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PDB: 92 results

5U0E
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Identification of a New Zinc Binding Chemotype by Fragment Screening
Descriptor: (5R)-5-benzyl-2-sulfanylidene-1,3-thiazolidin-4-one, 1,2-ETHANEDIOL, Carbonic anhydrase 2, ...
Authors:Peat, T.S, Poulsen, S.A, Ren, B, Dolezal, O, Woods, L.A, Mujumdar, P, Chrysanthopoulos, P.K.
Deposit date:2016-11-23
Release date:2017-08-30
Last modified:2023-10-04
Method:X-RAY DIFFRACTION (1.27 Å)
Cite:Identification of a New Zinc Binding Chemotype by Fragment Screening.
J. Med. Chem., 60, 2017
5U0D
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BU of 5u0d by Molmil
Identification of a New Zinc Binding Chemotype by Fragment Screening
Descriptor: (5R)-5-(2,4-dimethoxyphenyl)-2-sulfanylidene-1,3-oxazolidin-4-one, Carbonic anhydrase 2, GLYCEROL, ...
Authors:Peat, T.S, Poulsen, S.A, Ren, B, Dolezal, O, Woods, L.A, Mujumdar, P, Chrysanthopoulos, P.K.
Deposit date:2016-11-23
Release date:2017-08-30
Last modified:2023-10-04
Method:X-RAY DIFFRACTION (1.59 Å)
Cite:Identification of a New Zinc Binding Chemotype by Fragment Screening.
J. Med. Chem., 60, 2017
5TY8
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Identification of a New Zinc Binding Chemotype by Fragment Screening
Descriptor: (5R)-5-phenyl-1,3-oxazolidine-2,4-dione, Carbonic anhydrase 2, ZINC ION
Authors:Peat, T.S, Poulsen, S.A, Ren, B, Dolezal, O, Woods, L.A, Mujumdar, P, Chrysanthopoulos, P.K.
Deposit date:2016-11-18
Release date:2017-08-30
Last modified:2023-10-04
Method:X-RAY DIFFRACTION (1.45 Å)
Cite:Identification of a New Zinc Binding Chemotype by Fragment Screening.
J. Med. Chem., 60, 2017
5G47
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BU of 5g47 by Molmil
Structure of Gc glycoprotein from severe fever with thrombocytopenia syndrome virus in the trimeric postfusion conformation
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, CHLORIDE ION, SFTSV GC
Authors:Halldorsson, S, Behrens, A.J, Harlos, K, Huiskonen, J.T, Elliott, R.M, Crispin, M, Brennan, B, Bowden, T.A.
Deposit date:2016-05-05
Release date:2016-07-06
Last modified:2024-10-09
Method:X-RAY DIFFRACTION (2.45 Å)
Cite:Structure of a Phleboviral Envelope Glycoprotein Reveals a Consolidated Model of Membrane Fusion.
Proc.Natl.Acad.Sci.USA, 113, 2016
2RDF
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BU of 2rdf by Molmil
Crystal Structure of staphyloccocal nuclease VIAGAN/E75A variant at cryogenic temperature
Descriptor: PHOSPHATE ION, Thermonuclease
Authors:Baran, K, Schlessman, J.L, Garcia-Moreno, B.E.
Deposit date:2007-09-22
Release date:2008-06-10
Last modified:2023-08-30
Method:X-RAY DIFFRACTION (2.01 Å)
Cite:Electrostatic effects in a network of polar and ionizable groups in staphylococcal nuclease.
J.Mol.Biol., 379, 2008
1JFQ
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BU of 1jfq by Molmil
ANTIGEN-BINDING FRAGMENT OF THE MURINE ANTI-PHENYLARSONATE ANTIBODY 36-71, "FAB 36-71"
Descriptor: ANTIGEN-BINDING FRAGMENT OF ANTI-PHENYLARSONATE ANTIBODY
Authors:Parhami-Seren, B, Viswanathan, M, Strong, R.K, Margolies, M.N.
Deposit date:2001-06-21
Release date:2002-02-27
Last modified:2023-08-16
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Structural analysis of mutants of high-affinity and low-affinity p-azophenylarsonate-specific antibodies generated by alanine scanning of heavy chain complementarity-determining region 2.
J.Immunol., 167, 2001
3HZX
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BU of 3hzx by Molmil
Crystal Structure of Staphylococcal nuclease variant D+PHS/V66K at pH 9 determined at 100 K
Descriptor: CALCIUM ION, THYMIDINE-3',5'-DIPHOSPHATE, Thermonuclease
Authors:Schlessman, J.L, De Luca-Westrate, J.N, Garcia-Moreno, B.E.
Deposit date:2009-06-24
Release date:2010-05-19
Last modified:2023-09-06
Method:X-RAY DIFFRACTION (2 Å)
Cite:Structure of Staphylococcal nuclease D+PHS/V66K reveals internal hydration in protein cavity
To be Published
3BDC
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BU of 3bdc by Molmil
Crystal structure of Staphylococcal nuclease variant Delta+PHS at cryogenic temperature
Descriptor: CALCIUM ION, THYMIDINE-3',5'-DIPHOSPHATE, Thermonuclease
Authors:Khangulov, V, Schlessman, J.L, Garcia-Moreno, B.E.
Deposit date:2007-11-14
Release date:2008-11-04
Last modified:2023-08-30
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Molecular determinants of the pK(a) values of Asp and Glu residues in staphylococcal nuclease.
Proteins, 77, 2009
5FLU
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BU of 5flu by Molmil
Structure of a Chaperone-Usher pilus reveals the molecular basis of rod uncoilin
Descriptor: PAP FIMBRIAL MAJOR PILIN PROTEIN
Authors:Hospenthal, M.K, Redzej, A, Dodson, K, Ukleja, M, Frenz, B, Hultgren, S.J, DiMaio, F, Egelman, E.H, Waksman, G.
Deposit date:2015-10-28
Release date:2016-01-13
Last modified:2024-10-16
Method:ELECTRON MICROSCOPY (3.8 Å)
Cite:Structure of a Chaperone-Usher Pilus Reveals the Molecular Basis of Rod Uncoiling.
Cell(Cambridge,Mass.), 164, 2016
1U9R
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BU of 1u9r by Molmil
Crystal Structure of Staphylococcal Nuclease mutant V66E/P117G/H124L/S128A at Room Temperature
Descriptor: Thermonuclease
Authors:Denisov, V.P, Schlessman, J.L, Garcia-Moreno, B.E, Halle, B.
Deposit date:2004-08-10
Release date:2004-12-21
Last modified:2024-04-03
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Stabilization of internal charges in a protein: water penetration or conformational change?
Biophys.J., 87, 2004
1SNJ
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BU of 1snj by Molmil
Solution structure of the DNA three-way junction with the A/C-stacked conformation
Descriptor: 36-MER
Authors:Wu, B, Girard, F, van Buuren, B, Schleucher, J, Tessari, M, Wijmenga, S.
Deposit date:2004-03-11
Release date:2005-04-05
Last modified:2024-05-22
Method:SOLUTION NMR
Cite:Global structure of a DNA three-way junction by solution NMR: towards prediction of 3H fold.
Nucleic Acids Res., 32, 2004
5V4S
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BU of 5v4s by Molmil
CryoEM Structure of a Prokaryotic Cyclic Nucleotide-Gated Ion Channel
Descriptor: Transporter, cation channel family / cyclic nucleotide-binding domain multi-domain protein
Authors:James, Z.M, Borst, A.J, Haitin, Y, Frenz, B, DiMaio, F, Zagotta, W.N, Veesler, D.
Deposit date:2017-03-10
Release date:2017-04-12
Last modified:2024-03-13
Method:ELECTRON MICROSCOPY (4.2 Å)
Cite:CryoEM structure of a prokaryotic cyclic nucleotide-gated ion channel.
Proc. Natl. Acad. Sci. U.S.A., 114, 2017
2QDB
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BU of 2qdb by Molmil
Crystal structure of staphylococcal nuclease variant E75Q/D21N/T33V/T41I/S59A/P117G/S128A at 100 K
Descriptor: PHOSPHATE ION, Thermonuclease
Authors:Baran, K.L, Schlessman, J.L, Garcia-Moreno, B.E.
Deposit date:2007-06-20
Release date:2008-07-01
Last modified:2023-08-30
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Electrostatic effects in a network of polar and ionizable groups in staphylococcal nuclease.
J.Mol.Biol., 379, 2008
4B5Q
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BU of 4b5q by Molmil
The lytic polysaccharide monooxygenase GH61D structure from the basidiomycota fungus Phanerochaete chrysosporium
Descriptor: COPPER (II) ION, GLYCEROL, GLYCOSIDE HYDROLASE FAMILY 61 PROTEIN D, ...
Authors:Wu, M, Beckham, G.T, Larsson, A.M, Ishida, T, Kim, S, Crowley, M.F, Payne, C.M, Horn, S.J, Westereng, B, Stahlberg, J, Eijsink, V.G.H, Sandgren, M.
Deposit date:2012-08-07
Release date:2013-04-03
Last modified:2023-12-20
Method:X-RAY DIFFRACTION (1.75 Å)
Cite:Crystal Structure and Computational Characterization of the Lytic Polysaccharide Monooxygenase Gh61D from the Basidiomycota Fungus Phanerochaete Chrysosporium
J.Biol.Chem., 288, 2013
2JJ9
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BU of 2jj9 by Molmil
Crystal structure of myosin-2 in complex with ADP-metavanadate
Descriptor: ADP METAVANADATE, MAGNESIUM ION, MYOSIN-2 HEAVY CHAIN
Authors:Fedorov, R, Boehl, M, Tsiavaliaris, G, Hartmann, F.K, Baruch, P, Brenner, B, Martin, R, Knoelker, H.J, Gutzeit, H.O, Manstein, D.J.
Deposit date:2008-03-25
Release date:2009-01-13
Last modified:2023-12-13
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:The Mechanism of Pentabromopseudilin Inhibition of Myosin Motor Activity.
Nat.Struct.Mol.Biol., 16, 2009
2ILT
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BU of 2ilt by Molmil
Human 11-beta-Hydroxysteroid Dehydrogenase (HSD1) with NADP and Adamantane Sulfone Inhibitor
Descriptor: 2-(2-CHLORO-4-FLUOROPHENOXY)-2-METHYL-N-[(1R,2S,3S,5S,7S)-5-(METHYLSULFONYL)-2-ADAMANTYL]PROPANAMIDE, Corticosteroid 11-beta-dehydrogenase isozyme 1, NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE, ...
Authors:Longenecker, K.L, Sorensen, B, Judge, R, Qin, W, Link, J.T.
Deposit date:2006-10-03
Release date:2007-04-03
Last modified:2024-02-21
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Adamantane sulfone and sulfonamide 11-beta-HSD1 Inhibitors.
Bioorg.Med.Chem.Lett., 17, 2007
2HQW
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BU of 2hqw by Molmil
Crystal Structure of Ca2+/Calmodulin bound to NMDA Receptor NR1C1 peptide
Descriptor: CALCIUM ION, Calmodulin, Glutamate NMDA receptor subunit zeta 1
Authors:Akyol, Z, Gakhar, L, Sorensen, B.R, Hell, J.H, Shea, M.A.
Deposit date:2006-07-19
Release date:2007-11-13
Last modified:2024-02-14
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:The NMDA Receptor NR1 C1 Region Bound to Calmodulin: Structural Insights into Functional Differences between Homologous Domains.
Structure, 15, 2007
2L4L
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BU of 2l4l by Molmil
Structural insights into the cTAR DNA recognition by the HIV-1 Nucleocapsid protein: role of sugar deoxyriboses in the binding polarity of NC
Descriptor: 5'-D(*CP*TP*GP*G)-3', HIV-1 nucleocapsid protein NCp7, ZINC ION
Authors:Bazzi, A, Zargarian, L, Chaminade, F, Boudier, C, De Rocquigny, H, Rene, B, Mely, Y, Fosse, P, Mauffret, O.
Deposit date:2010-10-08
Release date:2010-12-08
Last modified:2024-05-01
Method:SOLUTION NMR
Cite:Structural insights into the cTAR DNA recognition by the HIV-1 nucleocapsid protein: role of sugar deoxyriboses in the binding polarity of NC.
Nucleic Acids Res., 39, 2011
1EZN
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BU of 1ezn by Molmil
SOLUTION STRUCTURE OF A DNA THREE-WAY JUNCTION
Descriptor: DNA THREE-WAY JUNCTION
Authors:van Buuren, B.N.M, Overmars, F.J, Ippel, J.H, Altona, C, Wijmenga, S.S.
Deposit date:2000-05-11
Release date:2001-04-21
Last modified:2024-05-22
Method:SOLUTION NMR
Cite:Solution structure of a DNA three-way junction containing two unpaired thymidine bases. Identification of sequence features that decide conformer selection.
J.Mol.Biol., 304, 2000
2JHR
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BU of 2jhr by Molmil
Crystal structure of myosin-2 motor domain in complex with ADP- metavanadate and pentabromopseudilin
Descriptor: ADP METAVANADATE, MAGNESIUM ION, MYOSIN-2 HEAVY CHAIN, ...
Authors:Fedorov, R, Boehl, M, Tsiavaliaris, G, Hartmann, F.K, Baruch, P, Brenner, B, Martin, R, Knoelker, H.J, Gutzeit, H.O, Manstein, D.J.
Deposit date:2008-03-25
Release date:2009-01-13
Last modified:2023-12-13
Method:X-RAY DIFFRACTION (2.8 Å)
Cite:The Mechanism of Pentabromopseudilin Inhibition of Myosin Motor Activity.
Nat.Struct.Mol.Biol., 16, 2009
2IZX
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BU of 2izx by Molmil
Molecular Basis of AKAP Specificity for PKA Regulatory Subunits
Descriptor: AKAP-IS, CAMP-DEPENDENT PROTEIN KINASE TYPE II-ALPHA REGULATORY SUBUNIT, DITHIANE DIOL
Authors:Gold, M.G, Lygren, B, Dokurno, P, Hoshi, N, McConnachie, G, Tasken, K, Carlson, C.R, Scott, J.D, Barford, D.
Deposit date:2006-07-27
Release date:2006-11-08
Last modified:2024-05-01
Method:X-RAY DIFFRACTION (1.3 Å)
Cite:Molecular Basis of Akap Specificity for Pka Regulatory Subunits.
Mol.Cell, 24, 2006
3EAB
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BU of 3eab by Molmil
Crystal structure of Spastin MIT in complex with ESCRT III
Descriptor: CHMP1b, Spastin
Authors:Yang, D, Rimanchi, N, Renvoise, B, Lippincott-Schwartz, J, Blackstone, C, Hurley, J.H.
Deposit date:2008-08-25
Release date:2008-11-11
Last modified:2024-02-21
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:Structural basis for midbody targeting of spastin by the ESCRT-III protein CHMP1B.
Nat.Struct.Mol.Biol., 15, 2008
2IZY
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BU of 2izy by Molmil
Molecular Basis of AKAP Specificity for PKA Regulatory Subunits
Descriptor: CAMP-DEPENDENT PROTEIN KINASE REGULATORY SUBUNIT II
Authors:Gold, M.G, Lygren, B, Dokurno, P, Hoshi, N, McConnachie, G, Tasken, K, Carlson, C.R, Scott, J.D, Barford, D.
Deposit date:2006-07-27
Release date:2006-11-13
Last modified:2024-05-08
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Molecular Basis of Akap Specificity for Pka Regululatory Subunits
Mol.Cell, 24, 2006
5SZS
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BU of 5szs by Molmil
Glycan shield and epitope masking of a coronavirus spike protein observed by cryo-electron microscopy
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, Spike glycoprotein, ...
Authors:Walls, A.C, Tortorici, M.A, Frenz, B, Snijder, J, Li, W, Rey, F.A, DiMaio, F, Bosch, B.J, Veesler, D.
Deposit date:2016-08-15
Release date:2016-09-14
Last modified:2020-07-29
Method:ELECTRON MICROSCOPY (3.4 Å)
Cite:Glycan shield and epitope masking of a coronavirus spike protein observed by cryo-electron microscopy.
Nat.Struct.Mol.Biol., 23, 2016
3JCL
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BU of 3jcl by Molmil
Cryo-electron microscopy structure of a coronavirus spike glycoprotein trimer
Descriptor: Spike glycoprotein
Authors:Walls, A.C, Tortorici, M.A, Bosch, B.J, Frenz, B, Rottier, P.J.M, DiMaio, F, Rey, F.A, Veesler, D.
Deposit date:2015-12-21
Release date:2016-02-03
Last modified:2018-07-18
Method:ELECTRON MICROSCOPY (4 Å)
Cite:Cryo-electron microscopy structure of a coronavirus spike glycoprotein trimer.
Nature, 531, 2016

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