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PDB: 54 results

5NW9
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Crystal structure of the complex of Tdp1 with duplex DNA
Descriptor: DNA (5'-D(P*TP*GP*CP*GP*CP*AP*GP*TP*A)-3'), Tyrosyl-DNA phosphodiesterase 1
Authors:Richardson, J.M, Ruksenaite, E, Morris, E.R.
Deposit date:2017-05-05
Release date:2018-01-10
Last modified:2024-01-17
Method:X-RAY DIFFRACTION (2.04 Å)
Cite:Structural basis for DNA 3'-end processing by human tyrosyl-DNA phosphodiesterase 1.
Nat Commun, 9, 2018
5NWA
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BU of 5nwa by Molmil
Crystal structure of the complex of Tdp1 with duplex DNA
Descriptor: DNA (5'-D(P*AP*AP*TP*GP*CP*GP*CP*AP*TP*TP*A)-3'), Tyrosyl-DNA phosphodiesterase 1
Authors:Richardson, J.M, Ruksenaite, E, Morris, E.R.
Deposit date:2017-05-05
Release date:2018-01-10
Last modified:2024-01-17
Method:X-RAY DIFFRACTION (3.2 Å)
Cite:Structural basis for DNA 3'-end processing by human tyrosyl-DNA phosphodiesterase 1.
Nat Commun, 9, 2018
4U7B
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BU of 4u7b by Molmil
Crystal structure of a pre-cleavage Mos1 transpososome
Descriptor: DNA (25-MER), DNA (31-MER), Mariner Mos1 transposase, ...
Authors:Richardson, J.M.
Deposit date:2014-07-30
Release date:2015-02-11
Last modified:2023-12-20
Method:X-RAY DIFFRACTION (3.09 Å)
Cite:Structural role of the flanking DNA in mariner transposon excision.
Nucleic Acids Res., 43, 2015
1E0F
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Crystal structure of the human alpha-thrombin-haemadin complex: an exosite II-binding inhibitor
Descriptor: HAEMADIN, THROMBIN
Authors:Richardson, J.L, Kroeger, B, Hoefken, W, Pereira, P, Huber, R, Bode, W, Fuentes-Prior, P.
Deposit date:2000-03-27
Release date:2000-11-03
Last modified:2023-12-06
Method:X-RAY DIFFRACTION (3.1 Å)
Cite:Crystal Structure of the Human Alpha-Thrombin-Haemadin Complex: An Exosite II-Binding Inhibitor
Embo J., 19, 2000
4ULL
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BU of 4ull by Molmil
SOLUTION NMR STRUCTURE OF VEROTOXIN-1 B-SUBUNIT FROM E. COLI, 5 STRUCTURES
Descriptor: Shiga toxin 1B
Authors:Richardson, J.M, Evans, P.D, Homans, S.W, Donohue-Rolfe, A.
Deposit date:1996-12-17
Release date:1997-04-01
Last modified:2019-12-11
Method:SOLUTION NMR
Cite:Solution structure of the carbohydrate-binding B-subunit homopentamer of verotoxin VT-1 from E. coli.
Nat.Struct.Biol., 4, 1997
5HOO
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BU of 5hoo by Molmil
Crystal structure of the Mos1 Strand Transfer Complex
Descriptor: MAGNESIUM ION, Mariner Mos1 transposase, Mos1 IR DNA NTS, ...
Authors:Richardson, J.M, Morris, E.R.
Deposit date:2016-01-19
Release date:2016-06-01
Last modified:2024-01-10
Method:X-RAY DIFFRACTION (3.3 Å)
Cite:A bend, flip and trap mechanism for transposon integration.
Elife, 5, 2016
8AF2
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BU of 8af2 by Molmil
Human Sterol Carrier Protein with unnatural amino acid 2,2'-bipyridine alanine incorporated at position 111
Descriptor: COPPER (II) ION, Enoyl-CoA hydratase 2, FRAGMENT OF TRITON X-100, ...
Authors:Richardson, J.M, Klemencic, E, Jarvis, A.G.
Deposit date:2022-07-15
Release date:2023-08-16
Last modified:2024-04-03
Method:X-RAY DIFFRACTION (2.51 Å)
Cite:Using BpyAla to generate copper artificial metalloenzymes: a catalytic and structural study.
Catalysis Science And Technology, 14, 2024
8AF3
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Sterol carrier protein Artifical metalloenzyme incorporating Q111C mutation coupled to 2,2'-bipyridine
Descriptor: COPPER (II) ION, Enoyl-CoA hydratase 2, FRAGMENT OF TRITON X-100, ...
Authors:Richardson, J.M, Klemencic, E, Jarvis, A.G.
Deposit date:2022-07-15
Release date:2023-08-16
Last modified:2024-04-03
Method:X-RAY DIFFRACTION (1.52 Å)
Cite:Using BpyAla to generate copper artificial metalloenzymes: a catalytic and structural study.
Catalysis Science And Technology, 14, 2024
2F7T
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BU of 2f7t by Molmil
Crystal structure of the catalytic domain of Mos1 mariner transposase
Descriptor: MAGNESIUM ION, Mos1 transposase
Authors:Richardson, J.M, Dawson, A, Taylor, P, Finnegan, D.J, Walkinshaw, M.D.
Deposit date:2005-12-01
Release date:2006-03-28
Last modified:2024-02-14
Method:X-RAY DIFFRACTION (2.25 Å)
Cite:Mechanism of Mos1 transposition: insights from structural analysis
Embo J., 25, 2006
4DH4
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Macrophage migration inhibitory factor Toxoplasma gondii
Descriptor: MIF, SULFATE ION
Authors:Richardson, J.M.
Deposit date:2012-01-27
Release date:2012-11-21
Last modified:2024-02-28
Method:X-RAY DIFFRACTION (1.82 Å)
Cite:Biochemical and Immunological Characterization of Toxoplasma gondii Macrophage Migration Inhibitory Factor.
J.Biol.Chem., 288, 2013
4R79
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BU of 4r79 by Molmil
Mos1 transposase paired-end complex with left transposon end
Descriptor: MANGANESE (II) ION, Mariner Mos1 transposase, SULFATE ION, ...
Authors:Richardson, J.M.
Deposit date:2014-08-27
Release date:2015-04-22
Last modified:2023-09-20
Method:X-RAY DIFFRACTION (3.1 Å)
Cite:Structural Basis for the Inverted Repeat Preferences of mariner Transposases.
J.Biol.Chem., 290, 2015
4MDB
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BU of 4mdb by Molmil
Structure of Mos1 transposase catalytic domain and Raltegravir with Mg
Descriptor: MAGNESIUM ION, Mariner Mos1 transposase, N-(4-fluorobenzyl)-5-hydroxy-1-methyl-2-(1-methyl-1-{[(5-methyl-1,3,4-oxadiazol-2-yl)carbonyl]amino}ethyl)-6-oxo-1,6-di hydropyrimidine-4-carboxamide
Authors:Richardson, J.M.
Deposit date:2013-08-22
Release date:2014-01-22
Last modified:2023-09-20
Method:X-RAY DIFFRACTION (1.7 Å)
Cite:Structural Basis of Mos1 Transposase Inhibition by the Anti-retroviral Drug Raltegravir.
Acs Chem.Biol., 9, 2014
4MDA
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BU of 4mda by Molmil
Structure of Mos1 transposase catalytic domain and Raltegravir with Mn
Descriptor: MANGANESE (II) ION, Mariner Mos1 transposase, N-(4-fluorobenzyl)-5-hydroxy-1-methyl-2-(1-methyl-1-{[(5-methyl-1,3,4-oxadiazol-2-yl)carbonyl]amino}ethyl)-6-oxo-1,6-di hydropyrimidine-4-carboxamide
Authors:Richardson, J.M.
Deposit date:2013-08-22
Release date:2014-01-22
Last modified:2023-09-20
Method:X-RAY DIFFRACTION (1.7 Å)
Cite:Structural Basis of Mos1 Transposase Inhibition by the Anti-retroviral Drug Raltegravir.
Acs Chem.Biol., 9, 2014
3HOT
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BU of 3hot by Molmil
Crystal structure of the Mos1 mariner paired end complex with Mn
Descriptor: MANGANESE (II) ION, Mos1 NTS inverted repeat DNA, Mos1 TS inverted repeat DNA, ...
Authors:Richardson, J.M, Walkinshaw, M.D.
Deposit date:2009-06-03
Release date:2009-09-22
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (3.25 Å)
Cite:Molecular architecture of the Mos1 paired-end complex: the structural basis of DNA transposition in a eukaryote
Cell(Cambridge,Mass.), 138, 2009
3HOS
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BU of 3hos by Molmil
Crystal structure of the mariner Mos1 paired end complex with Mg
Descriptor: MAGNESIUM ION, Mos1 NTS inverted repeat DNA, Mos1 TS inverted repeat DNA, ...
Authors:Richardson, J.M, Walkinshaw, M.D.
Deposit date:2009-06-03
Release date:2009-09-22
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (3.5 Å)
Cite:Molecular architecture of the Mos1 paired-end complex: the structural basis of DNA transposition in a eukaryote
Cell(Cambridge,Mass.), 138, 2009
3FWU
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BU of 3fwu by Molmil
Crystal structure of Leishmania major MIF1
Descriptor: Macrophage migration inhibitory factor-like protein
Authors:RIchardson, J.M, Walkinshaw, M.D.
Deposit date:2009-01-19
Release date:2009-03-24
Last modified:2023-09-06
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Structures of Leishmania major orthologues of macrophage migration inhibitory factor
Biochem.Biophys.Res.Commun., 380, 2009
1A62
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BU of 1a62 by Molmil
CRYSTAL STRUCTURE OF THE RNA-BINDING DOMAIN OF THE TRANSCRIPTIONAL TERMINATOR PROTEIN RHO
Descriptor: RHO
Authors:Allison, T.J, Wood, T.C, Briercheck, D.M, Rastinejad, F, Richardson, J.P, Rule, G.S.
Deposit date:1998-03-05
Release date:1998-06-17
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.55 Å)
Cite:Crystal structure of the RNA-binding domain from transcription termination factor rho.
Nat.Struct.Biol., 5, 1998
1A63
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BU of 1a63 by Molmil
THE NMR STRUCTURE OF THE RNA BINDING DOMAIN OF E.COLI RHO FACTOR SUGGESTS POSSIBLE RNA-PROTEIN INTERACTIONS, 10 STRUCTURES
Descriptor: RHO
Authors:Briercheck, D.M, Wood, T.C, Allison, T.J, Richardson, J.P, Rule, G.S.
Deposit date:1998-03-05
Release date:1998-05-27
Last modified:2024-04-10
Method:SOLUTION NMR
Cite:The NMR structure of the RNA binding domain of E. coli rho factor suggests possible RNA-protein interactions.
Nat.Struct.Biol., 5, 1998
4V9D
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BU of 4v9d by Molmil
Structures of the bacterial ribosome in classical and hybrid states of tRNA binding
Descriptor: 16S rRNA, 23S rRNA, 30S ribosomal protein S10, ...
Authors:Dunkle, J.A, Wang, L, Feldman, M.B, Pulk, A, Chen, V.B, Kapral, G.J, Noeske, J, Richardson, J.S, Blanchard, S.C, Cate, J.H.D.
Deposit date:2012-07-31
Release date:2014-07-09
Last modified:2023-09-20
Method:X-RAY DIFFRACTION (3 Å)
Cite:Structures of the bacterial ribosome in classical and hybrid states of tRNA binding.
Science, 332, 2011
1B6Z
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BU of 1b6z by Molmil
6-PYRUVOYL TETRAHYDROPTERIN SYNTHASE
Descriptor: 6-pyruvoyl tetrahydropterin synthase, ZINC ION
Authors:Ploom, T, Thoeny, B, Yim, J, Lee, S, Nar, H, Leimbacher, W, Huber, R, Richardson, J, Auerbach, G.
Deposit date:1999-01-18
Release date:2000-01-21
Last modified:2023-08-09
Method:X-RAY DIFFRACTION (2 Å)
Cite:Crystallographic and kinetic investigations on the mechanism of 6-pyruvoyl tetrahydropterin synthase.
J.Mol.Biol., 286, 1999
1B66
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BU of 1b66 by Molmil
6-PYRUVOYL TETRAHYDROPTERIN SYNTHASE
Descriptor: 6-PYRUVOYL TETRAHYDROPTERIN SYNTHASE, BIOPTERIN, ZINC ION
Authors:Ploom, T, Thoeny, B, Yim, J, Lee, S, Nar, H, Leimbacher, W, Huber, R, Richardson, J, Auerbach, G.
Deposit date:1999-01-20
Release date:1999-04-27
Last modified:2024-05-22
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Crystallographic and kinetic investigations on the mechanism of 6-pyruvoyl tetrahydropterin synthase.
J.Mol.Biol., 286, 1999
1SGW
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BU of 1sgw by Molmil
Putative ABC transporter (ATP-binding protein) from Pyrococcus furiosus Pfu-867808-001
Descriptor: CHLORIDE ION, SODIUM ION, putative ABC transporter
Authors:Liu, Z.J, Tempel, W, Shah, A, Chen, L, Lee, D, Kelley, L.-L.C, Dillard, B.D, Rose, J.P, Eneh, J.C, Hopkins, R.C, Jenney Jr, F.E, Lee, H.S, Poole II, F.L, Shah, C, Sugar, F.J, Adams, M.W.W, Richardson, D.C, Richardson, J.S, Wang, B.C, Southeast Collaboratory for Structural Genomics (SECSG)
Deposit date:2004-02-24
Release date:2004-08-10
Last modified:2024-02-14
Method:X-RAY DIFFRACTION (1.7 Å)
Cite:Putative ABC transporter (ATP-binding protein) from Pyrococcus furiosus Pfu-867808-001
To be Published
1TWL
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BU of 1twl by Molmil
Inorganic pyrophosphatase from Pyrococcus furiosus Pfu-264096-001
Descriptor: Inorganic pyrophosphatase
Authors:Zhou, W, Tempel, W, Liu, Z.-J, Chen, L, Clancy Kelley, L.-L, Dillard, B.D, Hopkins, R.C, Arendall III, W.B, Rose, J.P, Eneh, J.C, Hopkins, R.C, Jenney Jr, F.E, Lee, H.S, Li, T, Poole II, F.L, Shah, C, Sugar, F.J, Adams, M.W.W, Richardson, J.S, Richardson, D.C, Wang, B.-C, Southeast Collaboratory for Structural Genomics (SECSG)
Deposit date:2004-07-01
Release date:2004-11-23
Last modified:2023-08-23
Method:X-RAY DIFFRACTION (2.201 Å)
Cite:Inorganic pyrophosphatase from Pyrococcus furiosus Pfu-264096-001
To be published
1NNQ
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BU of 1nnq by Molmil
rubrerythrin from Pyrococcus furiosus Pfu-1210814
Descriptor: Rubrerythrin, ZINC ION
Authors:Liu, Z.-J, Tempel, W, Schubot, F.D, Shah, A, Arendall III, W.B, Rose, J.P, Richardson, D.C, Richardson, J.S, Wang, B.-C, Southeast Collaboratory for Structural Genomics (SECSG)
Deposit date:2003-01-14
Release date:2004-03-02
Last modified:2024-02-14
Method:X-RAY DIFFRACTION (2.35 Å)
Cite:Structural genomics of Pyrococcus furiosus: X-ray crystallography reveals 3D domain swapping in rubrerythrin
Proteins, 57, 2004
1SEN
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BU of 1sen by Molmil
Endoplasmic reticulum protein Rp19 O95881
Descriptor: CHLORIDE ION, PLATINUM (II) ION, Thioredoxin-like protein p19
Authors:Liu, Z.-J, Chen, L, Tempel, W, Shah, A, Lee, D, Dailey, T.A, Mayer, M.R, Rose, J.P, Richardson, D.C, Richardson, J.S, Dailey, H.A, Wang, B.-C, Southeast Collaboratory for Structural Genomics (SECSG)
Deposit date:2004-02-17
Release date:2004-07-13
Last modified:2017-10-11
Method:X-RAY DIFFRACTION (1.199 Å)
Cite:Endoplasmic reticulum protein Rp19
To be Published

 

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