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PDB: 47 results

2RQL
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Solution structure of the E. coli ribosome hibernation promoting factor HPF
Descriptor: Probable sigma-54 modulation protein
Authors:Sato, A, Mishima, M.
Deposit date:2009-08-13
Release date:2010-02-02
Last modified:2024-05-29
Method:SOLUTION NMR
Cite:Solution structure of the E. coli ribosome hibernation promoting factor HPF: Implications for the relationship between structure and function.
Biochem.Biophys.Res.Commun., 389, 2009
1BQT
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THREE-DIMENSIONAL STRUCTURE OF HUMAN INSULIN-LIKE GROWTH FACTOR-I (IGF-I) DETERMINED BY 1H-NMR AND DISTANCE GEOMETRY, 6 STRUCTURES
Descriptor: INSULIN-LIKE GROWTH FACTOR-I
Authors:Sato, A, Nishimura, S, Ohkubo, T, Kyogoku, Y, Koyama, S, Kobayashi, M, Yasuda, T, Kobayashi, Y.
Deposit date:1998-08-18
Release date:1999-05-18
Last modified:2024-10-30
Method:SOLUTION NMR
Cite:Three-dimensional structure of human insulin-like growth factor-I (IGF-I) determined by 1H-NMR and distance geometry.
Int.J.Pept.Protein Res., 41, 1993
2RRD
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Structure of HRDC domain from human Bloom syndrome protein, BLM
Descriptor: HRDC domain from Bloom syndrome protein
Authors:Sato, A, Mishima, M, Nagai, A, Kim, S.Y, Ito, Y, Hakoshima, T, Jee, J.G, Kitano, K.
Deposit date:2010-07-19
Release date:2010-09-08
Last modified:2024-05-01
Method:SOLUTION NMR
Cite:Solution structure of the HRDC domain of human Bloom syndrome protein BLM
J.Biochem., 148, 2010
1ID7
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SOLUTION STRUCTURE OF SYR6
Descriptor: SYR6
Authors:Sato, A, Kawaguchi, K, Kimura, K, Tanimura, R, Sone, S.
Deposit date:2001-04-04
Release date:2002-04-10
Last modified:2024-05-29
Method:SOLUTION NMR
Cite:A peptide mimetic of IFN, the first proof of a small peptidic agonist for heterodimeric cytokine receptor
To be Published
1ID6
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SOLUTION STRUCTURES OF SYR6
Descriptor: SYR6
Authors:Sato, A, Kawaguchi, K, Kimura, K, Tanimura, R, Sone, S.
Deposit date:2001-04-04
Release date:2002-04-10
Last modified:2024-05-29
Method:SOLUTION NMR
Cite:A peptide mimetic of IFN, the first proof of a small peptidic agonist for heterodimeric cytokine receptor
To be Published
1X5T
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BU of 1x5t by Molmil
Solution structure of the second RRM domain in splicing factor = 3B
Descriptor: Splicing factor 3B subunit 4
Authors:Sato, A, Kuwasako, K, Muto, Y, Inoue, M, Kigawa, T, Shirouzu, M, Terada, T, Yokoyama, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2005-05-16
Release date:2005-11-16
Last modified:2024-05-29
Method:SOLUTION NMR
Cite:Solution structure of the second RRM domain in splicing factor = 3B
To be Published
1X5S
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Solution structure of RRM domain in A18 hnRNP
Descriptor: Cold-inducible RNA-binding protein
Authors:Sato, A, Muto, Y, Inoue, M, Kigawa, T, Shirouzu, M, Terada, T, Yokoyama, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2005-05-16
Release date:2005-11-16
Last modified:2024-05-29
Method:SOLUTION NMR
Cite:Solution structure of RRM domain in A18 hnRNP
To be Published
3AG5
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Crystal Structure of Pantothenate Synthetase from Staphylococcus aureus
Descriptor: Pantothenate synthetase
Authors:Satoh, A, Konishi, S, Tamura, H, Stickland, H.G, Whitney, H.M, Smith, A.G, Matsumura, H, Inoue, T.
Deposit date:2010-03-19
Release date:2010-07-21
Last modified:2024-03-13
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:Substrate-induced closing of the active site revealed by the crystal structure of pantothenate synthetase from Staphylococcus aureus.
Biochemistry, 49, 2010
3AG6
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Crystal Structure of Pantothenate Synthetase from Staphylococcus aureus in complex with pantoyl adenylate
Descriptor: ACETIC ACID, PANTOYL ADENYLATE, Pantothenate synthetase, ...
Authors:Satoh, A, Konishi, S, Tamura, H, Stickland, H.G, Whitney, H.M, Smith, A.G, Matsumura, H, Inoue, T.
Deposit date:2010-03-19
Release date:2010-07-21
Last modified:2024-03-13
Method:X-RAY DIFFRACTION (1.85 Å)
Cite:Substrate-induced closing of the active site revealed by the crystal structure of pantothenate synthetase from Staphylococcus aureus.
Biochemistry, 49, 2010
1UDY
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BU of 1udy by Molmil
Medium-Chain Acyl-CoA Dehydrogenase with 3-Thiaoctanoyl-CoA
Descriptor: 3-THIAOCTANOYL-COENZYME A, Acyl-CoA dehydrogenase, medium-chain specific, ...
Authors:Satoh, A, Nakajima, Y, Miyahara, I, Hirotsu, K, Tanaka, T, Nishina, Y, Shiga, K, Tamaoki, H, Setoyama, C, Miura, R.
Deposit date:2003-05-07
Release date:2003-12-09
Last modified:2023-12-27
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:Structure of the transition state analog of medium-chain acyl-CoA dehydrogenase. Crystallographic and molecular orbital studies on the charge-transfer complex of medium-chain acyl-CoA dehydrogenase with 3-thiaoctanoyl-CoA
J.BIOCHEM.(TOKYO), 134, 2003
1JMX
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crystal structure of a quinohemoprotein amine dehydrogenase from pseudomonas putida
Descriptor: Amine Dehydrogenase, HEME C, NICKEL (II) ION
Authors:Satoh, A, Miyahara, I, Hirotsu, K.
Deposit date:2001-07-20
Release date:2002-01-16
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Crystal structure of quinohemoprotein amine dehydrogenase from Pseudomonas putida. Identification of a novel quinone cofactor encaged by multiple thioether cross-bridges.
J.Biol.Chem., 277, 2002
1JMZ
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crystal structure of a quinohemoprotein amine dehydrogenase from pseudomonas putida with inhibitor
Descriptor: Amine Dehydrogenase, HEME C, NICKEL (II) ION, ...
Authors:Satoh, A, Miyahara, I, Hirotsu, K.
Deposit date:2001-07-20
Release date:2002-01-16
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2 Å)
Cite:Crystal structure of quinohemoprotein amine dehydrogenase from Pseudomonas putida. Identification of a novel quinone cofactor encaged by multiple thioether cross-bridges.
J.Biol.Chem., 277, 2002
1QR3
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Structure of porcine pancreatic elastase in complex with FR901277, a novel macrocyclic inhibitor of elastases at 1.6 angstrom resolution
Descriptor: CALCIUM ION, Chymotrypsin-like elastase family member 1, FR901277 Inhibitor, ...
Authors:Nakanishi, I, Kinoshita, T, Sato, A, Tada, T.
Deposit date:1999-06-18
Release date:2000-06-21
Last modified:2023-11-15
Method:X-RAY DIFFRACTION (1.6 Å)
Cite:Structure of porcine pancreatic elastase complexed with FR901277, a novel macrocyclic inhibitor of elastases, at 1.6 A resolution.
Biopolymers, 53, 2000
8WO8
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BU of 8wo8 by Molmil
Crystal Structure of an RNA-binding protein, FAU-1, from Pyrococcus furiosus
Descriptor: Probable ribonuclease FAU-1, RNA (5'-R(P*AP*UP*A)-3')
Authors:Kawai, G, Okada, K, Baba, S, Sato, A, Sakamoto, T, Kanai, A.
Deposit date:2023-10-06
Release date:2024-02-14
Last modified:2024-06-19
Method:X-RAY DIFFRACTION (2.78 Å)
Cite:Homo-trimeric structure of the ribonuclease for rRNA processing, FAU-1, from Pyrococcus furiosus.
J.Biochem., 175, 2024
5GVQ
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BU of 5gvq by Molmil
Solution structure of the first RRM domain of human spliceosomal protein SF3b49
Descriptor: Splicing factor 3B subunit 4
Authors:Kuwasako, K, Nameki, N, Tsuda, K, Takahashi, M, Sato, A, Tochio, N, Inoue, M, Terada, T, Kigawa, T, Kobayashi, N, Shirouzu, M, Ito, T, Sakamoto, T, Wakamatsu, K, Guntert, P, Takahashi, S, Yokoyama, S, Muto, Y, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2016-09-06
Release date:2017-04-12
Last modified:2024-05-01
Method:SOLUTION NMR
Cite:Solution structure of the first RNA recognition motif domain of human spliceosomal protein SF3b49 and its mode of interaction with a SF3b145 fragment.
Protein Sci., 26, 2017
3AJI
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BU of 3aji by Molmil
Structure of Gankyrin-S6ATPase photo-cross-linked site-specifically, and incoporated by genetic code expansion
Descriptor: 26S proteasome non-ATPase regulatory subunit 10, Proteasome (Prosome, macropain) 26S subunit, ...
Authors:Sato, S, Mimasu, S, Sato, A, Hino, N, Sakamoto, K, Umehara, T, Yokoyama, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2010-06-07
Release date:2010-12-22
Last modified:2023-11-15
Method:X-RAY DIFFRACTION (2.05 Å)
Cite:Crystallographic study of a site-specifically cross-linked protein complex with a genetically incorporated photoreactive amino acid
Biochemistry, 50, 2011
3ABG
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BU of 3abg by Molmil
X-ray Crystal Analysis of Bilirubin Oxidase from Myrothecium verrucaria at 2.3 angstrom Resolution using a Twin Crystal
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, Bilirubin oxidase, COPPER (II) ION, ...
Authors:Mizutani, K, Toyoda, M, Sagara, K, Takahashi, N, Sato, A, Kamitaka, Y, Tsujimura, S, Nakanishi, Y, Sugiura, T, Yamaguchi, S, Kano, K, Mikami, B.
Deposit date:2009-12-10
Release date:2010-08-18
Last modified:2023-07-26
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:X-ray analysis of bilirubin oxidase from Myrothecium verrucaria at 2.3 A resolution using a twinned crystal
Acta Crystallogr.,Sect.F, 66, 2010
1QPU
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BU of 1qpu by Molmil
SOLUTION STRUCTURE OF OXIDIZED ESCHERICHIA COLI CYTOCHROME B562
Descriptor: CYTOCHROME B562, PROTOPORPHYRIN IX CONTAINING FE
Authors:Arnesano, F, Banci, L, Bertini, I, Faraone-Mennella, J, Rosato, A, Barker, P.D, Fersht, A.R.
Deposit date:1999-05-30
Release date:1999-06-02
Last modified:2024-05-22
Method:SOLUTION NMR
Cite:The solution structure of oxidized Escherichia coli cytochrome b562.
Biochemistry, 38, 1999
5T7L
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BU of 5t7l by Molmil
Pt(II)-mediated copper-dependent interactions between ATOX1 and MNK1
Descriptor: COPPER (II) ION, Copper transport protein ATOX1, Copper-transporting ATPase 1, ...
Authors:Caliandro, R, Mirabelli, V, Caliandro, R, Rosato, A, Lasorsa, A, Galliani, A, Arnesano, F, Natile, G.
Deposit date:2016-09-05
Release date:2016-10-12
Last modified:2024-01-17
Method:X-RAY DIFFRACTION (2.83 Å)
Cite:Mechanistic and Structural Basis for Inhibition of Copper Trafficking by Platinum Anticancer Drugs.
J.Am.Chem.Soc., 141, 2019
2G9O
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Solution structure of the apo form of the third metal-binding domain of ATP7A protein (Menkes Disease protein)
Descriptor: Copper-transporting ATPase 1
Authors:Banci, L, Bertini, I, Cantini, F, DellaMalva, N, Rosato, A, Herrmann, T, Wuthrich, K, Structural Proteomics in Europe (SPINE)
Deposit date:2006-03-07
Release date:2006-08-01
Last modified:2024-05-29
Method:SOLUTION NMR
Cite:Solution structure and intermolecular interactions of the third metal-binding domain of ATP7A, the Menkes disease protein.
J.Biol.Chem., 281, 2006
2GGP
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Solution structure of the Atx1-Cu(I)-Ccc2a complex
Descriptor: COPPER (I) ION, Metal homeostasis factor ATX1, Probable copper-transporting ATPase
Authors:Banci, L, Bertini, I, Cantini, F, Felli, I.C, Gonnelli, L, Hadjiliadis, N, Pierattelli, R, Rosato, A, Voulgaris, P, Structural Proteomics in Europe (SPINE)
Deposit date:2006-03-24
Release date:2006-08-08
Last modified:2024-05-29
Method:SOLUTION NMR
Cite:The Atx1-Ccc2 complex is a metal-mediated protein-protein interaction.
Nat.Chem.Biol., 2, 2006
2GA7
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BU of 2ga7 by Molmil
Solution structure of the copper(I) form of the third metal-binding domain of ATP7A protein (menkes disease protein)
Descriptor: COPPER (I) ION, Copper-transporting ATPase 1
Authors:Banci, L, Bertini, I, Cantini, F, DellaMalva, N, Rosato, A, Herrmann, T, Wuthrich, K, Structural Proteomics in Europe (SPINE)
Deposit date:2006-03-08
Release date:2006-08-01
Last modified:2024-05-29
Method:SOLUTION NMR
Cite:Solution structure and intermolecular interactions of the third metal-binding domain of ATP7A, the Menkes disease protein.
J.Biol.Chem., 281, 2006
2K1R
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The solution NMR structure of the complex between MNK1 and HAH1 mediated by Cu(I)
Descriptor: COPPER (II) ION, Copper transport protein ATOX1, Copper-transporting ATPase 1
Authors:Bertini, I, Banci, L.C, Felli, I.C, Pavelkova, A, Rosato, A, Structural Proteomics in Europe (SPINE)
Deposit date:2008-03-14
Release date:2009-03-31
Last modified:2024-10-16
Method:SOLUTION NMR
Cite:The solution structure of the copper(I)-mediated complex between the first soluble domain of the Menkes protein and the metallochaperone HAH1.
To be Published
2ZOC
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BU of 2zoc by Molmil
Crystal structure of recombinant human annexin IV
Descriptor: Annexin A4, CALCIUM ION
Authors:Konno, M, Kaneko-Kanzaki, Y, Fushinobu-Okushi, N, Mochizuki, K, Uchikaw, E, Satoh, A, Aikawa, K.
Deposit date:2008-05-08
Release date:2009-04-28
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (2 Å)
Cite:The comparison of the loop structure of membrane binding sites between human and bovine annexin IV
To be Published
1AQA
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BU of 1aqa by Molmil
SOLUTION STRUCTURE OF REDUCED MICROSOMAL RAT CYTOCHROME B5, NMR, MINIMIZED AVERAGE STRUCTURE
Descriptor: CYTOCHROME B5, PROTOPORPHYRIN IX CONTAINING FE
Authors:Banci, L, Bertini, I, Ferroni, F, Rosato, A.
Deposit date:1997-07-28
Release date:1997-09-17
Last modified:2024-05-22
Method:SOLUTION NMR
Cite:Solution structure of reduced microsomal rat cytochrome b5.
Eur.J.Biochem., 249, 1997

 

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