Loading
PDBj
MenuPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help
PDB: 414 results

2HWB
DownloadVisualize
BU of 2hwb by Molmil
A comparison of the anti-rhinoviral drug binding pocket in hrv14 and hrv1a
Descriptor: 5-(3-(2,6-DICHLORO-4-(4,5-DIHYDRO-2-OXAZOLYL)PHENOXY)PROPYL)-3-METHYL ISOXAZOLE, HUMAN RHINOVIRUS 14 COAT PROTEIN (SUBUNIT VP1), HUMAN RHINOVIRUS 14 COAT PROTEIN (SUBUNIT VP2), ...
Authors:Kim, K.H, Rossmann, M.G.
Deposit date:1994-01-25
Release date:1994-11-01
Last modified:2024-05-29
Method:X-RAY DIFFRACTION (3 Å)
Cite:A comparison of the anti-rhinoviral drug binding pocket in HRV14 and HRV1A.
J.Mol.Biol., 230, 1993
2HWD
DownloadVisualize
BU of 2hwd by Molmil
A COMPARISON OF THE ANTI-RHINOVIRAL DRUG BINDING POCKET IN HRV14 AND HRV1A
Descriptor: 5-(3-(2,6-DICHLORO-4-(4,5-DIHYDRO-2-OXAZOLYL)PHENOXY)PROPYL)-3-METHYL ISOXAZOLE, HUMAN RHINOVIRUS 1A COAT PROTEIN (SUBUNIT VP1), HUMAN RHINOVIRUS 1A COAT PROTEIN (SUBUNIT VP2), ...
Authors:Kim, K.H, Rossmann, M.G.
Deposit date:1994-01-25
Release date:1994-09-30
Last modified:2024-05-29
Method:X-RAY DIFFRACTION (3.8 Å)
Cite:A comparison of the anti-rhinoviral drug binding pocket in HRV14 and HRV1A.
J.Mol.Biol., 230, 1993
1TJA
DownloadVisualize
BU of 1tja by Molmil
Fitting of gp8, gp9, and gp11 into the cryo-EM reconstruction of the bacteriophage T4 contracted tail
Descriptor: Baseplate structural protein Gp11, Baseplate structural protein Gp8, Baseplate structural protein Gp9
Authors:Leiman, P.G, Chipman, P.R, Kostyuchenko, V.A, Mesyanzhinov, V.V, Rossmann, M.G.
Deposit date:2004-06-03
Release date:2004-08-31
Last modified:2024-02-14
Method:ELECTRON MICROSCOPY (16 Å)
Cite:Three-dimensional rearrangement of proteins in the tail of bacteriophage t4 on infection of its host
Cell(Cambridge,Mass.), 118, 2004
2X5I
DownloadVisualize
BU of 2x5i by Molmil
Crystal structure echovirus 7
Descriptor: LAURIC ACID, VP1, VP2, ...
Authors:Plevka, P, Hafenstein, S, Zhang, Y, Bowman, V.D, Chipman, P.R, Bator, C.M, Rossmann, M.G.
Deposit date:2010-02-08
Release date:2010-12-22
Last modified:2023-12-20
Method:X-RAY DIFFRACTION (3.1 Å)
Cite:Interaction of Decay-Accelerating Factor with Echovirus 7.
J.Virol., 84, 2010
1S48
DownloadVisualize
BU of 1s48 by Molmil
Crystal structure of RNA-dependent RNA polymerase construct 1 (residues 71-679) from BVDV
Descriptor: RNA-dependent RNA polymerase
Authors:Choi, K.H, Groarke, J.M, Young, D.C, Kuhn, R.J, Smith, J.L, Pevear, D.C, Rossmann, M.G.
Deposit date:2004-01-15
Release date:2004-04-06
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (3 Å)
Cite:The structure of the RNA-dependent RNA polymerase from bovine viral diarrhea virus establishes the role of GTP in de novo initiation.
Proc.Natl.Acad.Sci.Usa, 101, 2004
1S4F
DownloadVisualize
BU of 1s4f by Molmil
Crystal Structure of RNA-dependent RNA polymerase construct 2 from bovine viral diarrhea virus (BVDV)
Descriptor: RNA-dependent RNA polymerase
Authors:Choi, K.H, Groarke, J.M, Young, D.C, Kuhn, R.J, Smith, J.L, Pevear, D.C, Rossmann, M.G.
Deposit date:2004-01-16
Release date:2004-04-06
Last modified:2024-10-30
Method:X-RAY DIFFRACTION (3 Å)
Cite:The structure of the RNA-dependent RNA polymerase from bovine viral diarrhea virus establishes the role of GTP in de novo initiation.
Proc.Natl.Acad.Sci.Usa, 101, 2004
4KVC
DownloadVisualize
BU of 4kvc by Molmil
2H2 Fab fragment of immature Dengue virus
Descriptor: Ig heavy chain V region MOPC 21, Igh protein, Ig kappa chain V-V region MOPC 21, ...
Authors:Wang, Z, Rossmann, M.G.
Deposit date:2013-05-22
Release date:2013-07-24
Last modified:2017-08-02
Method:X-RAY DIFFRACTION (2.306 Å)
Cite:Obstruction of Dengue Virus Maturation by Fab Fragments of the 2H2 Antibody.
J.Virol., 87, 2013
1S49
DownloadVisualize
BU of 1s49 by Molmil
Crystal Structure of RNA-dependent RNA polymerase construct 1 (residues 71-679) from bovine viral diarrhea virus complexed with GTP
Descriptor: GUANOSINE-5'-TRIPHOSPHATE, RNA-dependent RNA polymerase
Authors:Choi, K.H, Groarke, J.M, Young, D.C, Kuhn, R.J, Smith, J.L, Pevear, D.C, Rossmann, M.G.
Deposit date:2004-01-15
Release date:2004-04-06
Last modified:2024-10-30
Method:X-RAY DIFFRACTION (3 Å)
Cite:The structure of the RNA-dependent RNA polymerase from bovine viral diarrhea virus establishes the role of GTP in de novo initiation.
Proc.Natl.Acad.Sci.Usa, 101, 2004
1YUE
DownloadVisualize
BU of 1yue by Molmil
Bacteriophage T4 capsid vertex protein gp24
Descriptor: Head vertex protein Gp24
Authors:Fokine, A, Leiman, P.G, Shneider, M.M, Ahvazi, B, Boeshans, K.M, Steven, A.C, Black, L.W, Mesyanzhinov, V.V, Rossmann, M.G.
Deposit date:2005-02-14
Release date:2005-04-26
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.9 Å)
Cite:Structural and functional similarities between the capsid proteins of bacteriophages T4 and HK97 point to a common ancestry.
Proc.Natl.Acad.Sci.Usa, 102, 2005
1PDL
DownloadVisualize
BU of 1pdl by Molmil
Fitting of gp5 in the cryoEM reconstruction of the bacteriophage T4 baseplate
Descriptor: Tail-associated lysozyme
Authors:Kostyuchenko, V.A, Leiman, P.G, Chipman, P.R, Kanamaru, S, van Raaij, M.J, Arisaka, F, Mesyanzhinov, V.V, Rossmann, M.G.
Deposit date:2003-05-19
Release date:2003-09-09
Last modified:2024-02-14
Method:ELECTRON MICROSCOPY (12 Å)
Cite:Three-dimensional structure of the bacteriophage T4 baseplate
Nat.Struct.Biol., 10, 2003
1PDJ
DownloadVisualize
BU of 1pdj by Molmil
Fitting of gp27 into cryoEM reconstruction of bacteriophage T4 baseplate
Descriptor: Baseplate structural protein Gp27
Authors:Kostyuchenko, V.A, Leiman, P.G, Chipman, P.R, Kanamaru, S, van Raaij, M.J, Arisaka, F, Mesyanzhinov, V.V, Rossmann, M.G.
Deposit date:2003-05-19
Release date:2003-09-09
Last modified:2024-02-14
Method:ELECTRON MICROSCOPY (12 Å)
Cite:Three-dimensional structure of the bacteriophage T4 baseplate
Nat.Struct.Biol., 10, 2003
1PDP
DownloadVisualize
BU of 1pdp by Molmil
Fitting of gp9 structure into the bacteriophage T4 baseplate cryoEM reconstruction
Descriptor: Baseplate structural protein Gp9
Authors:Kostyuchenko, V.A, Leiman, P.G, Chipman, P.R, Kanamaru, S, van Raaij, M.J, Arisaka, F, Mesyanzhinov, V.V, Rossmann, M.G.
Deposit date:2003-05-19
Release date:2003-09-09
Last modified:2024-02-14
Method:ELECTRON MICROSCOPY (12 Å)
Cite:Three-dimensional structure of the bacteriophage T4 baseplate
Nat.Struct.Biol., 10, 2003
4JPN
DownloadVisualize
BU of 4jpn by Molmil
Bacteriophage phiX174 H protein residues 143-221
Descriptor: Minor spike protein H
Authors:Sun, L, Young, L.N, Boudko, S.B, Fokine, A, Zhang, X, Rossmann, M.G, Fane, B.A.
Deposit date:2013-03-19
Release date:2013-12-11
Last modified:2024-02-28
Method:X-RAY DIFFRACTION (2.101 Å)
Cite:Icosahedral bacteriophage Phi X174 forms a tail for DNA transport during infection.
Nature, 505, 2014
2CAS
DownloadVisualize
BU of 2cas by Molmil
THE CANINE PARVOVIRUS EMPTY CAPSID STRUCTURE
Descriptor: CANINE PARVOVIRUS EMPTY CAPSID (STRAIN D) VIRAL PROTEIN 2
Authors:Wu, H, Rossmann, M.G.
Deposit date:1993-08-24
Release date:1994-01-31
Last modified:2024-10-23
Method:X-RAY DIFFRACTION (3 Å)
Cite:The canine parvovirus empty capsid structure.
J.Mol.Biol., 233, 1993
3KK5
DownloadVisualize
BU of 3kk5 by Molmil
Crystal structure of PBCV-1 VP54 fitted into a cryo-EM reconstruction of the virophage Sputnik
Descriptor: Major capsid protein
Authors:Sun, S, Rossmann, M.G.
Deposit date:2009-11-04
Release date:2009-11-17
Last modified:2024-02-21
Method:ELECTRON MICROSCOPY (10.6 Å)
Cite:Structural studies of the sputnik virophage.
J.Virol., 84, 2010
1Z7Z
DownloadVisualize
BU of 1z7z by Molmil
Cryo-em structure of human coxsackievirus A21 complexed with five domain icam-1kilifi
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, Intercellular adhesion molecule-1, human coxsackievirus A21
Authors:Xiao, C, Bator-Kelly, C.M, Rieder, E, Chipman, P.R, Craig, A, Kuhn, R.J, Wimmer, E, Rossmann, M.G.
Deposit date:2005-03-28
Release date:2005-08-02
Last modified:2021-10-20
Method:ELECTRON MICROSCOPY (8 Å)
Cite:The crystal structure of coxsackievirus a21 and its interaction with icam-1.
Structure, 13, 2005
3N9G
DownloadVisualize
BU of 3n9g by Molmil
Crystal structure of the Fab fragment of the human neutralizing anti-West Nile Virus MAb CR4354
Descriptor: Fab fragment of MAb CR4354, heavy chain, light chain
Authors:Kaufmann, B, Rossmann, M.G.
Deposit date:2010-05-29
Release date:2010-11-24
Last modified:2023-09-06
Method:X-RAY DIFFRACTION (1.434 Å)
Cite:Neutralization of West Nile virus by cross-linking of its surface proteins with Fab fragments of the human monoclonal antibody CR4354.
Proc.Natl.Acad.Sci.USA, 107, 2010
5AFG
DownloadVisualize
BU of 5afg by Molmil
Structure of the Stapled Peptide Bound to Mdm2
Descriptor: 1,8-DIETHYL-1,8-DIHYDRODIBENZO[3,4:7,8][1,2,3]TRIAZOLO[4',5':5,6]CYCLOOCTA[1,2-D][1,2,3]TRIAZOLE, E3 UBIQUITIN-PROTEIN LIGASE MDM2, STAPLED PEPTIDE
Authors:Lau, Y.H, Wu, Y, Rossmann, M, de Andrade, P, Tan, Y.S, McKenzie, G.J, Venkitaraman, A.R, Hyvonen, M, Spring, D.R.
Deposit date:2015-01-22
Release date:2016-01-27
Last modified:2024-01-10
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Double Strain-Promoted Macrocyclization for the Rapid Selection of Cell-Active Stapled Peptides.
Angew.Chem.Int.Ed.Engl., 54, 2015
1PDF
DownloadVisualize
BU of 1pdf by Molmil
Fitting of gp11 crystal structure into 3D cryo-EM reconstruction of bacteriophage T4 baseplate-tail tube complex
Descriptor: Baseplate structural protein Gp11
Authors:Kostyuchenko, V.A, Leiman, P.G, Chipman, P.R, Kanamaru, S, van Raaij, M.J, Arisaka, F, Mesyanzhinov, V.V, Rossmann, M.G.
Deposit date:2003-05-19
Release date:2003-09-09
Last modified:2024-02-14
Method:ELECTRON MICROSCOPY (12 Å)
Cite:Three-dimensional structure of bacteriophage T4 baseplate
Nat.Struct.Biol., 10, 2003
1PDM
DownloadVisualize
BU of 1pdm by Molmil
Fitting of gp8 structure into the cryoEM reconstruction of the bacteriophage T4 baseplate
Descriptor: Baseplate structural protein Gp8
Authors:Kostyuchenko, V.A, Leiman, P.G, Chipman, P.R, Kanamaru, S, van Raaij, M.J, Arisaka, F, Mesyanzhinov, V.V, Rossmann, M.G.
Deposit date:2003-05-19
Release date:2003-09-09
Last modified:2024-02-14
Method:ELECTRON MICROSCOPY (12 Å)
Cite:Three-dimensional structure of the bacteriophage T4 baseplate
Nat.Struct.Biol., 10, 2003
1TG8
DownloadVisualize
BU of 1tg8 by Molmil
The structure of Dengue virus E glycoprotein
Descriptor: 2-acetamido-2-deoxy-alpha-D-glucopyranose, envelope glycoprotein
Authors:Zhang, Y, Zhang, W, Ogata, S, Clements, D, Strauss, J.H, Baker, T.S, Rossmann, M.G.
Deposit date:2004-05-28
Release date:2004-09-28
Last modified:2020-07-29
Method:X-RAY DIFFRACTION (2.61 Å)
Cite:Conformational changes of the flavivirus e glycoprotein
Structure, 12, 2004
3P0S
DownloadVisualize
BU of 3p0s by Molmil
Crystal structure of Bombyx mori densovirus 1 capsid
Descriptor: Capsid protein VP
Authors:Kaufmann, B, Rossmann, M.G.
Deposit date:2010-09-29
Release date:2011-03-16
Last modified:2024-05-22
Method:X-RAY DIFFRACTION (3.1 Å)
Cite:Structure of Bombyx mori densovirus 1, a silkworm pathogen.
J.Virol., 85, 2011
3SHS
DownloadVisualize
BU of 3shs by Molmil
Three N-terminal domains of the bacteriophage RB49 Highly Immunogenic Outer Capsid protein (Hoc)
Descriptor: Hoc head outer capsid protein, MAGNESIUM ION
Authors:Fokine, A, Islam, M.Z, Zhang, Z, Bowman, V.D, Rao, V.B, Rossmann, M.G.
Deposit date:2011-06-16
Release date:2011-06-29
Last modified:2024-02-28
Method:X-RAY DIFFRACTION (1.951 Å)
Cite:Structure of the three N-terminal immunoglobulin domains of the highly immunogenic outer capsid protein from a T4-like bacteriophage.
J.Virol., 85, 2011
2FKK
DownloadVisualize
BU of 2fkk by Molmil
Crystal structure of the C-terminal domain of the bacteriophage T4 gene product 10
Descriptor: 1,2-ETHANEDIOL, 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL, BROMIDE ION, ...
Authors:Leiman, P.G, Shneider, M.M, Mesyanzhinov, V.V, Rossmann, M.G.
Deposit date:2006-01-04
Release date:2006-04-04
Last modified:2024-02-14
Method:X-RAY DIFFRACTION (1.2 Å)
Cite:Evolution of bacteriophage tails: structure of t4 gene product 10
J.Mol.Biol., 358, 2006
4QXU
DownloadVisualize
BU of 4qxu by Molmil
Novel Inhibition Mechanism of Membrane Metalloprotease by an Exosite-Swiveling Conformational antibody
Descriptor: Matrix metalloproteinase-14, SULFATE ION, anti_MT1-MMP Heavy chain, ...
Authors:Udi, Y, Grossman, M, Solomonov, I, Dym, O, Rozenberg, H, Moreno, v, Cuiniasse, P, Dive, V, Arroyo, A.G, Sagi, I, Israel Structural Proteomics Center (ISPC)
Deposit date:2014-07-22
Release date:2014-12-17
Last modified:2024-10-16
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Inhibition mechanism of membrane metalloprotease by an exosite-swiveling conformational antibody.
Structure, 23, 2015

226707

PDB entries from 2024-10-30

PDB statisticsPDBj update infoContact PDBjnumon