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PDB: 414 results

3J8D
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Cryoelectron microscopy of dengue-Fab E104 complex at pH 5.5
Descriptor: Envelope protein E, antibody E111 Fab fragment, glycoprotein DIII
Authors:Zhang, X.Z, Sheng, J, Austin, S.K, Hoornweg, T, Smit, J.M, Kuhn, R.J, Diamond, M.S, Rossmann, M.G.
Deposit date:2014-10-13
Release date:2014-11-12
Last modified:2024-02-21
Method:ELECTRON MICROSCOPY (26 Å)
Cite:Structure of Acidic pH Dengue Virus Showing the Fusogenic Glycoprotein Trimers.
J.Virol., 89, 2015
1K4R
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BU of 1k4r by Molmil
Structure of Dengue Virus
Descriptor: MAJOR ENVELOPE PROTEIN E
Authors:Kuhn, R.J, Zhang, W, Rossmann, M.G, Pletnev, S.V, Corver, J, Lenches, E, Jones, C.T, Mukhopadhyay, S, Chipman, P.R, Strauss, E.G, Baker, T.S, Strauss, J.H.
Deposit date:2001-10-08
Release date:2002-03-13
Last modified:2024-10-30
Method:ELECTRON MICROSCOPY (24 Å)
Cite:Structure of dengue virus: implications for flavivirus organization, maturation, and fusion.
Cell(Cambridge,Mass.), 108, 2002
1KXA
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SINDBIS VIRUS CAPSID, (WILD-TYPE) RESIDUES 106-264, TETRAGONAL CRYSTAL FORM
Descriptor: SINDBIS VIRUS CAPSID PROTEIN
Authors:Choi, H.-K, Rossmann, M.G.
Deposit date:1996-05-05
Release date:1996-11-08
Last modified:2024-02-14
Method:X-RAY DIFFRACTION (3.1 Å)
Cite:Structural analysis of Sindbis virus capsid mutants involving assembly and catalysis.
J.Mol.Biol., 262, 1996
3DTX
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Crystal structure of HLA-B*2705 complexed with the double citrullinated vasoactive intestinal peptide type 1 receptor (VIPR) peptide (residues 400-408)
Descriptor: Beta-2-microglobulin, Double citrullinated vasoactive intestinal polypeptide receptor, MHC class I antigen (Fragment)
Authors:Beltrami, A, Gabdulkhakov, A, Rossmann, M, Ziegler, A, Uchanska-Ziegler, B, Saenger, W.
Deposit date:2008-07-16
Release date:2009-05-05
Last modified:2023-12-27
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Citrullination-and mhc polymorphism-dependent conformational changes of a self peptide
To be Published
3ZFF
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Human enterovirus 71 in complex with capsid binding inhibitor WIN51711
Descriptor: 5-(7-(4-(4,5-DIHYDRO-2-OXAZOLYL)PHENOXY)HEPTYL)-3-METHYL ISOXAZOLE, VP1, VP2, ...
Authors:Plevka, P, Perera, R, Yap, M.L, Cardosa, J, Kuhn, R.J, Rossmann, M.G.
Deposit date:2012-12-11
Release date:2013-03-27
Last modified:2023-12-20
Method:X-RAY DIFFRACTION (3.4 Å)
Cite:Structure of Human Enterovirus 71 in Complex with a Capsid-Binding Inhibitor.
Proc.Natl.Acad.Sci.USA, 110, 2013
3ZFE
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Human enterovirus 71 in complex with capsid binding inhibitor WIN51711
Descriptor: CHLORIDE ION, SODIUM ION, SPHINGOSINE, ...
Authors:Plevka, P, Perera, R, Yap, M.L, Cardosa, J, Kuhn, R.J, Rossmann, M.G.
Deposit date:2012-12-11
Release date:2013-03-27
Last modified:2023-12-20
Method:X-RAY DIFFRACTION (2.7 Å)
Cite:Structure of Human Enterovirus 71 in Complex with a Capsid-Binding Inhibitor.
Proc.Natl.Acad.Sci.USA, 110, 2013
3IY0
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Variable domains of the x-ray structure of Fab 14 fitted into the cryoEM reconstruction of the virus-Fab 14 complex
Descriptor: Fab 14, heavy domain, light domain
Authors:Hafenstein, S, Bowman, V.D, Sun, T, Nelson, C.D, Palermo, L.M, Chipman, P.R, Battisti, A.J, Parrish, C.R, Rossmann, M.G.
Deposit date:2009-04-07
Release date:2009-05-12
Last modified:2024-10-30
Method:ELECTRON MICROSCOPY (12.5 Å)
Cite:Structural comparison of different antibodies interacting with parvovirus capsids
J.Virol., 83, 2009
3IG9
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Small outer capsid protein (SOC) of bacteriophage RB69
Descriptor: IMIDAZOLE, Soc small outer capsid protein
Authors:Li, Q, Fokine, A, O'Donnell, E, Rao, V.B, Rossmann, M.G.
Deposit date:2009-07-27
Release date:2009-12-08
Last modified:2024-02-21
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Structure of the Small Outer Capsid Protein, Soc: A Clamp for Stabilizing Capsids of T4-like Phages
J.Mol.Biol., 395, 2010
3SPE
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Crystal structure of the tail sheath protein protease resistant fragment from bacteriophage phiKZ
Descriptor: GLYCEROL, PHIKZ029, PHOSPHATE ION
Authors:Aksyuk, A.A, Kurochkina, L.P, Fokine, A, Mesyanzhinov, V.V, Rossmann, M.G.
Deposit date:2011-07-01
Release date:2011-12-14
Last modified:2024-10-30
Method:X-RAY DIFFRACTION (2.3996 Å)
Cite:Structural conservation of the myoviridae phage tail sheath protein fold.
Structure, 19, 2011
3SUC
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Crystal structure of the pre-mature bacteriophage phi29 gene product 12
Descriptor: ADENOSINE-5'-TRIPHOSPHATE, CALCIUM ION, MAGNESIUM ION, ...
Authors:Xiang, Y, Rossmann, M.G.
Deposit date:2011-07-11
Release date:2011-08-03
Last modified:2023-09-20
Method:X-RAY DIFFRACTION (2.15 Å)
Cite:Crystallographic Insights Into the Autocatalytic Assembly Mechanism of a Bacteriophage Tail Spike
Mol.Cell, 34, 2009
3IY7
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Variable domains of the computer generated model (WAM) of Fab F fitted into the cryoEM reconstruction of the virus-Fab F complex
Descriptor: fragment from neutralizing antibody F (heavy chain), fragment from neutralizing antibody F (light chain)
Authors:Hafenstein, S, Bowman, V.D, Sun, T, Nelson, C.D, Palermo, L.M, Chipman, P.R, Battisti, A.J, Parrish, C.R, Rossmann, M.G.
Deposit date:2009-04-09
Release date:2009-05-12
Last modified:2024-10-30
Method:ELECTRON MICROSCOPY (14 Å)
Cite:Structural comparison of different antibodies interacting with parvovirus capsids
J.Virol., 83, 2009
3IY2
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Variable domains of the computer generated model (WAM) of Fab 6 fitted into the cryoEM reconstruction of the virus-Fab 6 complex
Descriptor: Antibody 6, heavy chain, light chain
Authors:Hafenstein, S, Bowman, V.D, Sun, T, Nelson, C.D, Palermo, L.M, Chipman, P.R, Battisti, A.J, Parrish, C.R, Rossmann, M.G.
Deposit date:2009-04-09
Release date:2009-05-12
Last modified:2018-07-18
Method:ELECTRON MICROSCOPY (18 Å)
Cite:Structural comparison of different antibodies interacting with parvovirus capsids
J.Virol., 83, 2009
3IGE
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BU of 3ige by Molmil
Small outer capsid protein (Soc) from bacteriophage RB69
Descriptor: IMIDAZOLE, Soc small outer capsid protein
Authors:Li, Q, Fokine, A, O'Donnell, E, Rao, V.B, Rossmann, M.G.
Deposit date:2009-07-27
Release date:2009-12-08
Last modified:2024-04-03
Method:X-RAY DIFFRACTION (2.254 Å)
Cite:Structure of the Small Outer Capsid Protein, Soc: A Clamp for Stabilizing Capsids of T4-like Phages
J.Mol.Biol., 395, 2010
3IY4
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BU of 3iy4 by Molmil
Variable domains of the computer generated model (WAM) of Fab 15 fitted into the cryoEM reconstruction of the virus-Fab 15 complex
Descriptor: fragment of neutralizing antibody 15 (heavy chain), fragment of neutralizing antibody 15 (light chain)
Authors:Hafenstein, S, Bowman, V.D, Sun, T, Nelson, C.D, Palermo, L.M, Chipman, P.R, Battisti, A.J, Parrish, C.R, Rossmann, M.G.
Deposit date:2009-04-09
Release date:2009-05-12
Last modified:2018-07-18
Method:ELECTRON MICROSCOPY (11.7 Å)
Cite:Structural comparison of different antibodies interacting with parvovirus capsids
J.Virol., 83, 2009
3IY6
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BU of 3iy6 by Molmil
Variable domains of the computer generated model (WAM) of Fab E fitted into the cryoEM reconstruction of the virus-Fab E complex
Descriptor: fragment from neutralizing antibody E (heavy chain), fragment from neutralizing antibody E (light chain)
Authors:Hafenstein, S, Bowman, V.D, Sun, T, Nelson, C.D, Palermo, L.M, Chipman, P.R, Battisti, A.J, Parrish, C.R, Rossmann, M.G.
Deposit date:2009-04-09
Release date:2009-05-12
Last modified:2018-07-18
Method:ELECTRON MICROSCOPY (12 Å)
Cite:Structural comparison of different antibodies interacting with parvovirus capsids
J.Virol., 83, 2009
3IY1
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BU of 3iy1 by Molmil
Variable domains of the WAM of Fab B fitted into the cryoEM reconstruction of the virus-Fab B complex
Descriptor: Fab B, heavy chain, light chain
Authors:Hafenstein, S, Bowman, V.D, Sun, T, Nelson, C.D, Palermo, L.M, Battisti, A.J, Parrish, C.R, Rossmann, M.G.
Deposit date:2009-04-09
Release date:2009-05-12
Last modified:2018-07-18
Method:ELECTRON MICROSCOPY (18 Å)
Cite:Structural comparison of different antibodies interacting with parvovirus capsids
J.Virol., 83, 2009
3IY5
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BU of 3iy5 by Molmil
Variable domains of the mouse Fab (1AIF) fitted into the cryoEM reconstruction of the virus-Fab 16 complex
Descriptor: antibody fragment IGG2A (heavy chain), antibody fragment IGG2A (light chain)
Authors:Hafenstein, S, Bowman, V.D, Sun, T, Nelson, C.D, Palermo, L.M, Chipman, P.R, Battisti, A.J, Parrish, C.R, Rossmann, M.G.
Deposit date:2009-04-09
Release date:2009-05-12
Last modified:2018-07-18
Method:ELECTRON MICROSCOPY (18 Å)
Cite:Structural comparison of different antibodies interacting with parvovirus capsids
J.Virol., 83, 2009
3IY3
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BU of 3iy3 by Molmil
Variable domains of the computer generated model (WAM) of Fab 8 fitted into the cryoEM reconstruction of the virus-Fab 8 complex
Descriptor: antibody fragment from neutralizing antibody 8 (heavy chain), antibody fragment from neutralizing antibody 8 (light chain)
Authors:Hafenstein, S, Bowman, V.D, Sun, T, Nelson, C.D, Palermo, L.M, Chipman, P.R, Battisti, A.J, Parrish, C.R, Rossmann, M.G.
Deposit date:2009-04-09
Release date:2009-05-12
Last modified:2024-10-09
Method:ELECTRON MICROSCOPY (11.1 Å)
Cite:Structural comparison of different antibodies interacting with parvovirus capsids
J.Virol., 83, 2009
3J2Z
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Electron Cryo-microscopy of Chikungunya VLP in complex with neutralizing antibody Fab m10
Descriptor: m10 heavy chain, m10 light chain
Authors:Sun, S, Xiang, Y, Rossmann, M.G.
Deposit date:2013-01-28
Release date:2013-04-24
Last modified:2018-07-18
Method:ELECTRON MICROSCOPY (16.9 Å)
Cite:Structural analyses at pseudo atomic resolution of Chikungunya virus and antibodies show mechanisms of neutralization.
Elife, 2, 2013
3J42
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Obstruction of Dengue Virus Maturation by Fab Fragments of the 2H2 Antibody
Descriptor: Envelope protein E, Ig heavy chain V region MOPC 21, Igh protein chimera, ...
Authors:Wang, Z, Pennington, J.G, Jiang, W, Rossmann, M.G.
Deposit date:2013-06-13
Release date:2013-07-17
Last modified:2018-07-18
Method:ELECTRON MICROSCOPY (21 Å)
Cite:Obstruction of Dengue Virus Maturation by Fab Fragments of the 2H2 Antibody.
J.Virol., 87, 2013
3J30
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BU of 3j30 by Molmil
Electron Cryo-microscopy of Chikungunya VLP in complex with neutralizing antibody Fab CHK152
Descriptor: CHK152 heavy chain, CHK152 light chain
Authors:Sun, S, Xiang, Y, Rossmann, M.G.
Deposit date:2013-01-28
Release date:2013-04-24
Last modified:2018-07-18
Method:ELECTRON MICROSCOPY (16 Å)
Cite:Structural analyses at pseudo atomic resolution of Chikungunya virus and antibodies show mechanisms of neutralization.
Elife, 2, 2013
3J2X
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Electron Cryo-microscopy of Chikungunya VLP in complex with neutralizing antibody Fab m242
Descriptor: m242 heavy chain, m242 light chain
Authors:Sun, S, Xiang, Y, Rossmann, M.G.
Deposit date:2013-01-28
Release date:2013-04-24
Last modified:2024-10-30
Method:ELECTRON MICROSCOPY (15.6 Å)
Cite:Structural analyses at pseudo atomic resolution of Chikungunya virus and antibodies show mechanisms of neutralization.
Elife, 2, 2013
3J2N
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BU of 3j2n by Molmil
The X-ray structure of the gp15 hexamer and the model of the gp18 protein fitted into the cryo-EM reconstruction of the contracted T4 tail
Descriptor: Tail connector protein Gp15, Tail sheath protein Gp18
Authors:Fokine, A, Zhang, Z, Kanamaru, S, Bowman, V.D, Aksyuk, A, Arisaka, F, Rao, V.B, Rossmann, M.G.
Deposit date:2012-11-10
Release date:2013-03-06
Last modified:2024-02-21
Method:ELECTRON MICROSCOPY (16 Å)
Cite:The molecular architecture of the bacteriophage t4 neck.
J.Mol.Biol., 425, 2013
3J35
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Cryo-EM reconstruction of Dengue virus at 37 C
Descriptor: envelope protein
Authors:Zhang, X.Z, Sheng, J, Plevka, P, Kuhn, R.J, Diamond, M.S, Rossmann, M.G.
Deposit date:2013-02-24
Release date:2013-04-10
Last modified:2024-02-21
Method:ELECTRON MICROSCOPY (35 Å)
Cite:Dengue structure differs at the temperatures of its human and mosquito hosts.
Proc.Natl.Acad.Sci.USA, 110, 2013
3J2Y
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Electron Cryo-microscopy of Chikungunya VLP in complex with neutralizing antibody Fab 9.8B
Descriptor: 9.8B heavy chain, 9.8B light chain
Authors:Sun, S, Xiang, Y, Rossmann, M.G.
Deposit date:2013-01-28
Release date:2013-04-24
Last modified:2024-10-30
Method:ELECTRON MICROSCOPY (14.9 Å)
Cite:Structural analyses at pseudo atomic resolution of Chikungunya virus and antibodies show mechanisms of neutralization.
Elife, 2, 2013

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