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PDB: 522 results

2NS7
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How an in vitro selected peptide mimics the antibiotic tetracycline to induce TET repressor
Descriptor: Tetracycline repressor protein
Authors:Luckner, S.R, Klotzsche, M, Berens, C, Hillen, W, Muller, Y.A.
Deposit date:2006-11-03
Release date:2007-07-24
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:How an agonist peptide mimics the antibiotic tetracycline to induce Tet-repressor
J.Mol.Biol., 368, 2007
4XHM
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Archaeoglobus fulgidus thioredoxin 3 M60H
Descriptor: Thioredoxin (Trx-3)
Authors:Dey, M, Bjork, R.E, Drennan, C.L.
Deposit date:2015-01-05
Release date:2015-04-29
Last modified:2024-10-16
Method:X-RAY DIFFRACTION (1.95 Å)
Cite:Rheostat Re-Wired: Alternative Hypotheses for the Control of Thioredoxin Reduction Potentials.
Plos One, 10
2NS8
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How an in vitro selected peptide mimics the antibiotic tetracycline to induce TET repressor
Descriptor: 16 residue peptide Tip (Transcription inducing peptide), Tetracycline repressor protein
Authors:Luckner, S.R, Klotzsche, M, Berens, C, Hillen, W, Muller, Y.A.
Deposit date:2006-11-03
Release date:2007-07-24
Last modified:2024-10-30
Method:X-RAY DIFFRACTION (2.55 Å)
Cite:How an agonist peptide mimics the antibiotic tetracycline to induce Tet-repressor
J.Mol.Biol., 368, 2007
1PF3
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Crystal Structure of the M441L mutant of the multicopper oxidase CueO
Descriptor: Blue copper oxidase cueO, COPPER (II) ION, CU-CL-CU LINKAGE
Authors:Roberts, S.A, Wildner, G.F, Grass, G, Weichsel, A, Ambrus, A, Rensing, C, Montfort, W.R.
Deposit date:2003-05-23
Release date:2003-06-24
Last modified:2023-08-16
Method:X-RAY DIFFRACTION (1.5 Å)
Cite:A Labile Regulatory Copper Ion Lies Near the T1 Copper Site in the Multicopper Oxidase CueO.
J.Biol.Chem., 278, 2003
3UXU
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The structure of the catalytic domain of the Sulfolobus Spindle-shaped viral integrase reveals an evolutionarily conserved catalytic core and supports a mechanism of DNA cleavage in trans
Descriptor: PHOSPHATE ION, Probable integrase
Authors:Eilers, B.J, Young, M.J, Lawrence, C.M.
Deposit date:2011-12-05
Release date:2012-05-16
Last modified:2024-10-16
Method:X-RAY DIFFRACTION (2.706 Å)
Cite:The Structure of an Archaeal Viral Integrase Reveals an Evolutionarily Conserved Catalytic Core yet Supports a Mechanism of DNA Cleavage in trans.
J.Virol., 86, 2012
1R3M
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Crystal structure of the dimeric unswapped form of bovine seminal ribonuclease
Descriptor: PHOSPHATE ION, Ribonuclease, seminal
Authors:Berisio, R, Sica, F, De Lorenzo, C, Di Fiore, A, Piccoli, R, Zagari, A, Mazzarella, L.
Deposit date:2003-10-02
Release date:2003-11-18
Last modified:2023-08-23
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Crystal structure of the dimeric unswapped form of bovine seminal ribonuclease
Febs Lett., 554, 2003
3NAG
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BU of 3nag by Molmil
Crystal structure of the phosphoribosylpyrophosphate (PRPP) synthetase from Thermoplasma Volcanium in complex with ADP
Descriptor: ADENOSINE-5'-DIPHOSPHATE, MAGNESIUM ION, Ribose-phosphate pyrophosphokinase, ...
Authors:Cherney, M.M, Cherney, L.T, Garen, C.R, James, M.N.G.
Deposit date:2010-06-02
Release date:2011-06-08
Last modified:2024-02-21
Method:X-RAY DIFFRACTION (1.75 Å)
Cite:The structures of Thermoplasma volcanium phosphoribosyl pyrophosphate synthetase bound to ribose-5-phosphate and ATP analogs.
J.Mol.Biol., 413, 2011
2NQT
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Crystal structure of N-Acetyl-gamma-Glutamyl-Phosphate Reductase (Rv1652) from Mycobacterium tuberculosis at 1.58 A resolution
Descriptor: N-acetyl-gamma-glutamyl-phosphate reductase
Authors:Cherney, L.T, Cherney, M.M, Garen, C.R, Moraidin, F, James, M.N.G, TB Structural Genomics Consortium (TBSGC)
Deposit date:2006-10-31
Release date:2006-11-28
Last modified:2023-12-27
Method:X-RAY DIFFRACTION (1.58 Å)
Cite:Crystal Structure of N-acetyl-gamma-glutamyl-phosphate Reductase from Mycobacterium tuberculosis in Complex with NADP(+).
J.Mol.Biol., 367, 2007
2OGY
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Asn199Ala Mutant of the 5-methyltetrahydrofolate corrinoid/iron sulfur protein methyltransferase complexed with methyltetrahydrofolate to 2.3 Angstrom resolution
Descriptor: 5-METHYL-5,6,7,8-TETRAHYDROFOLIC ACID, 5-methyltetrahydrofolate corrinoid/iron sulfur protein methyltransferase, CALCIUM ION
Authors:Doukov, T.I, Drennan, C.L, Hemmi, H, Ragsdale, S.W.
Deposit date:2007-01-09
Release date:2007-01-23
Last modified:2023-08-30
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Structural and kinetic evidence for an extended hydrogen-bonding network in catalysis of methyl group transfer. Role of an active site asparagine residue in activation of methyl transfer by methyltransferases.
J.Biol.Chem., 282, 2007
2W8M
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Structure of D212, a nuclease from a fusselovirus.
Descriptor: ORF D212
Authors:Menon, S.K, Young, M.J, Lawrence, C.M.
Deposit date:2009-01-17
Release date:2009-02-03
Last modified:2024-05-08
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:The crystal structure of D212 from sulfolobus spindle-shaped virus ragged hills reveals a new member of the PD-(D/E)XK nuclease superfamily.
J. Virol., 84, 2010
2Z76
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X-ray crystal structure of RV0760c from Mycobacterium tuberculosis at 1.82 Angstrom resolution
Descriptor: (4S)-2-METHYL-2,4-PENTANEDIOL, ACETATE ION, LAURYL DIMETHYLAMINE-N-OXIDE, ...
Authors:Cherney, M.M, Garen, C.R, James, M.N.G, TB Structural Genomics Consortium (TBSGC)
Deposit date:2007-08-16
Release date:2007-09-18
Last modified:2023-08-30
Method:X-RAY DIFFRACTION (1.82 Å)
Cite:Crystal structure of Mycobacterium tuberculosis Rv0760c at 1.50 A resolution, a structural homolog of Delta(5)-3-ketosteroid isomerase.
Biochim.Biophys.Acta, 1784, 2008
2ASF
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Crystal structure of the conserved hypothetical protein Rv2074 from Mycobacterium tuberculosis 1.6 A
Descriptor: CITRIC ACID, Hypothetical protein Rv2074, SODIUM ION
Authors:Biswal, B.K, Au, K, Cherney, M.M, Garen, C, James, M.N, TB Structural Genomics Consortium (TBSGC)
Deposit date:2005-08-23
Release date:2005-10-11
Last modified:2024-10-23
Method:X-RAY DIFFRACTION (1.6 Å)
Cite:The molecular structure of Rv2074, a probable pyridoxine 5'-phosphate oxidase from Mycobacterium tuberculosis, at 1.6 angstroms resolution.
Acta Crystallogr.,Sect.F, 62, 2006
1L1L
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CRYSTAL STRUCTURE OF B-12 DEPENDENT (CLASS II) RIBONUCLEOTIDE REDUCTASE
Descriptor: RIBONUCLEOSIDE TRIPHOSPHATE REDUCTASE
Authors:Sintchak, M.D, Arjara, G, Kellogg, B.A, Stubbe, J, Drennan, C.L.
Deposit date:2002-02-18
Release date:2002-04-10
Last modified:2024-10-16
Method:X-RAY DIFFRACTION (1.75 Å)
Cite:The crystal structure of class II ribonucleotide reductase reveals how an allosterically regulated monomer mimics a dimer.
Nat.Struct.Biol., 9, 2002
1BOE
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BU of 1boe by Molmil
STRUCTURE OF THE IGF BINDING DOMAIN OF THE INSULIN-LIKE GROWTH FACTOR-BINDING PROTEIN-5 (IGFBP-5): IMPLICATIONS FOR IGF AND IGF-I RECEPTOR INTERACTIONS
Descriptor: PROTEIN (INSULIN-LIKE GROWTH FACTOR-BINDING PROTEIN-5 (IGFBP-5))
Authors:Kalus, W, Zweckstetter, M, Renner, C, Sanchez, Y, Georgescu, J, Grol, M, Demuth, D, Schumacherdony, C, Lang, K, Holak, T.H.
Deposit date:1998-07-30
Release date:1998-12-16
Last modified:2022-02-16
Method:SOLUTION NMR
Cite:Structure of the IGF-binding domain of the insulin-like growth factor-binding protein-5 (IGFBP-5): implications for IGF and IGF-I receptor interactions.
EMBO J., 17, 1998
2P0E
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Human nicotinamide riboside kinase 1 in complex with tiazofurin
Descriptor: (1R)-1-[4-(AMINOCARBONYL)-1,3-THIAZOL-2-YL]-1,4-ANHYDRO-D-RIBITOL, CHLORIDE ION, Nicotinamide riboside kinase 1, ...
Authors:Rabeh, W.M, Tempel, W, Nedyalkova, L, Landry, R, Arrowsmith, C.H, Edwards, A.M, Sundstrom, M, Weigelt, J, Bochkarev, A, Brenner, C, Park, H, Structural Genomics Consortium (SGC)
Deposit date:2007-02-28
Release date:2007-05-08
Last modified:2024-04-03
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Nicotinamide Riboside Kinase Structures Reveal New Pathways to NAD(+).
Plos Biol., 5, 2007
1SKV
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BU of 1skv by Molmil
Crystal Structure of D-63 from Sulfolobus Spindle Virus 1
Descriptor: Hypothetical 7.5 kDa protein
Authors:Kraft, P, Kummel, D, Oeckinghaus, A, Gauss, G.H, Wiedenheft, B, Young, M, Lawrence, C.M.
Deposit date:2004-03-05
Release date:2004-07-13
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.6 Å)
Cite:Structure of d-63 from sulfolobus spindle-shaped virus 1: surface properties of the dimeric four-helix bundle suggest an adaptor protein function
J.Virol., 78, 2004
1ZSH
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Crystal structure of bovine arrestin-2 in complex with inositol hexakisphosphate (IP6)
Descriptor: Beta-arrestin 1, INOSITOL HEXAKISPHOSPHATE, MAGNESIUM ION
Authors:Milano, S.K, Kim, Y.M, Stefano, F.P, Benovic, J.L, Brenner, C.
Deposit date:2005-05-24
Release date:2006-01-31
Last modified:2023-08-23
Method:X-RAY DIFFRACTION (2.9 Å)
Cite:Nonvisual arrestin oligomerization and cellular localization are regulated by inositol hexakisphosphate binding
J.Biol.Chem., 281, 2006
1ZPX
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BU of 1zpx by Molmil
NMR Structure of Mcol1-[13-33] from Hydra
Descriptor: mini-collagen
Authors:Milbradt, A.G, Boulegue, C, Moroder, L, Renner, C.
Deposit date:2005-05-18
Release date:2005-11-15
Last modified:2024-10-16
Method:SOLUTION NMR
Cite:The Two Cysteine-rich Head Domains of Minicollagen from Hydra Nematocysts Differ in their Cystine Framework and Overall Fold Despite an Identical Cysteine Sequence Pattern.
J.Mol.Biol., 354, 2005
2CLB
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BU of 2clb by Molmil
The structure of the DPS-like protein from Sulfolobus solfataricus reveals a bacterioferritin-like di-metal binding site within a Dps- like dodecameric assembly
Descriptor: DPS-LIKE PROTEIN, FE (III) ION, ZINC ION
Authors:Gauss, G.H, Benas, P, Wiedenheft, B, Young, M, Douglas, T, Lawrence, C.M.
Deposit date:2006-04-26
Release date:2006-07-17
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:Structure of the Dps-Like Protein from Sulfolobus Solfataricus Reveals a Bacterioferritin-Like Dimetal Binding Site within a Dps-Like Dodecameric Assembly.
Biochemistry, 45, 2006
6WTE
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Structure of radical S-adenosylmethionine methyltransferase, TsrM, from Kitasatospora setae with cobalamin and [4Fe-4S] cluster bound
Descriptor: 1,2-ETHANEDIOL, B12-binding domain-containing protein, COBALAMIN, ...
Authors:Knox, H.L, Chen, P.Y.-T, Drennan, C.L, Booker, S.J.
Deposit date:2020-05-02
Release date:2020-12-23
Last modified:2024-03-06
Method:X-RAY DIFFRACTION (1.67 Å)
Cite:Structural basis for non-radical catalysis by TsrM, a radical SAM methylase.
Nat.Chem.Biol., 17, 2021
5TK6
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Structure of the HD-domain phosphohydrolase OxsA with Oxetanocin-A diphosphate bound
Descriptor: MAGNESIUM ION, OxsA protein, [(2S,3R,4R)-4-(6-amino-9H-purin-9-yl)-3-(hydroxymethyl)oxetan-2-yl]methyl trihydrogen diphosphate
Authors:Bridwell-Rabb, J, Drennan, C.L.
Deposit date:2016-10-06
Release date:2016-11-23
Last modified:2023-10-04
Method:X-RAY DIFFRACTION (1.924 Å)
Cite:An HD domain phosphohydrolase active site tailored for oxetanocin-A biosynthesis.
Proc. Natl. Acad. Sci. U.S.A., 113, 2016
6WTF
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Structure of radical S-adenosylmethionine methyltransferase, TsrM, from Kitasatospora setae with tryptophan substrate and SAM analog (aza-SAM) bound
Descriptor: COBALAMIN, IRON/SULFUR CLUSTER, S-5'-AZAMETHIONINE-5'-DEOXYADENOSINE, ...
Authors:Knox, H.L, Chen, P.Y.-T, Drennan, C.L, Booker, S.J.
Deposit date:2020-05-02
Release date:2020-12-23
Last modified:2023-10-18
Method:X-RAY DIFFRACTION (2.19 Å)
Cite:Structural basis for non-radical catalysis by TsrM, a radical SAM methylase.
Nat.Chem.Biol., 17, 2021
5FTO
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Crystal structure of the ALK kinase domain in complex with Entrectinib
Descriptor: ALK TYROSINE KINASE RECEPTOR, Entrectinib
Authors:Bossi, R, Canevari, G, Fasolini, M, Menichincheri, M, Ardini, E, Magnaghi, P, Avanzi, N, Banfi, P, Buffa, L, Ceriani, L, Colombo, M, Corti, L, Donati, D, Felder, E, Fiorelli, C, Fiorentini, F, Galvani, A, Isacchi, A, Lombardi Borgia, A, Marchionni, C, Nesi, M, Orrenius, C, Panzeri, A, Perrone, E, Pesenti, E, Rusconi, L, Saccardo, M.B, Vanotti, E, Orsini, P.
Deposit date:2016-01-14
Release date:2016-04-06
Last modified:2024-01-10
Method:X-RAY DIFFRACTION (2.22 Å)
Cite:Discovery of Entrectinib: A New 3-Aminoindazole as a Potent Anaplastic Lymphoma Kinase (Alk), C-Ros Oncogene 1 Kinase (Ros1), and Pan-Tropomyosin Receptor Kinases (Pan-Trks) Inhibitor.
J.Med.Chem., 59, 2016
5TK9
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Structure of the HD-domain phosphohydrolase OxsA with Oxetanocin-A bound
Descriptor: MAGNESIUM ION, OxsA protein, [(2S,3R,4R)-4-(6-amino-9H-purin-9-yl)oxetane-2,3-diyl]dimethanol
Authors:Bridwell-Rabb, J, Drennan, C.L.
Deposit date:2016-10-06
Release date:2016-11-16
Last modified:2024-03-06
Method:X-RAY DIFFRACTION (1.843 Å)
Cite:An HD domain phosphohydrolase active site tailored for oxetanocin-A biosynthesis.
Proc. Natl. Acad. Sci. U.S.A., 113, 2016
5TK8
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Structure of the HD-domain phosphohydrolase OxsA with Oxetanocin-A monophosphate bound
Descriptor: MAGNESIUM ION, OxsA protein, [(2S,3R,4R)-4-(6-amino-9H-purin-9-yl)-3-(hydroxymethyl)oxetan-2-yl]methyl dihydrogen phosphate
Authors:Bridwell-Rabb, J, Drennan, C.L.
Deposit date:2016-10-06
Release date:2016-11-16
Last modified:2023-10-04
Method:X-RAY DIFFRACTION (1.64 Å)
Cite:An HD domain phosphohydrolase active site tailored for oxetanocin-A biosynthesis.
Proc. Natl. Acad. Sci. U.S.A., 113, 2016

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