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PDB: 79 results

7R2E
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BU of 7r2e by Molmil
Structure of human Senp7 with SUMO2
Descriptor: Sentrin-specific protease 7, Small ubiquitin-related modifier 3, prop-2-en-1-amine
Authors:Reverter, D, Li, Y.
Deposit date:2022-02-04
Release date:2022-12-07
Last modified:2024-02-07
Method:X-RAY DIFFRACTION (1.74 Å)
Cite:Structural Basis for the SUMO2 Isoform Specificity of SENP7.
J.Mol.Biol., 434, 2022
8RQI
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BU of 8rqi by Molmil
Structure of Rhizobium NopD with ubiquitin
Descriptor: NopD, Polyubiquitin-B, prop-2-en-1-amine
Authors:Reverter, D, Li, Y.
Deposit date:2024-01-18
Release date:2024-11-20
Method:X-RAY DIFFRACTION (1.94 Å)
Cite:Broad-spectrum ubiquitin/ubiquitin-like deconjugation activity of the rhizobial effector NopD from Bradyrhizobium (sp. XS1150).
Commun Biol, 7, 2024
6EOA
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BU of 6eoa by Molmil
Crystal Structure of HAL3 from Cryptococcus neoformans
Descriptor: FLAVIN MONONUCLEOTIDE, Phosphopantothenoylcysteine decarboxylase
Authors:Reverter, D, Zhang, C, Molero, C, Arino, J.
Deposit date:2017-10-09
Release date:2018-10-31
Last modified:2024-01-17
Method:X-RAY DIFFRACTION (2.18 Å)
Cite:Characterization of the atypical Ppz/Hal3 phosphatase system from the pathogenic fungus Cryptococcus neoformans.
Mol.Microbiol., 111, 2019
8OI3
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BU of 8oi3 by Molmil
Structure of NopD with AtSUMO2
Descriptor: Small ubiquitin-related modifier 2, Type III effector, prop-2-en-1-amine
Authors:Reverter, D, Li, Y.
Deposit date:2023-03-22
Release date:2024-04-03
Last modified:2024-10-16
Method:X-RAY DIFFRACTION (1.5 Å)
Cite:Broad-spectrum ubiquitin/ubiquitin-like deconjugation activity of the rhizobial effector NopD from Bradyrhizobium (sp. XS1150).
Commun Biol, 7, 2024
7P99
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BU of 7p99 by Molmil
Structure of human USPL1 in complex with SUMO2
Descriptor: SUMO-specific isopeptidase USPL1, Small ubiquitin-related modifier, ZINC ION
Authors:Reverter, D, Ying, L.
Deposit date:2021-07-26
Release date:2022-03-02
Last modified:2024-10-16
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Structural basis for the SUMO protease activity of the atypical ubiquitin-specific protease USPL1.
Nat Commun, 13, 2022
5A6I
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BU of 5a6i by Molmil
V122I Transthyretin structure in complex with Tolcalpone
Descriptor: TRANSTHYRETIN, Tolcapone
Authors:Reverter, D, Gallego, P, Santana, R, Ventura, S.
Deposit date:2015-06-26
Release date:2016-02-24
Last modified:2024-05-08
Method:X-RAY DIFFRACTION (1.86 Å)
Cite:Repositioning Tolcapone as a Potent Inhibitor of Transthyretin Amyloidogenesis and its Associated Cellular Toxicity
Nat.Commun., 7, 2016
1DTV
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BU of 1dtv by Molmil
NMR STRUCTURE OF THE LEECH CARBOXYPEPTIDASE INHIBITOR (LCI)
Descriptor: CARBOXYPEPTIDASE INHIBITOR
Authors:Reverter, D, Fernandez-Catalan, C, Bode, W, Holak, T.A, Aviles, F.X.
Deposit date:2000-01-13
Release date:2000-07-19
Last modified:2024-10-30
Method:SOLUTION NMR
Cite:Structure of a novel leech carboxypeptidase inhibitor determined free in solution and in complex with human carboxypeptidase A2.
Nat.Struct.Biol., 7, 2000
5O71
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BU of 5o71 by Molmil
Crystal structure of human USP25
Descriptor: Ubiquitin carboxyl-terminal hydrolase 25
Authors:Reverter, D, Liu, B.
Deposit date:2017-06-07
Release date:2018-06-20
Last modified:2024-05-08
Method:X-RAY DIFFRACTION (3.283 Å)
Cite:A quaternary tetramer assembly inhibits the deubiquitinating activity of USP25.
Nat Commun, 9, 2018
6RO9
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BU of 6ro9 by Molmil
Human spectrin SH3 domain D48G, E7V, K60V
Descriptor: Spectrin alpha, non-erythrocytic 1
Authors:Reverter, D, Navarro, S, Ventura, S.
Deposit date:2019-05-10
Release date:2020-06-03
Last modified:2024-01-24
Method:X-RAY DIFFRACTION (1.814 Å)
Cite:Human spectrin SH3 domain D48G, E7V, K60V
To Be Published
7AL8
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BU of 7al8 by Molmil
Structure of ATSI with bovine trypsin
Descriptor: CALCIUM ION, Cationic trypsin, SULFATE ION, ...
Authors:Reverter, D, Covaleda, G.
Deposit date:2020-10-05
Release date:2021-10-13
Last modified:2024-10-23
Method:X-RAY DIFFRACTION (2.85 Å)
Cite:Structure of ATSI with bovine trypsin
To Be Published
1DTD
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BU of 1dtd by Molmil
CRYSTAL STRUCTURE OF THE COMPLEX BETWEEN THE LEECH CARBOXYPEPTIDASE INHIBITOR AND THE HUMAN CARBOXYPEPTIDASE A2 (LCI-CPA2)
Descriptor: CARBOXYPEPTIDASE A2, GLUTAMIC ACID, METALLOCARBOXYPEPTIDASE INHIBITOR, ...
Authors:Reverter, D, Fernandez-Catalan, C, Bode, W, Holak, T.A, Aviles, F.X.
Deposit date:2000-01-12
Release date:2000-07-12
Last modified:2024-10-09
Method:X-RAY DIFFRACTION (1.65 Å)
Cite:Structure of a novel leech carboxypeptidase inhibitor determined free in solution and in complex with human carboxypeptidase A2.
Nat.Struct.Biol., 7, 2000
1Z5S
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BU of 1z5s by Molmil
Crystal structure of a complex between UBC9, SUMO-1, RANGAP1 and NUP358/RANBP2
Descriptor: Ran GTPase-activating protein 1, Ran-binding protein 2, Ubiquitin-conjugating enzyme E2 I, ...
Authors:Reverter, D, Lima, C.D.
Deposit date:2005-03-19
Release date:2005-06-07
Last modified:2024-10-16
Method:X-RAY DIFFRACTION (3.01 Å)
Cite:Insights into E3 ligase activity revealed by a SUMO-RanGAP1-Ubc9-Nup358 complex.
Nature, 435, 2005
1XT9
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BU of 1xt9 by Molmil
Crystal Structure of Den1 in complex with Nedd8
Descriptor: Neddylin, Sentrin-specific protease 8
Authors:Reverter, D, Wu, K, Erdene, T.G, Pan, Z.Q, Wilkinson, K.D, Lima, C.D.
Deposit date:2004-10-21
Release date:2004-12-21
Last modified:2024-10-09
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Structure of a Complex between Nedd8 and the Ulp/Senp Protease Family Member Den1.
J.Mol.Biol., 345, 2005
1TH0
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BU of 1th0 by Molmil
Structure of human Senp2
Descriptor: Sentrin-specific protease 2
Authors:Reverter, D, Lima, C.D.
Deposit date:2004-05-31
Release date:2004-09-14
Last modified:2023-08-23
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:A basis for SUMO protease specificity provided by analysis of human Senp2 and a Senp2-SUMO complex
Structure, 12, 2004
1TGZ
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BU of 1tgz by Molmil
Structure of human Senp2 in complex with SUMO-1
Descriptor: SULFATE ION, Sentrin-specific protease 2, Ubiquitin-like protein SMT3C
Authors:Reverter, D, Lima, C.D.
Deposit date:2004-05-31
Release date:2004-09-14
Last modified:2024-10-09
Method:X-RAY DIFFRACTION (2.8 Å)
Cite:A basis for SUMO protease specificity provided by analysis of human Senp2 and a Senp2-SUMO complex
Structure, 12, 2004
2IO2
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BU of 2io2 by Molmil
Crystal structure of human Senp2 in complex with RanGAP1-SUMO-1
Descriptor: Ran GTPase-activating protein 1, Sentrin-specific protease 2, Small ubiquitin-related modifier 1
Authors:Reverter, D, Lima, C.D.
Deposit date:2006-10-09
Release date:2006-11-21
Last modified:2023-08-30
Method:X-RAY DIFFRACTION (2.9 Å)
Cite:Structural basis for SENP2 protease interactions with SUMO precursors and conjugated substrates.
Nat.Struct.Mol.Biol., 13, 2006
2IO1
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BU of 2io1 by Molmil
Crystal structure of human Senp2 in complex with preSUMO-3
Descriptor: Sentrin-specific protease 2, Small ubiquitin-related modifier 3 precursor
Authors:Reverter, D, Lima, C.D.
Deposit date:2006-10-09
Release date:2006-11-14
Last modified:2023-08-30
Method:X-RAY DIFFRACTION (2.6 Å)
Cite:Structural basis for SENP2 protease interactions with SUMO precursors and conjugated substrates.
Nat.Struct.Mol.Biol., 13, 2006
2IO0
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BU of 2io0 by Molmil
Crystal structure of human Senp2 in complex with preSUMO-2
Descriptor: SULFATE ION, Sentrin-specific protease 2, Small ubiquitin-related modifier 2 precursor
Authors:Reverter, D, Lima, C.D.
Deposit date:2006-10-09
Release date:2006-11-14
Last modified:2023-08-30
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Structural basis for SENP2 protease interactions with SUMO precursors and conjugated substrates.
Nat.Struct.Mol.Biol., 13, 2006
2IO3
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BU of 2io3 by Molmil
Crystal structure of human Senp2 in complex with RanGAP1-SUMO-2
Descriptor: Ran GTPase-activating protein 1, Sentrin-specific protease 2, Small ubiquitin-related modifier 2
Authors:Reverter, D, Lima, C.D.
Deposit date:2006-10-09
Release date:2006-11-14
Last modified:2023-08-30
Method:X-RAY DIFFRACTION (3.2 Å)
Cite:Structural basis for SENP2 protease interactions with SUMO precursors and conjugated substrates.
Nat.Struct.Mol.Biol., 13, 2006
7P47
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BU of 7p47 by Molmil
Structure of the E3 ligase Smc5/Nse2 in complex with Ubc9-SUMO thioester mimetic
Descriptor: E3 SUMO-protein ligase MMS21, SUMO-conjugating enzyme UBC9, Structural maintenance of chromosomes protein 5, ...
Authors:Lascorz, J, Varejao, N, Reverter, D.
Deposit date:2021-07-09
Release date:2021-11-24
Last modified:2024-01-31
Method:X-RAY DIFFRACTION (3.314 Å)
Cite:Structural basis for the E3 ligase activity enhancement of yeast Nse2 by SUMO-interacting motifs.
Nat Commun, 12, 2021
6FWW
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BU of 6fww by Molmil
GFP/KKK. A redesigned GFP with improved solubility
Descriptor: Green fluorescent protein
Authors:Varejao, N, Lascorz, J, Gil-Garcia, M, Diaz-Caballero, M, Navarro, S, Ventura, S, Reverter, D.
Deposit date:2018-03-07
Release date:2018-08-01
Last modified:2024-11-13
Method:X-RAY DIFFRACTION (1.131 Å)
Cite:Combining Structural Aggregation Propensity and Stability Predictions To Redesign Protein Solubility.
Mol. Pharm., 15, 2018
8PM8
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BU of 8pm8 by Molmil
V30M Transthyretin structure in complex with Tolcalpone
Descriptor: Tolcapone, Transthyretin
Authors:Varejao, N, Pinheiro, F, Pallares, I, Ventura, S, Reverter, D.
Deposit date:2023-06-28
Release date:2024-05-08
Method:X-RAY DIFFRACTION (1.57 Å)
Cite:PITB: A high affinity transthyretin aggregation inhibitor with optimal pharmacokinetic properties.
Eur.J.Med.Chem., 261, 2023
8PMO
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BU of 8pmo by Molmil
Crystal structure of human V122I transthyretin in complex with PITB (Pharmacokinetically Improved TTR Binder)
Descriptor: (3-fluoranyl-5-oxidanyl-phenyl)-(3-methoxy-5-nitro-4-oxidanyl-phenyl)methanone, Transthyretin
Authors:Varejao, N, Pinheiro, F, Pallares, I, Ventura, S, Reverter, D.
Deposit date:2023-06-29
Release date:2024-05-08
Method:X-RAY DIFFRACTION (1.24 Å)
Cite:PITB: A high affinity transthyretin aggregation inhibitor with optimal pharmacokinetic properties.
Eur.J.Med.Chem., 261, 2023
8PMA
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BU of 8pma by Molmil
Crystal structure of human V30M transthyretin in complex with PITB (Pharmacokinetically Improved TTR Binder)
Descriptor: (3-fluoranyl-5-oxidanyl-phenyl)-(3-methoxy-5-nitro-4-oxidanyl-phenyl)methanone, Transthyretin
Authors:Varejao, N, Pinheiro, F, Pallares, I, Ventura, S, Reverter, D.
Deposit date:2023-06-28
Release date:2024-05-08
Method:X-RAY DIFFRACTION (1.2 Å)
Cite:PITB: A high affinity transthyretin aggregation inhibitor with optimal pharmacokinetic properties.
Eur.J.Med.Chem., 261, 2023
8BQ3
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BU of 8bq3 by Molmil
Crystal structure of human R13 mutant of the c-Src SH3 domain in complex with VSL12-peptide
Descriptor: PRO-LEU-PRO, Proto-oncogene tyrosine-protein kinase Src
Authors:Varejao, N, Navarro, S, Ventura, S, Reverter, D.
Deposit date:2022-11-18
Release date:2023-11-29
Method:X-RAY DIFFRACTION (2.66 Å)
Cite:Crystal structure of human R13 mutant of the c-Src SH3 domain in complex with VSL12-peptide
To Be Published

 

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