PDB Search results for query - Protein Data Bank Japan

PDB: 98 results

Crystal Structure of a Redshifted Mutant (K83M) of the Red Fluorescent Protein dRFP583/dsRed
Descriptor:	Red fluorescent protein drFP583
Authors:	Yarbrough, C.A, Remington, S.J.
Deposit date:	2006-06-07
Release date:	2006-08-22
Last modified:	2023-11-15
Method:	X-RAY DIFFRACTION (2 Å)
Cite:	Novel Chromophores and Buried Charges Control Color in mFruits(,). Biochemistry, 45, 2006

1CSS

ALPHA-FLUORO ACID AND ALPHA-FLUORO AMIDE ANALOGS OF ACETYL-COA AS INHIBITORS OF OF CITRATE SYNTHASE: EFFECT OF PKA MATCHING ON BINDING AFFINITY AND HYDROGEN BOND LENGTH
Descriptor:	ALPHA-FLUORO-CARBOXYMETHYLDETHIA COENZYME A COMPLEX, CITRATE SYNTHASE, OXALOACETATE ION
Authors:	Usher, K.C, Remington, S.J.
Deposit date:	1995-08-04
Release date:	1995-10-15
Last modified:	2024-02-07
Method:	X-RAY DIFFRACTION (1.7 Å)
Cite:	alpha-Fluoro acid and alpha-fluoro amide analogs of acetyl-CoA as inhibitors of citrate synthase: effect of pKa matching on binding affinity and hydrogen bond length. Biochemistry, 34, 1995

3CV2

Atomic Resolution Structures of Escherichia coli and Bacillis anthracis Malate Synthase A: Comparison with Isoform G and Implications for Structure Based Drug Design
Descriptor:	COENZYME A, MAGNESIUM ION, Malate synthase A, ...
Authors:	Lohman, J.R, Remington, S.J.
Deposit date:	2008-04-17
Release date:	2008-11-11
Last modified:	2024-10-30
Method:	X-RAY DIFFRACTION (1.4 Å)
Cite:	Atomic resolution structures of Escherichia coli and Bacillus anthracis malate synthase A: comparison with isoform G and implications for structure-based drug discovery Protein Sci., 17, 2008

3CUX

Atomic Resolution Structures of Escherichia coli and Bacillis anthracis Malate Synthase A: Comparison with Isoform G and Implications for Structure Based Drug Design
Descriptor:	MAGNESIUM ION, Malate synthase
Authors:	Lohman, J.R, Remington, S.J.
Deposit date:	2008-04-17
Release date:	2008-11-11
Last modified:	2024-04-03
Method:	X-RAY DIFFRACTION (1.7 Å)
Cite:	Atomic resolution structures of Escherichia coli and Bacillus anthracis malate synthase A: comparison with isoform G and implications for structure-based drug discovery Protein Sci., 17, 2008

3CUZ

Atomic Resolution Structures of Escherichia coli and Bacillis anthracis Malate Synthase A: Comparison with Isoform G and Implications for Structure Based Drug Design
Descriptor:	MAGNESIUM ION, Malate synthase A
Authors:	Lohman, J.R, Remington, S.J.
Deposit date:	2008-04-17
Release date:	2008-11-11
Last modified:	2024-04-03
Method:	X-RAY DIFFRACTION (1.04 Å)
Cite:	Atomic resolution structures of Escherichia coli and Bacillus anthracis malate synthase A: comparison with isoform G and implications for structure-based drug discovery Protein Sci., 17, 2008

3GJ1

Non photoactivated state of PA-GFP
Descriptor:	CHLORIDE ION, Green fluorescent protein, SULFATE ION
Authors:	Henderson, J.N, Gepshtein, R, Heenan, J.R, Kallio, K, Huppert, D, Remington, S.J.
Deposit date:	2009-03-07
Release date:	2009-03-24
Last modified:	2024-10-16
Method:	X-RAY DIFFRACTION (1.8 Å)
Cite:	Structure and mechanism of the photoactivatable green fluorescent protein. J.Am.Chem.Soc., 131, 2009

1CSR

Alpha-fluoro acid and alpha-fluoro amide analogs of acetyl-coa as inhibitors of of citrate synthase: effect of pka matching on binding affinity and hydrogen bond length
Descriptor:	ALPHA-FLUORO-AMIDOCARBOXYMETHYLDETHIA COENZYME A COMPLEX, CITRATE SYNTHASE, OXALOACETATE ION
Authors:	Usher, K.C, Remington, S.J.
Deposit date:	1995-08-04
Release date:	1995-10-15
Last modified:	2024-02-07
Method:	X-RAY DIFFRACTION (1.7 Å)
Cite:	alpha-Fluoro acid and alpha-fluoro amide analogs of acetyl-CoA as inhibitors of citrate synthase: effect of pKa matching on binding affinity and hydrogen bond length. Biochemistry, 34, 1995

1YSC

2.8 ANGSTROMS STRUCTURE OF YEAST SERINE CARBOXYPEPTIDASE
Descriptor:	2-acetamido-2-deoxy-beta-D-glucopyranose, SERINE CARBOXYPEPTIDASE
Authors:	Endrizzi, J.A, Remington, S.J.
Deposit date:	1994-03-08
Release date:	1994-06-22
Last modified:	2020-07-29
Method:	X-RAY DIFFRACTION (2.8 Å)
Cite:	2.8-A structure of yeast serine carboxypeptidase Biochemistry, 33, 1994

1YFP

STRUCTURE OF YELLOW-EMISSION VARIANT OF GFP
Descriptor:	YELLOW FLUORESCENT PROTEIN
Authors:	Wachter, R.M, Elsliger, M.-A, Kallio, K, Hanson, G.T, Remington, S.J.
Deposit date:	1998-08-28
Release date:	1998-10-28
Last modified:	2024-10-16
Method:	X-RAY DIFFRACTION (2.5 Å)
Cite:	Structural basis of spectral shifts in the yellow-emission variants of green fluorescent protein. Structure, 6, 1998

1BO5

CRYSTAL STRUCTURE OF THE COMPLEX BETWEEN ESCHERICHIA COLI GLYCEROL KINASE AND THE ALLOSTERIC REGULATOR FRUCTOSE 1,6-BISPHOSPHATE.
Descriptor:	1,6-di-O-phosphono-beta-D-fructofuranose, GLYCEROL, PROTEIN (GLYCEROL KINASE)
Authors:	Ormo, M, Bystrom, C.E, Remington, S.J.
Deposit date:	1998-08-10
Release date:	1999-01-13
Last modified:	2023-08-09
Method:	X-RAY DIFFRACTION (3.2 Å)
Cite:	Crystal structure of a complex of Escherichia coli glycerol kinase and an allosteric effector fructose 1,6-bisphosphate. Biochemistry, 37, 1998

1BOT

CRYSTAL STRUCTURE OF THE COMPLEX BETWEEN ESCHERICHIA COLI GLYCEROL KINASE AND THE ALLOSTERIC REGULATOR FRUCTOSE 1,6-BISPHOSPHATE.
Descriptor:	4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID, GLYCEROL, PROTEIN (GLYCEROL KINASE)
Authors:	Ormo, M, Bystrom, C.E, Remington, S.J.
Deposit date:	1998-08-05
Release date:	1999-01-19
Last modified:	2023-08-09
Method:	X-RAY DIFFRACTION (3.05 Å)
Cite:	Crystal structure of a complex of Escherichia coli glycerol kinase and an allosteric effector fructose 1,6-bisphosphate. Biochemistry, 37, 1998

1BWF

ESCHERICHIA COLI GLYCEROL KINASE MUTANT WITH BOUND ATP ANALOG SHOWING SUBSTANTIAL DOMAIN MOTION
Descriptor:	GLYCEROL, GLYCEROL KINASE, MAGNESIUM ION, ...
Authors:	Bystrom, C.E, Pettigrew, D.W, Branchaud, B.P, Remington, S.J.
Deposit date:	1998-09-23
Release date:	1999-05-18
Last modified:	2024-05-22
Method:	X-RAY DIFFRACTION (3 Å)
Cite:	Crystal structures of Escherichia coli glycerol kinase variant S58-->W in complex with nonhydrolyzable ATP analogues reveal a putative active conformation of the enzyme as a result of domain motion. Biochemistry, 38, 1999

1C4F

GREEN FLUORESCENT PROTEIN S65T AT PH 4.6
Descriptor:	GREEN FLUORESCENT PROTEIN
Authors:	Elsliger, M.A, Wachter, R.M, Kallio, K, Hanson, G.T, Remington, S.J.
Deposit date:	1999-08-21
Release date:	1999-08-31
Last modified:	2023-11-15
Method:	X-RAY DIFFRACTION (2.25 Å)
Cite:	Structural and spectral response of green fluorescent protein variants to changes in pH. Biochemistry, 38, 1999

1CSH

A very short hydrogen bond provides only moderate stabilization of an enzyme: inhibitor complex of citrate synthase
Descriptor:	AMIDOCARBOXYMETHYLDETHIA COENZYME *A, CITRATE SYNTHASE, OXALOACETATE ION
Authors:	Usher, K.C, Remington, S.J.
Deposit date:	1994-03-07
Release date:	1994-04-30
Last modified:	2024-02-07
Method:	X-RAY DIFFRACTION (1.65 Å)
Cite:	A very short hydrogen bond provides only moderate stabilization of an enzyme-inhibitor complex of citrate synthase. Biochemistry, 33, 1994

1CSI

A very short hydrogen bond provides only moderate stabilization of an enzyme: inhibitor complex of citrate synthase
Descriptor:	CARBOXYMETHYLDETHIA COENZYME *A, CITRATE SYNTHASE, OXALOACETATE ION
Authors:	Usher, K.C, Remington, S.J.
Deposit date:	1994-03-07
Release date:	1994-04-30
Last modified:	2024-02-07
Method:	X-RAY DIFFRACTION (1.7 Å)
Cite:	A very short hydrogen bond provides only moderate stabilization of an enzyme-inhibitor complex of citrate synthase. Biochemistry, 33, 1994

1GLF

CRYSTAL STRUCTURES OF ESCHERICHIA COLI GLYCEROL KINASE AND THE MUTANT A65T IN AN INACTIVE TETRAMER: CONFORMATIONAL CHANGES AND IMPLICATIONS FOR ALLOSTERIC REGULATION
Descriptor:	ADENOSINE-5'-DIPHOSPHATE, GLYCEROL, PHOSPHATE ION, ...
Authors:	Feese, M.D, Faber, H.R, Bystrom, C.E, Pettigrew, D.W, Remington, S.J.
Deposit date:	1998-08-30
Release date:	1998-10-16
Last modified:	2023-08-09
Method:	X-RAY DIFFRACTION (2.62 Å)
Cite:	Glycerol kinase from Escherichia coli and an Ala65-->Thr mutant: the crystal structures reveal conformational changes with implications for allosteric regulation. Structure, 6, 1998

1CSC

Structure of ternary complexes of citrate synthase with D-and L-malate: Mechanistic implications
Descriptor:	(2S)-2-hydroxybutanedioic acid, CARBOXYMETHYL COENZYME *A, CITRATE SYNTHASE
Authors:	Karpusas, M, Holland, D, Remington, S.J.
Deposit date:	1990-05-07
Release date:	1991-04-15
Last modified:	2024-02-07
Method:	X-RAY DIFFRACTION (1.7 Å)
Cite:	1.9-A structures of ternary complexes of citrate synthase with D- and L-malate: mechanistic implications. Biochemistry, 30, 1991

1BFP

BLUE VARIANT OF GREEN FLUORESCENT PROTEIN
Descriptor:	BLUE FLUORESCENT PROTEIN
Authors:	Wachter, R.M, Remington, S.J.
Deposit date:	1997-04-09
Release date:	1997-07-07
Last modified:	2024-10-16
Method:	X-RAY DIFFRACTION (2.1 Å)
Cite:	Crystal structure and photodynamic behavior of the blue emission variant Y66H/Y145F of green fluorescent protein. Biochemistry, 36, 1997

1EMG

GREEN FLUORESCENT PROTEIN (65-67 REPLACED BY CRO, S65T SUBSTITUTION, Q80R)
Descriptor:	PROTEIN (GREEN FLUORESCENT PROTEIN)
Authors:	Elsliger, M.A, Wachter, R.M, Kallio, K, Hanson, G.T, Remington, S.J.
Deposit date:	1998-11-12
Release date:	1999-05-12
Last modified:	2024-11-06
Method:	X-RAY DIFFRACTION (2 Å)
Cite:	Structural and spectral response of green fluorescent protein variants to changes in pH. Biochemistry, 38, 1999

6B7L

Aeromonas veronii immune modulator A
Descriptor:	CHLORIDE ION, FORMIC ACID, immune modulator A
Authors:	Sweeney, E.S, Remington, S.J, Perkins, A.
Deposit date:	2017-10-04
Release date:	2018-10-03
Last modified:	2024-11-06
Method:	X-RAY DIFFRACTION (2.3 Å)
Cite:	A bacterial immunomodulatory protein with lipocalin-like domains facilitates host-bacteria mutualism in larval zebrafish. Elife, 7, 2018

2BLS

AMPC BETA-LACTAMASE FROM ESCHERICHIA COLI
Descriptor:	AMPC BETA-LACTAMASE
Authors:	Usher, K.C, Wery, J.-P, Blaszczak, L.C, Remington, S.J.
Deposit date:	1998-06-03
Release date:	1998-08-12
Last modified:	2024-05-22
Method:	X-RAY DIFFRACTION (2 Å)
Cite:	Three-dimensional structure of AmpC beta-lactamase from Escherichia coli bound to a transition-state analogue: possible implications for the oxyanion hypothesis and for inhibitor design. Biochemistry, 37, 1998

2DUF

crystal structure of a green fluorescent protein variant S65T/H148D at pH 5.6
Descriptor:	Green fluorescent protein
Authors:	Shu, X, Remington, S.J.
Deposit date:	2006-07-23
Release date:	2007-07-10
Last modified:	2024-07-10
Method:	X-RAY DIFFRACTION (1.5 Å)
Cite:	Ultrafast excited-state dynamics in the green fluorescent protein variant S65T/H148D. 1. Mutagenesis and structural studies. Biochemistry, 46, 2007

2DUI

crystal structure of a green fluorescent protein variant H148D at pH 9
Descriptor:	Green fluorescent protein
Authors:	Shu, X, Remington, S.J.
Deposit date:	2006-07-23
Release date:	2007-07-10
Last modified:	2024-10-23
Method:	X-RAY DIFFRACTION (1.36 Å)
Cite:	Ultrafast excited-state dynamics in the green fluorescent protein variant S65T/H148D. 1. Mutagenesis and structural studies. Biochemistry, 46, 2007

2A48

Crystal structure of amFP486 E150Q
Descriptor:	BETA-MERCAPTOETHANOL, GFP-like fluorescent chromoprotein amFP486
Authors:	Henderson, J.N, Remington, S.J.
Deposit date:	2005-06-28
Release date:	2005-08-16
Last modified:	2023-11-15
Method:	X-RAY DIFFRACTION (2 Å)
Cite:	Crystal structures and mutational analysis of amFP486, a cyan fluorescent protein from Anemonia majano Proc.Natl.Acad.Sci.Usa, 102, 2005

2AH8

roGFP1-R7. Cystal structure analysis of a rate-enhanced variant of redox-sensitive green fluorescent protein in the oxidized form.
Descriptor:	Green fluorescent protein, IMIDAZOLE
Authors:	Cannon, M.B, Remington, S.J.
Deposit date:	2005-07-27
Release date:	2006-03-21
Last modified:	2023-11-15
Method:	X-RAY DIFFRACTION (2.24 Å)
Cite:	Re-engineering redox-sensitive green fluorescent protein for improved response rate. Protein Sci., 15, 2006

<1 234 >

Total results:	98
Displayed results:	25
Sorted by:	Hit score (from highest)
Deposition authors:	"Remington, S.J"