Loading
PDBj
MenuPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help
PDB: 2559 results

3EH4
DownloadVisualize
BU of 3eh4 by Molmil
Structure of the reduced form of cytochrome ba3 oxidase from Thermus thermophilus
Descriptor: COPPER (I) ION, Cytochrome c oxidase polypeptide 2A, Cytochrome c oxidase subunit 1, ...
Authors:Liu, B, Chen, Y, Doukov, T, Soltis, S.M, Stout, D, Fee, J.A.
Deposit date:2008-09-11
Release date:2009-04-21
Last modified:2023-08-30
Method:X-RAY DIFFRACTION (2.9 Å)
Cite:Combined microspectrophotometric and crystallographic examination of chemically reduced and X-ray radiation-reduced forms of cytochrome ba3 oxidase from Thermus thermophilus: structure of the reduced form of the enzyme.
Biochemistry, 48, 2009
6KL6
DownloadVisualize
BU of 6kl6 by Molmil
Crystal structure of MERS-CoV N-NTD complexed with 5-Benzyloxygramine
Descriptor: N,N-dimethyl-1-(5-phenylmethoxy-1H-indol-3-yl)methanamine, Nucleoprotein
Authors:Hou, M.H, Lin, S.M, Wang, Y.S, Hsu, J.N.
Deposit date:2019-07-29
Release date:2020-03-25
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (2.77 Å)
Cite:Structure-Based Stabilization of Non-native Protein-Protein Interactions of Coronavirus Nucleocapsid Proteins in Antiviral Drug Design.
J.Med.Chem., 63, 2020
3RJ6
DownloadVisualize
BU of 3rj6 by Molmil
Crystal Structure of Horse heart ferric myoglobin; K45E/K63E/K96E mutant
Descriptor: Myoglobin, PROTOPORPHYRIN IX CONTAINING FE, SULFATE ION
Authors:Smith, S.M, Rosenzweig, A.C.
Deposit date:2011-04-15
Release date:2012-05-09
Last modified:2024-02-28
Method:X-RAY DIFFRACTION (1.23 Å)
Cite:Charge-Disproportionation Symmetry Breaking Creates a Heterodimeric Myoglobin Complex with Enhanced Affinity and Rapid Intracomplex Electron Transfer.
J.Am.Chem.Soc., 138, 2016
3RJN
DownloadVisualize
BU of 3rjn by Molmil
Horse heart myoglobin: D44K/D60K mutant with zinc (II) -deuteroporphyrin dimethyl ester
Descriptor: Myoglobin, SULFATE ION, ZINC(II)-DEUTEROPORPHYRIN DIMETHYLESTER
Authors:Smith, S.M, Rosenzweig, A.C.
Deposit date:2011-04-15
Release date:2012-05-09
Last modified:2024-02-28
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Horse heart myoglobin: D44K/D60K mutant with zinc (II) -deuteroporphyrin dimethyl ester
To be Published
5WNZ
DownloadVisualize
BU of 5wnz by Molmil
DNA polymerase beta substrate complex with incoming 5-FodCTP
Descriptor: 2'-deoxy-5-formylcytidine 5'-(tetrahydrogen triphosphate), CALCIUM ION, CHLORIDE ION, ...
Authors:Schaich, M.A, Smith, M.R, Cloud, A.S, Holloran, S.M, Freudenthal, B.D.
Deposit date:2017-08-01
Release date:2017-09-13
Last modified:2023-10-04
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Structures of a DNA Polymerase Inserting Therapeutic Nucleotide Analogues.
Chem. Res. Toxicol., 30, 2017
6IAI
DownloadVisualize
BU of 6iai by Molmil
StoD is a novel Salmonella Typhi type III secretion system E3 ubiquitin ligase effector
Descriptor: Protein of uncharacterized function (DUF1076)
Authors:McDowell, M.A, Lea, S.M.
Deposit date:2018-11-26
Release date:2019-05-29
Last modified:2024-05-15
Method:X-RAY DIFFRACTION (2.54 Å)
Cite:The S . Typhi effector StoD is an E3/E4 ubiquitin ligase which binds K48- and K63-linked diubiquitin.
Life Sci Alliance, 2, 2019
4KMN
DownloadVisualize
BU of 4kmn by Molmil
Structure of cIAP1-BIR3 and inhibitor
Descriptor: (2S)-N-{(2R)-1-[(2R,4S)-2-{[6,6'-difluoro-3'-({(2R,4S)-4-hydroxy-1-[(2S)-2-{[(2S)-2-(methylamino)propanoyl]amino}butanoyl]pyrrolidin-2-yl}methyl)-1H,1'H-2,2'-biindol-3-yl]methyl}-4-hydroxypyrrolidin-1-yl]-1-oxobutan-2-yl}-2-(methylamino)propanamide, Baculoviral IAP repeat-containing protein 2, PHOSPHATE ION, ...
Authors:Li, X, Wang, J, Condon, S.M, Shi, Y.
Deposit date:2013-05-08
Release date:2014-05-14
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (1.523 Å)
Cite:Structure of cIAP1-BIR3 and inhibitor
To be Published
3O3G
DownloadVisualize
BU of 3o3g by Molmil
T. maritima RNase H2 in complex with nucleic acid substrate and calcium ions
Descriptor: CALCIUM ION, DNA (5'-D(*GP*AP*AP*TP*CP*AP*GP*GP*TP*GP*TP*C)-3'), DNA/RNA (5'-D(*GP*AP*CP*AP*C)-R(P*C)-D(P*TP*GP*AP*TP*TP*C)-3'), ...
Authors:Rychlik, M.P, Chon, H, Cerritelli, S.M, Klimek, P, Crouch, R.J, Nowotny, M.
Deposit date:2010-07-24
Release date:2010-12-08
Last modified:2023-09-06
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Crystal Structures of RNase H2 in Complex with Nucleic Acid Reveal the Mechanism of RNA-DNA Junction Recognition and Cleavage.
Mol.Cell, 40, 2010
6IDL
DownloadVisualize
BU of 6idl by Molmil
Cryo-EM structure of Immature Dengue virus serotype 3 in complex with human antibody 1H10 Fab at pH 5.0 (Class II particle)
Descriptor: Envelope protein, Fab 1H10 heavy chain (V-region), Fab 1H10 light chain (V-region), ...
Authors:Wirawan, M, Fibriansah, G, Ng, T.S, Zhang, Q, Kostyuchenko, V.A, Shi, J, Lok, S.M.
Deposit date:2018-09-10
Release date:2018-12-12
Last modified:2024-03-27
Method:ELECTRON MICROSCOPY (25 Å)
Cite:Mechanism of Enhanced Immature Dengue Virus Attachment to Endosomal Membrane Induced by prM Antibody.
Structure, 27, 2019
3DKZ
DownloadVisualize
BU of 3dkz by Molmil
Crystal structure of the Q7W9W5_BORPA protein from Bordetella parapertussis. Northeast Structural Genomics Consortium target BpR208C.
Descriptor: Thioesterase superfamily protein
Authors:Vorobiev, S.M, Su, M, Seetharaman, J, Wang, D, Ciccosanti, C, Foote, E.L, Mao, L, Xiao, R, Acton, T.B, Montelione, G.T, Hunt, J.F, Tong, L, Northeast Structural Genomics Consortium (NESG)
Deposit date:2008-06-26
Release date:2008-08-26
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:Crystal structure of the Q7W9W5_BORPA protein from Bordetella parapertussis.
To be Published
3DRB
DownloadVisualize
BU of 3drb by Molmil
Crystal structure of Human Brain-type Creatine Kinase
Descriptor: ADENOSINE-5'-DIPHOSPHATE, Creatine kinase B-type, MAGNESIUM ION
Authors:Moon, J.H, Bong, S.M, Hwang, K.Y, Chi, Y.M.
Deposit date:2008-07-11
Release date:2009-03-17
Last modified:2024-03-20
Method:X-RAY DIFFRACTION (2 Å)
Cite:Structural studies of human brain-type creatine kinase complexed with the ADP-Mg2+-NO3- -creatine transition-state analogue complex
Febs Lett., 582, 2008
3DT2
DownloadVisualize
BU of 3dt2 by Molmil
The structure of rat cytosolic PEPCK in complex with oxalate and GTP
Descriptor: GUANOSINE-5'-TRIPHOSPHATE, MANGANESE (II) ION, OXALATE ION, ...
Authors:Sullivan, S.M, Holyoak, T.
Deposit date:2008-07-14
Release date:2008-08-26
Last modified:2024-02-21
Method:X-RAY DIFFRACTION (1.5 Å)
Cite:Enzymes with lid-gated active sites must operate by an induced fit mechanism instead of conformational selection.
Proc.Natl.Acad.Sci.Usa, 105, 2008
6ID6
DownloadVisualize
BU of 6id6 by Molmil
Crystal structure of Rv0731c from Mycobacterium tuberculosis at 1.63 Angstroms.
Descriptor: MAGNESIUM ION, Putative S-adenosyl-L-methionine-dependent methyltransferase Rv0731c, TRIETHYLENE GLYCOL
Authors:Bansia, H, Kalladi, S.M, Nagaraja, V, Ramakumar, S.
Deposit date:2018-09-08
Release date:2019-09-11
Last modified:2024-03-27
Method:X-RAY DIFFRACTION (1.63 Å)
Cite:Crystal structure of Rv0731c from Mycobacterium tuberculosis.
To Be Published
5W94
DownloadVisualize
BU of 5w94 by Molmil
Crystal structure of Scc4 in complex with Scc2n and Ctf19n
Descriptor: Ctf19n, MAU2 chromatid cohesion factor homolog, Sister chromatid cohesion protein 2
Authors:Hinshaw, S.M, Harrison, S.C.
Deposit date:2017-06-22
Release date:2017-10-04
Last modified:2023-10-04
Method:X-RAY DIFFRACTION (3.193 Å)
Cite:The Kinetochore Receptor for the Cohesin Loading Complex.
Cell, 171, 2017
4EMH
DownloadVisualize
BU of 4emh by Molmil
Crystal structure of SpLsm4
Descriptor: Probable U6 snRNA-associated Sm-like protein LSm4
Authors:Jiang, S.M, Wu, D.H, Song, H.W.
Deposit date:2012-04-12
Release date:2012-06-13
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Crystal Structures of Lsm3, Lsm4 and Lsm5/6/7 from Schizosaccharomyces pombe.
Plos One, 7, 2012
3EH3
DownloadVisualize
BU of 3eh3 by Molmil
Structure of the reduced form of cytochrome ba3 oxidase from Thermus thermophilus
Descriptor: COPPER (I) ION, Cytochrome c oxidase polypeptide 2A, Cytochrome c oxidase subunit 1, ...
Authors:Liu, B, Chen, Y, Doukov, T, Soltis, S.M, Stout, D, Fee, J.A.
Deposit date:2008-09-11
Release date:2009-04-21
Last modified:2023-08-30
Method:X-RAY DIFFRACTION (3.1 Å)
Cite:Combined microspectrophotometric and crystallographic examination of chemically reduced and X-ray radiation-reduced forms of cytochrome ba3 oxidase from Thermus thermophilus: structure of the reduced form of the enzyme.
Biochemistry, 48, 2009
6KL2
DownloadVisualize
BU of 6kl2 by Molmil
Structure of the N-terminal domain of Middle East respiratory syndrome coronavirus nucleocapsid protein
Descriptor: Nucleoprotein
Authors:Hou, M.H, Wang, Y.S, Lin, S.M, Hsu, J.N.
Deposit date:2019-07-29
Release date:2020-03-25
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (2.63 Å)
Cite:Structure-Based Stabilization of Non-native Protein-Protein Interactions of Coronavirus Nucleocapsid Proteins in Antiviral Drug Design.
J.Med.Chem., 63, 2020
6HEZ
DownloadVisualize
BU of 6hez by Molmil
M tuberculosis DprE1 in complex with BTZ043
Descriptor: 8-(hydroxyamino)-2-[(2S)-2-methyl-1,4-dioxa-8-azaspiro[4.5]dec-8-yl]-6-(trifluoromethyl)-4H-1,3-benzothiazin-4-one, Decaprenylphosphoryl-beta-D-ribose oxidase, FLAVIN-ADENINE DINUCLEOTIDE, ...
Authors:Futterer, K, Batt, S.M, Besra, G.S.
Deposit date:2018-08-21
Release date:2018-08-29
Last modified:2024-01-17
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Novel insight into the reaction of nitro, nitroso and hydroxylamino benzothiazinones and of benzoxacinones with Mycobacterium tuberculosis DprE1.
Sci Rep, 8, 2018
6HF3
DownloadVisualize
BU of 6hf3 by Molmil
M tuberculosis DprE1 in complex with a covalently bound nitrobenzothiazinone
Descriptor: 2-(4-(cyclohexylmethyl)piperazin-1-yl)-8-nitro-6-(trifluoromethyl)-4H-benzo[e][1,3]thiazin-4-one, bound form, Decaprenylphosphoryl-beta-D-ribose oxidase, ...
Authors:Futterer, K, Batt, S.M, Besra, G.S.
Deposit date:2018-08-21
Release date:2018-08-29
Last modified:2024-01-17
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Novel insight into the reaction of nitro, nitroso and hydroxylamino benzothiazinones and of benzoxacinones with Mycobacterium tuberculosis DprE1.
Sci Rep, 8, 2018
4KWL
DownloadVisualize
BU of 4kwl by Molmil
Rat cysteine dioxygenase with 3-mercaptopropionic acid persulfide bound
Descriptor: 3-disulfanylpropanoic acid, Cysteine dioxygenase type 1, FE (II) ION
Authors:Souness, R.J, Wilbanks, S.M, Jameson, G.B, Jameson, G.N.L.
Deposit date:2013-05-24
Release date:2013-10-23
Last modified:2023-09-20
Method:X-RAY DIFFRACTION (1.63 Å)
Cite:Mechanistic implications of persulfenate and persulfide binding in the active site of cysteine dioxygenase.
Biochemistry, 52, 2013
4MDT
DownloadVisualize
BU of 4mdt by Molmil
Structure of LpxC bound to the reaction product UDP-(3-O-(R-3-hydroxymyristoyl))-glucosamine
Descriptor: PHOSPHATE ION, UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase, ZINC ION, ...
Authors:Clayton, G.M, Klein, D.J, Rickert, K.W, Patel, S.B, Kornienko, M, Zugay-Murphy, J, Reid, J.C, Tummala, S, Sharma, S, Singh, S.B, Miesel, L, Lumb, K.J, Soisson, S.M.
Deposit date:2013-08-23
Release date:2013-10-16
Last modified:2023-09-20
Method:X-RAY DIFFRACTION (2.59 Å)
Cite:Structure of the Bacterial Deacetylase LpxC Bound to the Nucleotide Reaction Product Reveals Mechanisms of Oxyanion Stabilization and Proton Transfer.
J.Biol.Chem., 288, 2013
4H89
DownloadVisualize
BU of 4h89 by Molmil
The Structure of a GCN5-Related N-Acetyltransferase from Kribbella flavida
Descriptor: GCN5-related N-acetyltransferase
Authors:Cuff, M.E, Mcknight, S.M, Mack, J.C, Endres, M, Joachimiak, A, Midwest Center for Structural Genomics (MCSG)
Deposit date:2012-09-21
Release date:2012-10-10
Last modified:2017-11-15
Method:X-RAY DIFFRACTION (1.37 Å)
Cite:The Structure of a GCN5-Related N-Acetyltransferase from Kribbella flavida.
TO BE PUBLISHED
4M80
DownloadVisualize
BU of 4m80 by Molmil
The structure of E292S glycosynthase variant of exo-1,3-beta-glucanase from Candida albicans at 1.85A resolution
Descriptor: EXO-1,3-BETA-GLUCANASE
Authors:Nakatani, Y, Cutfield, S.M, Larsen, D.S, Cutfield, J.F.
Deposit date:2013-08-12
Release date:2014-06-25
Last modified:2023-09-20
Method:X-RAY DIFFRACTION (1.858 Å)
Cite:Major Change in Regiospecificity for the Exo-1,3-beta-glucanase from Candida albicans following Its Conversion to a Glycosynthase.
Biochemistry, 53, 2014
4LTD
DownloadVisualize
BU of 4ltd by Molmil
Crystal structures of NADH:FMN oxidoreductase (EMOB) - apo form
Descriptor: NADH-dependent FMN reductase, PHOSPHATE ION, SULFATE ION
Authors:Nissen, M.S, Youn, B, Knowles, B.D, Ballinger, J.W, Jun, S, Belchik, S.M, Xun, L, Kang, C.
Deposit date:2013-07-23
Release date:2013-08-07
Method:X-RAY DIFFRACTION (2.186 Å)
Cite:Crystal structures of NADH:FMN oxidoreductase (EmoB) at different stages of catalysis.
J.Biol.Chem., 283, 2008
3B55
DownloadVisualize
BU of 3b55 by Molmil
Crystal structure of the Q81BN2_BACCR protein from Bacillus cereus. NESG target BcR135
Descriptor: CALCIUM ION, Succinoglycan biosynthesis protein
Authors:Vorobiev, S.M, Chen, Y, Kuzin, A.P, Seetharaman, J, Wang, H, Cunningham, K, Owens, L, Maglaqui, M, Xiao, R, Acton, T.B, Montelione, G.T, Tong, L, Hunt, J.F, Northeast Structural Genomics Consortium (NESG)
Deposit date:2007-10-25
Release date:2007-11-06
Last modified:2021-10-20
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Crystal structure of the Q81BN2_BACCR protein from Bacillus cereus.
To be Published

224201

PDB entries from 2024-08-28

PDB statisticsPDBj update infoContact PDBjnumon