemistry, 35, 1996
1CTD
DownloadVisualize
BU of 1ctd by Molmil
DETERMINATION OF THE SOLUTION STRUCTURE OF A SYNTHETIC TWO-SITE CALCIUM-BINDING HOMODIMERIC PROTEIN DOMAIN BY NMR SPECTROSCOPY
Descriptor: CALCIUM ION, TROPONIN C SITE III - SITE III HOMODIMER
Authors:Shaw, G.S, Sykes, B.D.
Deposit date:1992-11-12
Release date:1993-10-31
Last modified:2024-10-23
Method:SOLUTION NMR
Cite:Determination of the solution structure of a synthetic two-site calcium-binding homodimeric protein domain by NMR spectroscopy.
Biochemistry, 31, 1992
1CTA
DownloadVisualize
BU of 1cta by Molmil
DETERMINATION OF THE SOLUTION STRUCTURE OF A SYNTHETIC TWO-SITE CALCIUM-BINDING HOMODIMERIC PROTEIN DOMAIN BY NMR SPECTROSCOPY
Descriptor: CALCIUM ION, TROPONIN C SITE III - SITE III HOMODIMER
Authors:Shaw, G.S, Sykes, B.D.
Deposit date:1992-11-12
Release date:1993-10-31
Last modified:2024-10-23
Method:SOLUTION NMR
Cite:Determination of the solution structure of a synthetic two-site calcium-binding homodimeric protein domain by NMR spectroscopy.
Biochemistry, 31, 1992
2JPF
DownloadVisualize
BU of 2jpf by Molmil
Bpp3783_115-220
Descriptor: Hypothetical protein
Authors:Shaw, G.S, Revington, M.J, Savichenko, A, Arrowsmith, C.H, Ontario Centre for Structural Proteomics (OCSP)
Deposit date:2007-05-10
Release date:2008-05-20
Last modified:2023-12-20
Method:SOLUTION NMR
Cite:Bpp3783_115-220
To be Published
3UD5
DownloadVisualize
BU of 3ud5 by Molmil
Crystal structure of E. coli HPPK in complex with bisubstrate analogue inhibitor J1A
Descriptor: 1,2-ETHANEDIOL, 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase, 5'-S-[1-(2-{[(2-amino-4-oxo-3,4-dihydropteridin-6-yl)methyl]amino}ethyl)piperidin-4-yl]-5'-thioadenosine
Authors:Shaw, G, Shi, G, Ji, X.
Deposit date:2011-10-27
Release date:2012-01-04
Last modified:2023-09-13
Method:X-RAY DIFFRACTION (2 Å)
Cite:Bisubstrate analogue inhibitors of 6-hydroxymethyl-7,8-dihydropterin pyrophosphokinase: New design with improved properties.
Bioorg.Med.Chem., 20, 2012
3UDV
DownloadVisualize
BU of 3udv by Molmil
Crystal structure of E. coli HPPK in complex with bisubstrate analogue inhibitor J1C
Descriptor: 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase, 5'-S-[1-(2-{[(2-amino-7,7-dimethyl-4-oxo-3,4,7,8-tetrahydropteridin-6-yl)carbonyl]amino}ethyl)piperidin-4-yl]-5'-thioadenosine, ACETATE ION
Authors:Shaw, G, Shi, G, Ji, X.
Deposit date:2011-10-28
Release date:2012-01-04
Last modified:2023-09-13
Method:X-RAY DIFFRACTION (1.88 Å)
Cite:Bisubstrate analogue inhibitors of 6-hydroxymethyl-7,8-dihydropterin pyrophosphokinase: New design with improved properties.
Bioorg.Med.Chem., 20, 2012
9C5E
DownloadVisualize
BU of 9c5e by Molmil
Covalent Complex Between Parkin Catalytic (Rcat) Domain and Ubiquitin
Descriptor: E3 ubiquitin-protein ligase parkin, Polyubiquitin-B, ZINC ION
Authors:Connelly, E.M, Rintala-Dempsey, A.C, Gundogdu, M, Freeman, E.A, Koszela, J, Aguirre, J.D, Zhu, G, Kamarainen, O, Tadayon, R, Walden, H, Shaw, G.S.
Deposit date:2024-06-06
Release date:2024-08-14
Last modified:2024-10-09
Method:SOLUTION NMR
Cite:Capturing the catalytic intermediates of parkin ubiquitination.
Proc.Natl.Acad.Sci.USA, 121, 2024
2M9Y
DownloadVisualize
BU of 2m9y by Molmil
Solution Structure of the Catalytic Domain of HHARI
Descriptor: E3 ubiquitin-protein ligase ARIH1, ZINC ION
Authors:Mercier, P, Spratt, D.E, Shaw, G.S.
Deposit date:2013-06-24
Release date:2013-11-13
Last modified:2024-05-15
Method:SOLUTION NMR
Cite:Structure of the HHARI catalytic domain shows glimpses of a HECT E3 ligase.
Plos One, 8, 2013
1SX1
DownloadVisualize
BU of 1sx1 by Molmil
Solution NMR Structure and X-ray Absorption Analysis of the C-Terminal Zinc-Binding Domain of the SecA ATPase
Descriptor: SecA, ZINC ION
Authors:Dempsey, B.R, Wrona, M, Moulin, J.M, Gloor, G.B, Jalilehvand, F, Lajoie, G, Shaw, G.S, Shilton, B.H.
Deposit date:2004-03-30
Release date:2004-07-06
Last modified:2024-05-22
Method:SOLUTION NMR
Cite:Solution NMR Structure and X-ray Absorption Analysis of the C-Terminal Zinc-Binding Domain of the SecA ATPase.
Biochemistry, 43, 2004
1SX0
DownloadVisualize
BU of 1sx0 by Molmil
Solution NMR Structure and X-Ray Absorption Analysis of the C-Terminal Zinc-Binding Domain of the SecA ATPase
Descriptor: SecA
Authors:Dempsey, B.R, Wrona, M, Moulin, J.M, Gloor, G.B, Jalilehvand, F, Lajoie, G, Shaw, G.S, Shilton, B.H.
Deposit date:2004-03-30
Release date:2004-07-06
Last modified:2024-05-22
Method:SOLUTION NMR
Cite:Solution NMR Structure and X-ray Absorption Analysis of the C-Terminal Zinc-Binding Domain of the SecA ATPase.
Biochemistry, 43, 2004
6N13
DownloadVisualize
BU of 6n13 by Molmil
UbcH7-Ub Complex with R0RBR Parkin and phosphoubiquitin
Descriptor: E3 ubiquitin-protein ligase parkin, Ubiquitin-conjugating enzyme E2 L3, ZINC ION, ...
Authors:Condos, T.E.C, Dunkerley, K.M, Freeman, E.A, Barber, K.R, Aguirre, J.D, Chaugule, V.K, Xiao, Y, Konermann, L, Walden, H, Shaw, G.S.
Deposit date:2018-11-08
Release date:2018-11-28
Last modified:2024-11-13
Method:SOLUTION NMR
Cite:Synergistic recruitment of UbcH7~Ub and phosphorylated Ubl domain triggers parkin activation.
EMBO J., 37, 2018
7JOF
DownloadVisualize
BU of 7jof by Molmil
Calcium-bound C2A Domain from Human Dysferlin
Descriptor: CALCIUM ION, Isoform 6 of Dysferlin
Authors:Tadayon, R, Wang, Y, Santamaria, L, Mercier, P, Forristal, C, Shaw, G.S.
Deposit date:2020-08-06
Release date:2021-06-16
Last modified:2023-10-18
Method:X-RAY DIFFRACTION (2 Å)
Cite:Calcium binds and rigidifies the dysferlin C2A domain in a tightly coupled manner.
Biochem.J., 478, 2021
7K6B
DownloadVisualize
BU of 7k6b by Molmil
Solution Structure of the Dysferlin C2A Domain in its Calcium-free State
Descriptor: Isoform 15 of Dysferlin
Authors:Wang, Y, Mercier, P, Santamaria, L, Shaw, G.S.
Deposit date:2020-09-19
Release date:2021-01-27
Last modified:2024-05-15
Method:SOLUTION NMR
Cite:Calcium binds and rigidifies the dysferlin C2A domain in a tightly coupled manner.
Biochem.J., 478, 2021
7KRB
DownloadVisualize
BU of 7krb by Molmil
Solution Structure of the Dysferlin C2A Domain in its Calcium-bound State
Descriptor: Isoform 15 of Dysferlin
Authors:Wang, Y, Mercier, P, Santamaria, L, Shaw, G.S.
Deposit date:2020-11-19
Release date:2021-01-27
Last modified:2024-05-01
Method:SOLUTION NMR
Cite:Calcium binds and rigidifies the dysferlin C2A domain in a tightly coupled manner.
Biochem.J., 478, 2021
2NUE
DownloadVisualize
BU of 2nue by Molmil
Crystal structure of RNase III from Aquifex aeolicus complexed with ds-RNA at 2.9-Angstrom Resolution
Descriptor: 46-MER, Ribonuclease III
Authors:Gan, J.H, Shaw, G, Tropea, J.E, Waugh, D.S, Court, D.L, Ji, X.
Deposit date:2006-11-09
Release date:2007-11-20
Last modified:2023-08-30
Method:X-RAY DIFFRACTION (2.9 Å)
Cite:A stepwise model for double-stranded RNA processing by ribonuclease III.
Mol.Microbiol., 67, 2007
2PCX
DownloadVisualize
BU of 2pcx by Molmil
Crystal structure of p53DBD(R282Q) at 1.54-angstrom Resolution
Descriptor: Cellular tumor antigen p53, ZINC ION
Authors:Tu, C, Shaw, G, Ji, X.
Deposit date:2007-03-30
Release date:2008-04-08
Last modified:2023-08-30
Method:X-RAY DIFFRACTION (1.54 Å)
Cite:Impact of low-frequency hotspot mutation R282Q on the structure of p53 DNA-binding domain as revealed by crystallography at 1.54 angstroms resolution.
Acta Crystallogr.,Sect.D, 64, 2008
2NUG
DownloadVisualize
BU of 2nug by Molmil
Crystal structure of RNase III from Aquifex aeolicus complexed with ds-RNA at 1.7-Angstrom Resolution
Descriptor: 5'-R(P*AP*AP*GP*GP*UP*CP*AP*UP*UP*CP*G)-3', 5'-R(P*AP*GP*UP*GP*GP*CP*CP*UP*UP*GP*C)-3', MAGNESIUM ION, ...
Authors:Gan, J.H, Shaw, G, Tropea, J.E, Waugh, D.S, Court, D.L, Ji, X.
Deposit date:2006-11-09
Release date:2007-11-20
Last modified:2023-08-30
Method:X-RAY DIFFRACTION (1.7 Å)
Cite:A stepwise model for double-stranded RNA processing by ribonuclease III.
Mol.Microbiol., 67, 2007
5C23
DownloadVisualize
BU of 5c23 by Molmil
Parkin (S65DUblR0RBR)
Descriptor: CHLORIDE ION, E3 ubiquitin-protein ligase parkin, GLYCEROL, ...
Authors:Kumar, A, Aguirre, J.D, Condos, T.E.C, Martinez-Torres, R.J, Chaugule, V.K, Toth, R, Sundaramoorthy, R, Mercier, P, Knebel, A, Spratt, D.E, Barber, K.R, Shaw, G.S, Walden, H.
Deposit date:2015-06-15
Release date:2015-07-29
Last modified:2024-01-10
Method:X-RAY DIFFRACTION (2.37 Å)
Cite:Disruption of the autoinhibited state primes the E3 ligase parkin for activation and catalysis.
Embo J., 34, 2015
2NUF
DownloadVisualize
BU of 2nuf by Molmil
Crystal structure of RNase III from Aquifex aeolicus complexed with ds-RNA at 2.5-Angstrom Resolution
Descriptor: 28-MER, MAGNESIUM ION, Ribonuclease III
Authors:Gan, J.H, Shaw, G, Tropea, J.E, Waugh, D.S, Court, D.L, Ji, X.
Deposit date:2006-11-09
Release date:2007-11-20
Last modified:2023-08-30
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:A stepwise model for double-stranded RNA processing by ribonuclease III.
Mol.Microbiol., 67, 2007
5C1Z
DownloadVisualize
BU of 5c1z by Molmil
Parkin (UblR0RBR)
Descriptor: CHLORIDE ION, E3 ubiquitin-protein ligase parkin, GLYCEROL, ...
Authors:kumar, A, Aguirre, J.D, Condos, T.E.C, Martinez-Torres, R.J, Chaugule, V.K, Toth, R, Sundaramoorthy, R, Mercier, P, Knebel, A, Spratt, D.E, Barber, K.R, Shaw, G.S, Walden, H.
Deposit date:2015-06-15
Release date:2015-07-29
Last modified:2024-01-10
Method:X-RAY DIFFRACTION (1.79 Å)
Cite:Disruption of the autoinhibited state primes the E3 ligase parkin for activation and catalysis.
Embo J., 34, 2015
1MQ1
DownloadVisualize
BU of 1mq1 by Molmil
Ca2+-S100B-TRTK-12 complex
Descriptor: F-actin capping protein alpha-1 subunit, S-100 protein, beta chain
Authors:McClintock, K.A, Shaw, G.S.
Deposit date:2002-09-13
Release date:2002-12-25
Last modified:2024-05-22
Method:SOLUTION NMR
Cite:A novel S100 target conformation is revealed by the solution structure of the Ca2+-S100B-TRTK-12 complex.
J.Biol.Chem., 278, 2003
1UWO
DownloadVisualize
BU of 1uwo by Molmil
CALCIUM FORM OF HUMAN S100B, NMR, 20 STRUCTURES
Descriptor: S100B
Authors:Smith, S.P, Shaw, G.S.
Deposit date:1997-12-05
Release date:1998-06-10
Last modified:2024-05-22
Method:SOLUTION NMR
Cite:A novel calcium-sensitive switch revealed by the structure of human S100B in the calcium-bound form.
Structure, 6, 1998

 

12>

234136

PDB entries from 2025-04-02

PDB statisticsPDBj update infoContact PDBjnumon