8XF0
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![BU of 8xf0 by Molmil](/molmil-images/mine/8xf0) | Crystal structure of the dissociated C-phycocyanin alpha-chain from Thermoleptolyngbya sp. O-77 | Descriptor: | C-phycocyanin alpha chain, MAGNESIUM ION, PHYCOCYANOBILIN | Authors: | Nguyen, H.K, Teramoto, T, Kakuta, Y, Yoon, K.S. | Deposit date: | 2023-12-13 | Release date: | 2024-05-22 | Method: | X-RAY DIFFRACTION (2.5 Å) | Cite: | Disassembly and reassembly of the non-conventional thermophilic C-phycocyanin. J.Biosci.Bioeng., 137, 2024
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7EH7
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![BU of 7eh7 by Molmil](/molmil-images/mine/7eh7) | Cryo-EM structure of the octameric state of C-phycocyanin from Thermoleptolyngbya sp. O-77 | Descriptor: | C-phycocyanin alpha chain, C-phycocyanin beta chain, PHYCOCYANOBILIN | Authors: | Minato, T, Teramoto, T, Adachi, N, Hung, N.K, Yamada, K, Kawasaki, M, Akutsu, M, Moriya, T, Senda, T, Ogo, S, Kakuta, Y, Yoon, K.S. | Deposit date: | 2021-03-28 | Release date: | 2021-11-17 | Method: | ELECTRON MICROSCOPY (3.71 Å) | Cite: | Non-conventional octameric structure of C-phycocyanin. Commun Biol, 4, 2021
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7EH8
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![BU of 7eh8 by Molmil](/molmil-images/mine/7eh8) | Cryo-EM structure of the hexameric state of C-phycocyanin from Thermoleptolyngbya sp. O-77 | Descriptor: | C-phycocyanin alpha chain, C-phycocyanin beta chain, PHYCOCYANOBILIN | Authors: | Minato, T, Teramoto, T, Adachi, N, Hung, N.K, Yamada, K, Kawasaki, M, Akutsu, M, Moriya, T, Senda, T, Ogo, S, Kakuta, Y, Yoon, K.S. | Deposit date: | 2021-03-28 | Release date: | 2021-11-17 | Method: | ELECTRON MICROSCOPY (3.06 Å) | Cite: | Non-conventional octameric structure of C-phycocyanin. Commun Biol, 4, 2021
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8J12
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![BU of 8j12 by Molmil](/molmil-images/mine/8j12) | Cryo-EM structure of the AsCas12f-sgRNA-target DNA ternary complex | Descriptor: | DNA (38-MER), MAGNESIUM ION, RNA (247-MER), ... | Authors: | Hino, T, Omura, N.S, Nakagawa, R, Togashi, T, Takeda, N.S, Hiramoto, T, Tasaka, S, Hirano, H, Tokuyama, T, Uosaki, H, Ishiguro, H, Yamano, H, Ozaki, Y, Motooka, D, Mori, H, Kirita, Y, Kise, Y, Itoh, Y, Matoba, S, Aburatani, H, Yachie, N, Siksnys, V, Ohmori, T, Hoshino, A, Nureki, O. | Deposit date: | 2023-04-12 | Release date: | 2023-09-27 | Method: | ELECTRON MICROSCOPY (3.08 Å) | Cite: | Minimal and most efficient genome editing Cas enzyme To Be Published
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8J1J
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![BU of 8j1j by Molmil](/molmil-images/mine/8j1j) | Cryo-EM structure of the AsCas12f-YHAM-sgRNAS3-5v7-target DNA | Descriptor: | DNA (38-MER), MAGNESIUM ION, RNA (118-MER), ... | Authors: | Hino, T, Omura, N.S, Nakagawa, R, Togashi, T, Takeda, N.S, Hiramoto, T, Tasaka, S, Hirano, H, Tokuyama, T, Uosaki, H, Ishiguro, H, Yamano, H, Ozaki, Y, Motooka, D, Mori, H, Kirita, Y, Kise, Y, Itoh, Y, Matoba, S, Aburatani, H, Yachie, N, Siksnys, V, Ohmori, T, Hoshino, A, Nureki, O. | Deposit date: | 2023-04-13 | Release date: | 2023-09-27 | Method: | ELECTRON MICROSCOPY (2.91 Å) | Cite: | Minimal and most efficient genome editing Cas enzyme To Be Published
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8J3R
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![BU of 8j3r by Molmil](/molmil-images/mine/8j3r) | Cryo-EM structure of the AsCas12f-HKRA-sgRNAS3-5v7-target DNA | Descriptor: | DNA (37-MER), DNA (38-MER), MAGNESIUM ION, ... | Authors: | Hino, T, Omura, N.S, Nakagawa, R, Togashi, T, Takeda, N.S, Hiramoto, T, Tasaka, S, Hirano, H, Tokuyama, T, Uosaki, H, Ishiguro, H, Yamano, H, Ozaki, Y, Motooka, D, Mori, H, Kirita, Y, Kise, Y, Itoh, Y, Matoba, S, Aburatani, H, Yachie, N, Siksnys, V, Ohmori, T, Hoshino, A, Nureki, O. | Deposit date: | 2023-04-18 | Release date: | 2023-09-27 | Method: | ELECTRON MICROSCOPY (2.95 Å) | Cite: | Minimal and most efficient genome editing Cas enzyme To Be Published
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8IQR
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![BU of 8iqr by Molmil](/molmil-images/mine/8iqr) | Crystal structure of Anti-PEG antibody M9 Fv-clasp fragment with PEG (co-crystallization with PEG550DME) | Descriptor: | 2,5,8,11,14,17,20,23,26-nonaoxaoctacosane, M9 VH-SARAH, M9 VL-SARAH | Authors: | Mori, T, Teramoto, T, Liu, Y, Mori, T, Kakuta, Y. | Deposit date: | 2023-03-17 | Release date: | 2024-03-20 | Method: | X-RAY DIFFRACTION (2.35 Å) | Cite: | Comparation of structures and binding properties between two anti-polyethylene glycol antibodies induced via T cell-independent and T cell-dependent pathway To Be Published
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8IQP
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![BU of 8iqp by Molmil](/molmil-images/mine/8iqp) | Crystal structure of Anti-PEG antibody M9 Fv-clasp fragment with PEG (co-crystallization with PEG3350) | Descriptor: | DODECAETHYLENE GLYCOL, M9 VH-SARAH, M9 VL-SARAH | Authors: | Mori, T, Teramoto, T, Liu, Y, Mori, T, Kakuta, Y. | Deposit date: | 2023-03-17 | Release date: | 2024-03-20 | Method: | X-RAY DIFFRACTION (1.76 Å) | Cite: | Comparation of structures and binding properties between two anti-polyethylene glycol antibodies induced via T cell-independent and T cell-dependent pathway To Be Published
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8IQQ
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![BU of 8iqq by Molmil](/molmil-images/mine/8iqq) | Crystal structure of Anti-PEG antibody M9 Fv-clasp fragment with PEG (co-crystallization with PEG2000MME) | Descriptor: | DODECAETHYLENE GLYCOL, M9 VH-SARAH, M9 VL-SARAH | Authors: | Mori, T, Teramoto, T, Liu, Y, Mori, T, Kakuta, Y. | Deposit date: | 2023-03-17 | Release date: | 2024-03-20 | Method: | X-RAY DIFFRACTION (2.02 Å) | Cite: | Comparation of structures and binding properties between two anti-polyethylene glycol antibodies induced via T cell-independent and T cell-dependent pathway To Be Published
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8IQS
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![BU of 8iqs by Molmil](/molmil-images/mine/8iqs) | Crystal structure of Anti-PEG antibody M11 Fv-clasp fragment with PEG (co-crystallization with PEG3350) | Descriptor: | 3,6,9,12,15,18,21-HEPTAOXATRICOSANE-1,23-DIOL, M11 VH-SARAH, M11 VL-SARAH, ... | Authors: | Mori, T, Teramoto, T, Liu, Y, Mori, T, Kakuta, Y. | Deposit date: | 2023-03-17 | Release date: | 2024-03-20 | Method: | X-RAY DIFFRACTION (2.16 Å) | Cite: | Comparation of structures and binding properties between two anti-polyethylene glycol antibodies induced via T cell-independent and T cell-dependent pathway To Be Published
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8Y9P
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![BU of 8y9p by Molmil](/molmil-images/mine/8y9p) | |
7EFV
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![BU of 7efv by Molmil](/molmil-images/mine/7efv) | Crystal structure of octameric state of C-phycocyanin from Thermoleptolyngbya sp. O-77 | Descriptor: | C-phycocyanin alpha chain, C-phycocyanin beta chain, PHYCOCYANOBILIN | Authors: | Minato, T, Teramoto, T, Hung, N.K, Yamada, K, Ogo, S, Kakuta, Y, Yoon, K.S. | Deposit date: | 2021-03-23 | Release date: | 2021-11-17 | Last modified: | 2023-11-29 | Method: | X-RAY DIFFRACTION (2.77 Å) | Cite: | Non-conventional octameric structure of C-phycocyanin. Commun Biol, 4, 2021
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7EFW
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![BU of 7efw by Molmil](/molmil-images/mine/7efw) | Crystal structure of hexameric state of C-phycocyanin from Thermoleptolyngbya sp. O-77 | Descriptor: | C-phycocyanin alpha chain, C-phycocyanin beta chain, GLYCEROL, ... | Authors: | Minato, T, Teramoto, T, Hung, N.K, Yamada, K, Ogo, S, Kakuta, Y, Yoon, K.S. | Deposit date: | 2021-03-23 | Release date: | 2021-11-17 | Last modified: | 2023-11-29 | Method: | X-RAY DIFFRACTION (1.65 Å) | Cite: | Non-conventional octameric structure of C-phycocyanin. Commun Biol, 4, 2021
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8XF3
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![BU of 8xf3 by Molmil](/molmil-images/mine/8xf3) | Crystal structure of the reassembled C-phycocyanin octamer from Thermoleptolyngbya sp. O-77 | Descriptor: | C-phycocyanin alpha chain, C-phycocyanin beta chain, PHOSPHATE ION, ... | Authors: | Nguyen, H.K, Teramoto, T, Kakuta, Y, Yoon, K.S. | Deposit date: | 2023-12-13 | Release date: | 2024-05-22 | Method: | X-RAY DIFFRACTION (2.5 Å) | Cite: | Disassembly and reassembly of the non-conventional thermophilic C-phycocyanin. J.Biosci.Bioeng., 137, 2024
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8XF1
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![BU of 8xf1 by Molmil](/molmil-images/mine/8xf1) | Crystal structure of the dissociated C-phycocyanin beta-chain from Thermoleptolyngbya sp. O-77 | Descriptor: | C-phycocyanin beta chain, PHYCOCYANOBILIN | Authors: | Nguyen, H.K, Teramoto, T, Kakuta, Y, Yoon, K.S. | Deposit date: | 2023-12-13 | Release date: | 2024-05-22 | Method: | X-RAY DIFFRACTION (1.94 Å) | Cite: | Disassembly and reassembly of the non-conventional thermophilic C-phycocyanin. J.Biosci.Bioeng., 137, 2024
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8W5Z
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![BU of 8w5z by Molmil](/molmil-images/mine/8w5z) | Crystal structure of tick tyrosylprotein sulfotransferase reveals the activation mechanism of tick anticoagulant protein madanin | Descriptor: | 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL, 3-PYRIDINIUM-1-YLPROPANE-1-SULFONATE, ADENOSINE-3'-5'-DIPHOSPHATE, ... | Authors: | Yoshimura, M, Teramoto, T, Nishimoto, E, Kakuta, Y. | Deposit date: | 2023-08-28 | Release date: | 2024-04-10 | Method: | X-RAY DIFFRACTION (1.55 Å) | Cite: | Crystal structure of tick tyrosylprotein sulfotransferase reveals the activation mechanism of the tick anticoagulant protein madanin. J.Biol.Chem., 300, 2024
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3WJL
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![BU of 3wjl by Molmil](/molmil-images/mine/3wjl) | Crystal structure of IIb selective Fc variant, Fc(V12), in complex with FcgRIIb | Descriptor: | 2-acetamido-2-deoxy-beta-D-glucopyranose, Ig gamma-1 chain C region, Low affinity immunoglobulin gamma Fc region receptor II-c, ... | Authors: | Kadono, S, Mimoto, F, Katada, H, Igawa, T, Kuramochi, T, Muraoka, M, Wada, Y, Haraya, K, Miyazaki, T, Hattori, K. | Deposit date: | 2013-10-11 | Release date: | 2013-11-13 | Last modified: | 2023-11-29 | Method: | X-RAY DIFFRACTION (2.86 Å) | Cite: | Engineered antibody Fc variant with selectively enhanced Fc gamma RIIb binding over both Fc gamma RIIaR131 and Fc gamma RIIaH131. Protein Eng.Des.Sel., 26, 2013
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3WJJ
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![BU of 3wjj by Molmil](/molmil-images/mine/3wjj) | Crystal structure of IIb selective Fc variant, Fc(P238D), in complex with FcgRIIb | Descriptor: | Ig gamma-1 chain C region, Low affinity immunoglobulin gamma Fc region receptor II-b, beta-D-galactopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-2)-alpha-D-mannopyranose-(1-6)-[2-acetamido-2-deoxy-beta-D-glucopyranose-(1-2)-alpha-D-mannopyranose-(1-3)]beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-[beta-L-fucopyranose-(1-6)]2-acetamido-2-deoxy-beta-D-glucopyranose | Authors: | Kadono, S, Mimoto, F, Katada, H, Igawa, T, Kuramochi, T, Muraoka, M, Wada, Y, Haraya, K, Miyazaki, T, Hattori, K. | Deposit date: | 2013-10-10 | Release date: | 2013-11-13 | Last modified: | 2020-07-29 | Method: | X-RAY DIFFRACTION (2.6 Å) | Cite: | Engineered antibody Fc variant with selectively enhanced Fc gamma RIIb binding over both Fc gamma RIIaR131 and Fc gamma RIIaH131. Protein Eng.Des.Sel., 26, 2013
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2E2R
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![BU of 2e2r by Molmil](/molmil-images/mine/2e2r) | Crystal structure of human estrogen-related receptor gamma ligand binding domain complex with bisphenol A | Descriptor: | 4,4'-PROPANE-2,2-DIYLDIPHENOL, Estrogen-related receptor gamma, GLYCEROL | Authors: | Matsushima, A, Kakuta, Y, Teramoto, T, Koshiba, T, Kimura, M, Shimohigashi, Y. | Deposit date: | 2006-11-16 | Release date: | 2007-09-11 | Last modified: | 2023-10-25 | Method: | X-RAY DIFFRACTION (1.6 Å) | Cite: | Structural Evidence for Endocrine Disruptor Bisphenol A Binding to Human Nuclear Receptor ERR{gamma} J.Biochem.(Tokyo), 142, 2007
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8K9Y
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![BU of 8k9y by Molmil](/molmil-images/mine/8k9y) | Crystal structure of Arabidopsis thaliana sulfotransferase SOT16 involved in glucosinolate biosynthesis | Descriptor: | ADENOSINE-3'-5'-DIPHOSPHATE, CITRATE ANION, Cytosolic sulfotransferase 16, ... | Authors: | Iwamoto, Y, Saito, S, Teramoto, T, Kakuta, Y. | Deposit date: | 2023-08-02 | Release date: | 2023-09-13 | Method: | X-RAY DIFFRACTION (1.82 Å) | Cite: | Crystal structure of Arabidopsis thaliana sulfotransferase SOT16 involved in glucosinolate biosynthesis. Biochem.Biophys.Res.Commun., 677, 2023
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5X2B
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![BU of 5x2b by Molmil](/molmil-images/mine/5x2b) | |
2ZBS
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![BU of 2zbs by Molmil](/molmil-images/mine/2zbs) | |
2ZAS
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![BU of 2zas by Molmil](/molmil-images/mine/2zas) | Crystal structure of human estrogen-related receptor gamma ligand binding domain complex with 4-alpha-cumylphenol, a bisphenol A derivative | Descriptor: | 4-(1-methyl-1-phenylethyl)phenol, Estrogen-related receptor gamma, GLYCEROL | Authors: | Matsushima, A, Kakuta, Y, Teramoto, T, Shimohigashi, Y. | Deposit date: | 2007-10-09 | Release date: | 2008-10-07 | Last modified: | 2023-11-01 | Method: | X-RAY DIFFRACTION (2 Å) | Cite: | ERRgamma tethers strongly bisphenol A and 4-alpha-cumylphenol in an induced-fit manner Biochem.Biophys.Res.Commun., 373, 2008
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6KZR
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![BU of 6kzr by Molmil](/molmil-images/mine/6kzr) | Crystal structure of mouse DCAR2 CRD domain | Descriptor: | C-type lectin domain family 4, member b1, CALCIUM ION, ... | Authors: | Omahdi, Z, Horikawa, Y, Toyonaga, K, Teramoto, T, Kakuta, Y, Yamasaki, S. | Deposit date: | 2019-09-25 | Release date: | 2020-03-25 | Last modified: | 2023-11-22 | Method: | X-RAY DIFFRACTION (2.304 Å) | Cite: | Structural insight into the recognition of pathogen-derived phosphoglycolipids by C-type lectin receptor DCAR. J.Biol.Chem., 295, 2020
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1K1R
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![BU of 1k1r by Molmil](/molmil-images/mine/1k1r) | HETERODUPLEX OF CHIRALLY PURE R-METHYLPHOSPHONATE/DNA DUPLEX | Descriptor: | 5'-D(*CP*(CMR)P*(RMP)P*(RMP)P*(RMP)P*(CMR)P*(RMP))-3', 5'-D(*TP*GP*TP*TP*TP*GP*GP*C)-3' | Authors: | Thiviyanathan, V, Vyazovkina, K.V, Gozansky, E.K, Bichenkova, E, Abramova, T.V, Luxon, B.A, Lebedev, A.V, Gorenstein, D.G. | Deposit date: | 2001-09-25 | Release date: | 2002-06-19 | Last modified: | 2024-05-22 | Method: | SOLUTION NMR | Cite: | Structure of hybrid backbone methylphosphonate DNA heteroduplexes: effect of R and S stereochemistry. Biochemistry, 41, 2002
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