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PDB: 220 results

4W7N
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BU of 4w7n by Molmil
CRYSTAL STRUCTURE OF A DECOLORIZING PEROXIDASE (DYP) FROM AURICULARIA AURICULA-JUDAE. Y147S AND W377S DOUBLE MUTANT
Descriptor: Dye-decolorizing peroxidase, PROTOPORPHYRIN IX CONTAINING FE
Authors:Medrano, F.J, Romero, A.
Deposit date:2014-08-22
Release date:2015-03-11
Last modified:2024-01-10
Method:X-RAY DIFFRACTION (1.401 Å)
Cite:Catalytic surface radical in dye-decolorizing peroxidase: a computational, spectroscopic and site-directed mutagenesis study.
Biochem.J., 466, 2015
4W64
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Hcp1 protein from Acinetobacter baumannii AB0057
Descriptor: SULFATE ION, Type VI secretion system effector, Hcp1 family
Authors:Ruiz, F.M, Romero, A.
Deposit date:2014-08-20
Release date:2015-07-01
Last modified:2024-01-10
Method:X-RAY DIFFRACTION (1.55 Å)
Cite:Crystal Structure of Hcp from Acinetobacter baumannii: A Component of the Type VI Secretion System.
Plos One, 10, 2015
4IIS
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BU of 4iis by Molmil
Crystal structure of a glycosylated beta-1,3-glucanase (HEV B 2), An allergen from Hevea Brasiliensis (Space group P41)
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, Beta-1,3-glucanase form 'RRII Gln 2', CACODYLATE ION, ...
Authors:Rodriguez-Romero, A, Hernandez-Santoyo, A.
Deposit date:2012-12-20
Release date:2013-11-27
Last modified:2023-09-20
Method:X-RAY DIFFRACTION (2.6676 Å)
Cite:Structural analysis of the endogenous glycoallergen Hev b 2 (endo-beta-1,3-glucanase) from Hevea brasiliensis and its recognition by human basophils.
Acta Crystallogr.,Sect.D, 70, 2014
7ZCL
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BU of 7zcl by Molmil
Unspecific peroxygenase from Collariella virescens
Descriptor: Collariella virescens UPO, HEME C, MAGNESIUM ION
Authors:Santillana, E, Romero, A.
Deposit date:2022-03-28
Release date:2022-05-18
Last modified:2024-01-31
Method:X-RAY DIFFRACTION (1.95 Å)
Cite:Structural Characterization of Two Short Unspecific Peroxygenases: Two Different Dimeric Arrangements.
Antioxidants, 11, 2022
7ZBP
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BU of 7zbp by Molmil
Unspecific peroxygenase from Marasmius rotula
Descriptor: ACETATE ION, DI(HYDROXYETHYL)ETHER, GLYCEROL, ...
Authors:Santillana, E, Romero, A.
Deposit date:2022-03-24
Release date:2022-05-18
Last modified:2024-01-31
Method:X-RAY DIFFRACTION (1.45 Å)
Cite:Structural Characterization of Two Short Unspecific Peroxygenases: Two Different Dimeric Arrangements.
Antioxidants, 11, 2022
3PF3
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BU of 3pf3 by Molmil
Crystal structure of a mutant (C202A) of Triosephosphate isomerase from Giardia lamblia derivatized with MMTS
Descriptor: CALCIUM ION, GLYCEROL, SULFATE ION, ...
Authors:Enriquez-Flores, S, Rodriguez-Romero, A, Hernandez-Santoyo, A, Reyes-Vivas, H.
Deposit date:2010-10-27
Release date:2011-06-22
Last modified:2023-09-06
Method:X-RAY DIFFRACTION (2.098 Å)
Cite:Determining the molecular mechanism of inactivation by chemical modification of triosephosphate isomerase from the human parasite Giardia lamblia: A study for antiparasitic drug design.
Proteins, 79, 2011
1A5F
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BU of 1a5f by Molmil
FAB FRAGMENT OF A MONOCLONAL ANTI-E-SELECTIN ANTIBODY
Descriptor: MONOCLONAL ANTI-E-SELECTIN 7A9 ANTIBODY (HEAVY CHAIN), MONOCLONAL ANTI-E-SELECTIN 7A9 ANTIBODY (LIGHT CHAIN)
Authors:Rodriguez-Romero, A, Almog, O, Tordova, M, Randhawa, Z.
Deposit date:1998-02-16
Release date:1999-04-20
Last modified:2024-10-23
Method:X-RAY DIFFRACTION (2.8 Å)
Cite:Primary and tertiary structures of the Fab fragment of a monoclonal anti-E-selectin 7A9 antibody that inhibits neutrophil attachment to endothelial cells.
J.Biol.Chem., 273, 1998
1CI1
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BU of 1ci1 by Molmil
CRYSTAL STRUCTURE OF TRIOSEPHOSPHATE ISOMERASE FROM TRYPANOSOMA CRUZI IN HEXANE
Descriptor: HEXANE, PROTEIN (TRIOSEPHOSPHATE ISOMERASE)
Authors:Gao, X.-G, Maldondo, E, Perez-Montfort, R, De Gomez-Puyou, M.T, Gomez-Puyou, A, Rodriguez-Romero, A.
Deposit date:1999-04-06
Release date:1999-09-01
Last modified:2023-08-09
Method:X-RAY DIFFRACTION (2 Å)
Cite:Crystal structure of triosephosphate isomerase from Trypanosoma cruzi in hexane.
Proc.Natl.Acad.Sci.USA, 96, 1999
3BDX
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BU of 3bdx by Molmil
Crystal structure of the unstable and highly fibrillogenic Pro7Ser mutant of the Recombinant variable domain 6AJL2
Descriptor: 2-(N-MORPHOLINO)-ETHANESULFONIC ACID, ACETATE ION, Amyloid lambda 6 light chain variable region PIP (fragment), ...
Authors:Hernandez-Santoyo, A, Fuentes-Silva, D, Del Pozo Yauner, L, Becerril, B, Rodriguez-Romero, A.
Deposit date:2007-11-15
Release date:2008-10-28
Last modified:2023-08-30
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:A single mutation at the sheet switch region results in conformational changes favoring lambda6 light-chain fibrillogenesis.
J.Mol.Biol., 396, 2010
5C9K
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BU of 5c9k by Molmil
Crystal structure of a highly fibrillogenic Arg24Gly mutant of the Recombinant variable domain 6AJL2
Descriptor: ACETATE ION, Amyloid lambda 6 light chain variable region PIP
Authors:Hernandez-Santoyo, A, Rodriguez-Romero, A, Luna-Martinez, O.D, Becerril-Lujan, B.
Deposit date:2015-06-27
Release date:2015-08-05
Last modified:2024-10-30
Method:X-RAY DIFFRACTION (1.92 Å)
Cite:Mutating amyloidogenic lambda6 light chain AR back to germline 6aJL2
To Be Published
3MND
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BU of 3mnd by Molmil
Crystallographic analysis of the cystosolic cu/zn Superoxide dismutase from taenia solium
Descriptor: COPPER (II) ION, GLYCEROL, Superoxide dismutase [Cu-Zn], ...
Authors:Hernandez-Santoyo, A, Rodriguez-Romero, A.
Deposit date:2010-04-21
Release date:2011-09-28
Last modified:2023-09-06
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Crystal structure of Cu / Zn superoxide dismutase from Taenia solium reveals metal-mediated self-assembly
Febs J., 278, 2011
4WP4
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BU of 4wp4 by Molmil
Hev b 6.02 (hevein) extracted from surgical gloves
Descriptor: Pro-hevein, THIOUREA
Authors:Galicia, C, Rodriguez-Romero, A.
Deposit date:2014-10-17
Release date:2015-03-04
Last modified:2023-12-27
Method:X-RAY DIFFRACTION (1.43 Å)
Cite:Impact of the vulcanization process on the structural characteristics and IgE recognition of two allergens, Hev b 2 and Hev b 6.02, extracted from latex surgical gloves.
Mol.Immunol., 65, 2015
2OMA
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BU of 2oma by Molmil
Crystallographic analysis of a chemically modified triosephosphate isomerase from Trypanosoma cruzi with dithiobenzylamine (DTBA)
Descriptor: DI(HYDROXYETHYL)ETHER, SULFATE ION, TRIETHYLENE GLYCOL, ...
Authors:Rodriguez-Romero, A, Gomez-Puyou, A.
Deposit date:2007-01-21
Release date:2007-11-20
Last modified:2023-08-30
Method:X-RAY DIFFRACTION (2.15 Å)
Cite:Perturbation of the Dimer Interface of Triosephosphate Isomerase and its Effect on Trypanosoma cruzi.
PLoS Negl Trop Dis, 1, 2007
8BFO
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BU of 8bfo by Molmil
Structure of the apo form of Mpro from SARS-CoV-2
Descriptor: 3C-like proteinase nsp5
Authors:Medrano, F.J, Romero, A.
Deposit date:2022-10-26
Release date:2023-11-08
Method:X-RAY DIFFRACTION (1.99 Å)
Cite:Peptidyl Nitroalkenes Inhibit SARS-CoV-2 Main Protease and Block Virus Replication
To Be Published
8BGD
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BU of 8bgd by Molmil
Structure of Mpro from SARS-CoV-2 in complex with FGA147
Descriptor: (phenylmethyl) N-[(2S)-4-methyl-1-[[(2S)-4-nitro-1-[(3R)-2-oxidanylidenepyrrolidin-3-yl]butan-2-yl]amino]-1-oxidanylidene-pentan-2-yl]carbamate, 3C-like proteinase nsp5
Authors:Medrano, F.J, Romero, A.
Deposit date:2022-10-27
Release date:2023-11-08
Last modified:2024-10-09
Method:X-RAY DIFFRACTION (1.621 Å)
Cite:Peptidyl Nitroalkenes Inhibit SARS-CoV-2 Main Protease and Block Virus Replication
To Be Published
8BFQ
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BU of 8bfq by Molmil
Structure of the apo form of Mpro from SARS-CoV-2
Descriptor: 3C-like proteinase nsp5
Authors:Medrano, F.J, Romero, A.
Deposit date:2022-10-26
Release date:2023-11-08
Method:X-RAY DIFFRACTION (1.863 Å)
Cite:Peptidyl Nitroalkenes Inhibit SARS-CoV-2 Main Protease and Block Virus Replication
To Be Published
2BML
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BU of 2bml by Molmil
Ofloxacin-like antibiotics inhibit pneumococcal cell wall degrading virulence factors
Descriptor: 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL, AUTOLYSIN, DEXTROFLOXACINE, ...
Authors:Fernandez-Tornero, C, Gimenez-Gallego, G, Romero, A, Garcia, E, Pascual-Teresa, B.D, Lopez, R.
Deposit date:2005-03-15
Release date:2005-03-30
Last modified:2023-12-13
Method:X-RAY DIFFRACTION (2.6 Å)
Cite:Ofloxacin-Like Antibiotics Inhibit Pneumococcal Cell Wall-Degrading Virulence Factors
J.Biol.Chem., 280, 2005
8V2X
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BU of 8v2x by Molmil
Crystal Structure of the reconstruction of the worst case of the ancestral triosephosphate isomerase of the last opisthokont common ancestor obtained by bayesian inference
Descriptor: Triosephosphate isomerase
Authors:Perez-Nino, J.A, Rodriguez-Romero, A, Guerra-Borrego, Y, Fernandez-Velasco, D.A.
Deposit date:2023-11-24
Release date:2024-09-04
Method:X-RAY DIFFRACTION (1.43 Å)
Cite:Stable monomers in the ancestral sequence reconstruction of the last opisthokont common ancestor of dimeric triosephosphate isomerase.
Protein Sci., 33, 2024
8V0A
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BU of 8v0a by Molmil
Crystal Structure of the worst case of the reconstruction of the ancestral triosephosphate isomerase of the last opisthokont common ancestor obtained by maximum likelihood with PGH
Descriptor: PHOSPHOGLYCOLOHYDROXAMIC ACID, Triosephosphate isomerase
Authors:Perez-Nino, J.A, Rodriguez-Romero, A, Guerra-Borrego, Y, Fernandez-Velasco, D.A.
Deposit date:2023-11-17
Release date:2024-09-04
Method:X-RAY DIFFRACTION (2.05 Å)
Cite:Stable monomers in the ancestral sequence reconstruction of the last opisthokont common ancestor of dimeric triosephosphate isomerase.
Protein Sci., 33, 2024
8V09
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BU of 8v09 by Molmil
Crystal Structure of the reconstruction of the ancestral triosephosphate isomerase of the last opisthokont common ancestor obtained by bayesian inference with PGH
Descriptor: ACETIC ACID, FORMIC ACID, PHOSPHOGLYCOLOHYDROXAMIC ACID, ...
Authors:Perez-Nino, J.A, Rodriguez-Romero, A, Guerra-Borrego, Y, Fernandez-Velasco, D.A.
Deposit date:2023-11-17
Release date:2024-09-04
Method:X-RAY DIFFRACTION (1.61 Å)
Cite:Stable monomers in the ancestral sequence reconstruction of the last opisthokont common ancestor of dimeric triosephosphate isomerase.
Protein Sci., 33, 2024
8V2W
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BU of 8v2w by Molmil
Crystal Structure of the ancestral triosephosphate isomerase reconstruction of the last opisthokont common ancestor obtained by Bayesian inference
Descriptor: GLYCEROL, Triosephosphate isomerase
Authors:Perez-Nino, J.A, Rodriguez-Romero, A, Guerra, Y, Fernandez-Velasco, D.A.
Deposit date:2023-11-24
Release date:2024-09-04
Method:X-RAY DIFFRACTION (1.38 Å)
Cite:Stable monomers in the ancestral sequence reconstruction of the last opisthokont common ancestor of dimeric triosephosphate isomerase.
Protein Sci., 33, 2024
7SBG
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BU of 7sbg by Molmil
Murine Fab/IgE in complex with profilin from Hevea brasieliensis (Hev b 8)
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-[alpha-L-fucopyranose-(1-6)]2-acetamido-2-deoxy-beta-D-glucopyranose, Fab/IgE Heavy chain, Fab/IgE Light chain, ...
Authors:Rodriguez-Romero, A, Garcia-Ramirez, B.
Deposit date:2021-09-24
Release date:2022-08-10
Last modified:2024-10-09
Method:X-RAY DIFFRACTION (3.34 Å)
Cite:A native IgE in complex with profilin provides insights into allergen recognition and cross-reactivity.
Commun Biol, 5, 2022
7SBD
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BU of 7sbd by Molmil
Murine Fab/IgE in complex with profilin from Hevea brasieliensis (Hev b 8)
Descriptor: Fab/IgE Heavy chain, Fab/IgE Light chain, Profilin-2, ...
Authors:Rodriguez-Romero, A, Garcia-Ramirez, B.
Deposit date:2021-09-24
Release date:2022-08-10
Last modified:2023-10-18
Method:X-RAY DIFFRACTION (3.04 Å)
Cite:A native IgE in complex with profilin provides insights into allergen recognition and cross-reactivity.
Commun Biol, 5, 2022
7SD2
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BU of 7sd2 by Molmil
Murine Fab that recognizes Hev b 8 (profilin for Hevea brasiliensis)
Descriptor: Heavy Chain Antibody IgE/Fab anti-profilin Hev b 8, Light Chain Antibody IgE/Fab anti-profilin Hev b 8
Authors:Rodriguez-Romero, A, Garcia-Ramirez, B.
Deposit date:2021-09-29
Release date:2022-08-10
Last modified:2024-10-16
Method:X-RAY DIFFRACTION (3.75 Å)
Cite:A native IgE in complex with profilin provides insights into allergen recognition and cross-reactivity.
Commun Biol, 5, 2022
8W08
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BU of 8w08 by Molmil
Crystal Structure of the worst case reconstruction of the ancestral triosephosphate isomerase of the last opisthokont common ancestor obtained by maximum likelihood
Descriptor: FLUORIDE ION, Triosephosphate isomerase
Authors:Perez-Nino, J.A, Rodriguez-Romero, A, Guerra-Borrego, Y, Fernandez-Velasco, D.A.
Deposit date:2024-02-13
Release date:2024-09-04
Method:X-RAY DIFFRACTION (1.88 Å)
Cite:Stable monomers in the ancestral sequence reconstruction of the last opisthokont common ancestor of dimeric triosephosphate isomerase.
Protein Sci., 33, 2024

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