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PDB: 2341 results

4A5M
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BU of 4a5m by Molmil
Redox regulator HypR in its oxidized form
Descriptor: 1,2-ETHANEDIOL, CHLORIDE ION, UNCHARACTERIZED HTH-TYPE TRANSCRIPTIONAL REGULATOR YYBR
Authors:Palm, G.J, Waack, P, Read, R.J, Hinrichs, W.
Deposit date:2011-10-26
Release date:2012-01-11
Last modified:2024-05-01
Method:X-RAY DIFFRACTION (3 Å)
Cite:Structural Insights Into the Redox-Switch Mechanism of the Marr/Duf24-Type Regulator Hypr
Nucleic Acids Res., 40, 2012
8R3C
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Cocrystal form II of the Pent - sulfonato-calix[8]arene complex
Descriptor: 2-acetamido-2-deoxy-alpha-D-glucopyranose, Beta propeller, sulfonato-calix[8]arene
Authors:Flood, R.J, Crowley, P.B.
Deposit date:2023-11-08
Release date:2024-03-06
Method:X-RAY DIFFRACTION (1.58 Å)
Cite:Multivalent Calixarene Complexation of a Designed Pentameric Lectin.
Biomacromolecules, 25, 2024
4B14
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Plasmodium vivax N-myristoyltransferase with a bound benzofuran inhibitor (compound 26)
Descriptor: 2-oxopentadecyl-CoA, 3-methoxybenzyl 3-methyl-4-(piperidin-4-yloxy)-1-benzofuran-2-carboxylate, CHLORIDE ION, ...
Authors:Yu, Z, Brannigan, J.A, Moss, D.K, Brzozowski, A.M, Wilkinson, A.J, Holder, A.A, Tate, E.W, Leatherbarrow, R.J.
Deposit date:2012-07-06
Release date:2012-10-17
Last modified:2023-12-20
Method:X-RAY DIFFRACTION (1.5 Å)
Cite:Design and Synthesis of Inhibitors of Plasmodium Falciparum N-Myristoyltransferase, a Promising Target for Anti-Malarial Drug Discovery.
J.Med.Chem., 55, 2012
4B24
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Unprecedented sculpting of DNA at abasic sites by DNA glycosylase homolog Mag2
Descriptor: 5'-D(*CP*GP*AP*TP*AP*GP*GP*TP*AP*GP)-3', 5'-D(*GP*CP*TP*AP*CP*3DRP*TP*AP*TP*CP*GP)-3', PROBABLE DNA-3-METHYLADENINE GLYCOSYLASE 2
Authors:Dalhus, B, Nilsen, L, Korvald, H, Huffman, J, Forstrom, R.J, McMurray, C.T, Alseth, I, Tainer, J.A, Bjoras, M.
Deposit date:2012-07-12
Release date:2013-01-09
Last modified:2024-05-08
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Sculpting of DNA at Abasic Sites by DNA Glycosylase Homolog Mag2.
Structure, 21, 2013
4AXI
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BU of 4axi by Molmil
Structure of the Clostridium difficile EutS protein
Descriptor: ETHANOLAMINE CARBOXYSOME STRUCTURAL PROTEIN, GLYCEROL
Authors:Pitts, A.C, Tuck, L.R, Faulds-Pain, A, Lewis, R.J, Marles-Wright, J.
Deposit date:2012-06-13
Release date:2012-06-27
Last modified:2023-12-20
Method:X-RAY DIFFRACTION (1.51 Å)
Cite:Structural Insight Into the Clostridium Difficile Ethanolamine Utilisation Microcompartment.
Plos One, 7, 2012
4BKG
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BU of 4bkg by Molmil
crystal structure of human diSUMO-2
Descriptor: SMALL UBIQUITIN-RELATED MODIFIER 2
Authors:Keusekotten, K, Bade, V.N, Meyer-Teschendorf, K, Sriramachandran, A, Fischer-Schrader, K, Krause, A, Horst, C, Hofmann, K, Dohmen, R.J, Praefcke, G.J.K.
Deposit date:2013-04-25
Release date:2013-11-06
Last modified:2023-12-20
Method:X-RAY DIFFRACTION (2.11 Å)
Cite:Multivalent Interactions of the Sumo-Interaction Motifs in the Ring-Finger Protein 4 (Rnf4) Determine the Specificity for Chains of the Small Ubiquitin-Related Modifier (Sumo).
Biochem.J., 457, 2014
5SX4
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BU of 5sx4 by Molmil
Crystal Structure of panitumumab in complex with epidermal growth factor receptor domain 3.
Descriptor: 1,2-ETHANEDIOL, Epidermal growth factor receptor, GLYCEROL, ...
Authors:Sickmier, E.A, Kurzeja, R.J.M, Michelsen, K, Mukta, V, Yang, E, Tasker, A.S.
Deposit date:2016-08-09
Release date:2016-10-05
Last modified:2023-10-04
Method:X-RAY DIFFRACTION (2.8 Å)
Cite:The Panitumumab EGFR Complex Reveals a Binding Mechanism That Overcomes Cetuximab Induced Resistance.
Plos One, 11, 2016
4B2O
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BU of 4b2o by Molmil
Crystal structure of Bacillus subtilis YmdB, a global regulator of late adaptive responses.
Descriptor: FE (II) ION, PHOSPHATE ION, YMDB PHOSPHODIESTERASE
Authors:Newman, J.A, Diethmaier, C, Kovacs, A.T, Rodrigues, C, Kuipers, O.P, Stulke, J, Lewis, R.J.
Deposit date:2012-07-17
Release date:2013-07-24
Last modified:2023-12-20
Method:X-RAY DIFFRACTION (1.64 Å)
Cite:The Ymdb Phosphodiesterase is a Global Regulator of Late Adaptive Responses in Bacillus Subtilis.
J.Bacteriol., 196, 2014
4B20
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BU of 4b20 by Molmil
Structural basis of DNA loop recognition by Endonuclease V
Descriptor: 5'-D(*AP*TP*CP*TP*TP*GP*TP*CP*GP*CP)-3', 5'-D(*GP*CP*GP*AP*CP*AP*GP)-3', ENDONUCLEASE V, ...
Authors:Rosnes, I, Rowe, A.D, Forstrom, R.J, Alseth, I, Bjoras, M, Dalhus, B.
Deposit date:2012-07-12
Release date:2013-04-17
Last modified:2024-05-08
Method:X-RAY DIFFRACTION (2.75 Å)
Cite:Structural Basis of DNA Loop Recognition by Endonuclease V.
Structure, 21, 2013
8R3B
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BU of 8r3b by Molmil
Cocrystal form I of the Pent - sulfonato-calix[8]arene complex
Descriptor: 2-acetamido-2-deoxy-alpha-D-glucopyranose, Beta propeller, sulfonato-calix[8]arene
Authors:Flood, R.J, Crowley, P.B.
Deposit date:2023-11-08
Release date:2024-03-06
Method:X-RAY DIFFRACTION (1.66 Å)
Cite:Multivalent Calixarene Complexation of a Designed Pentameric Lectin.
Biomacromolecules, 25, 2024
4BCU
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BU of 4bcu by Molmil
Satellite Tobacco Necrosis Virus (STNV) virus like particle in complex with the B3 aptamer
Descriptor: CALCIUM ION, COAT PROTEIN
Authors:Ford, R.J, Barker, A.M, Bakker, S.E, Coutts, R.H, Ranson, N.A, Phillips, S.E.V, Pearson, A.R, Stockley, P.G.
Deposit date:2012-10-03
Release date:2013-01-23
Last modified:2024-05-08
Method:X-RAY DIFFRACTION (2.29 Å)
Cite:Sequence-Specific, RNA-Protein Interactions Overcome Electrostatic Barriers Preventing Assembly of Satellite Tobacco Necrosis Virus Coat Protein.
J.Mol.Biol., 425, 2013
4BOM
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BU of 4bom by Molmil
Structure of herpesvirus fusion glycoprotein B-bilayer complex revealing the protein-membrane and lateral protein-protein interaction
Descriptor: ENVELOPE GLYCOPROTEIN B
Authors:Maurer, U.E, Zeev-Ben-Mordehai, Z, Pandurangan, A.P, Cairns, T.M, Hannah, B.P, Whitbeck, J.C, Eisenberg, R.J, Cohen, G.H, Topf, M, Huiskonen, J.T, Grunewald, K.
Deposit date:2013-05-21
Release date:2013-07-31
Last modified:2024-05-08
Method:ELECTRON MICROSCOPY (27 Å)
Cite:The structure of herpesvirus fusion glycoprotein B-bilayer complex reveals the protein-membrane and lateral protein-protein interaction.
Structure, 21, 2013
8R3D
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BU of 8r3d by Molmil
Crystal structure of Pent only at pH 8.8
Descriptor: 2-acetamido-2-deoxy-alpha-D-glucopyranose, Beta propeller
Authors:Flood, R.J, Crowley, P.B.
Deposit date:2023-11-08
Release date:2024-03-06
Method:X-RAY DIFFRACTION (1.71 Å)
Cite:Multivalent Calixarene Complexation of a Designed Pentameric Lectin.
Biomacromolecules, 25, 2024
4AUT
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BU of 4aut by Molmil
Crystal structure of the tuberculosis drug target Decaprenyl- Phosphoryl-beta-D-Ribofuranose-2-oxidoreductase (DprE1) from Mycobacterium smegmatis
Descriptor: DECAPRENYL-PHOSPHORYL-BETA-D-RIBOFURANOSE-2-OXIDOREDUCTASE, FLAVIN-ADENINE DINUCLEOTIDE
Authors:Neres, J, Pojer, F, Molteni, E, Chiarelli, L.R, Dhar, N, Boy-Rottger, S, Buroni, S, Fullam, E, Degiacomi, G, Lucarelli, A, Read, R.J, Zanoni, G, Edmondson, D.E, De Rossi, E, Pasca, M, Riccardi, G, Mattevi, A, Dyson, P.J, Cole, S.T, Binda, C.
Deposit date:2012-05-21
Release date:2012-09-05
Last modified:2023-12-20
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Structural Basis for Benzothiazinone-Mediated Killing of Mycobacterium Tuberculosis.
Sci. Transl. Med., 4, 2012
4B11
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BU of 4b11 by Molmil
Plasmodium vivax N-myristoyltransferase with a bound benzofuran inhibitor (compound 13)
Descriptor: 2-oxopentadecyl-CoA, 3-methyl-N-(naphthalen-1-ylmethyl)-4-piperidin-4-yloxy-1-benzofuran-2-carboxamide, CHLORIDE ION, ...
Authors:Yu, Z, Brannigan, J.A, Moss, D.K, Brzozowski, A.M, Wilkinson, A.J, Holder, A.A, Tate, E.W, Leatherbarrow, R.J.
Deposit date:2012-07-06
Release date:2012-10-17
Last modified:2023-12-20
Method:X-RAY DIFFRACTION (1.59 Å)
Cite:Design and Synthesis of Inhibitors of Plasmodium Falciparum N-Myristoyltransferase, a Promising Target for Anti-Malarial Drug Discovery.
J.Med.Chem., 55, 2012
5DAE
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BU of 5dae by Molmil
Kazal type inhibitor from salivary glands of Aedes aegypti mosquito
Descriptor: AAEL006007-PA
Authors:Torquato, R.J.S, Pereira, P.J.B, Tanaka, A.S.
Deposit date:2015-08-19
Release date:2016-09-07
Last modified:2020-01-01
Method:X-RAY DIFFRACTION (1.4 Å)
Cite:High-resolution structure of a Kazal-type serine protease inhibitor from the dengue vector Aedes aegypti.
Acta Crystallogr F Struct Biol Commun, 73, 2017
4AXJ
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BU of 4axj by Molmil
Structure of the Clostridium difficile EutM protein
Descriptor: ETHANOLAMINE CARBOXYSOME STRUCTURAL PROTEIN, SULFATE ION
Authors:Pitts, A.C, Tuck, L.R, Faulds-Pain, A, Lewis, R.J, Marles-Wright, J.
Deposit date:2012-06-13
Release date:2012-06-20
Last modified:2023-12-20
Method:X-RAY DIFFRACTION (1.62 Å)
Cite:Structural Insight Into the Clostridium Difficile Ethanolamine Utilisation Microcompartment.
Plos One, 7, 2012
3ZNN
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BU of 3znn by Molmil
IN VITRO AND IN VIVO INHIBITION OF HUMAN D-AMINO ACID OXIDASE: REGULATION OF D-SERINE CONCENTRATION IN THE BRAIN
Descriptor: 4H-THIENO[3,2-B]PYROLE-5-CARBOXYLIC ACID, D-AMINO-ACID OXIDASE, FLAVIN-ADENINE DINUCLEOTIDE, ...
Authors:Hopkins, S.C, Heffernan, M.L.R, Saraswat, L.D, Bowen, C.A, Melnick, L, Hardy, L.W, Orsini, M.A, Allen, M.S, Koch, P, Spear, K.L, Foglesong, R.J, Soukri, M, Chytil, M, Fang, Q.K, Jones, S.W, Varney, M.A, Panatier, A, Oliet, S.H.R, Pollegioni, L, Piubelli, L, Molla, G, Nardini, M, Large, T.H.
Deposit date:2013-02-15
Release date:2013-05-15
Last modified:2023-12-20
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Structural, Kinetic, and Pharmacodynamic Mechanisms of D-Amino Acid Oxidase Inhibition by Small Molecules.
J.Med.Chem., 56, 2013
3ZS9
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BU of 3zs9 by Molmil
S. cerevisiae Get3-ADP-AlF4- complex with a cytosolic Get2 fragment
Descriptor: ADENOSINE-5'-DIPHOSPHATE, ATPASE GET3, GOLGI TO ER TRAFFIC PROTEIN 2, ...
Authors:Mariappan, M, Mateja, A, Dobosz, M, Bove, E, Hegde, R.S, Keenan, R.J.
Deposit date:2011-06-24
Release date:2011-09-07
Last modified:2023-12-20
Method:X-RAY DIFFRACTION (2.095 Å)
Cite:The Mechanism of Membrane-Associated Steps in Tail-Anchored Protein Insertion.
Nature, 477, 2011
3ZNP
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BU of 3znp by Molmil
IN VITRO AND IN VIVO INHIBITION OF HUMAN D-AMINO ACID OXIDASE: REGULATION OF D-SERINE CONCENTRATION IN THE BRAIN
Descriptor: 3-HYDROXY-2H-CHROMEN-2-ONE, D-AMINO-ACID OXIDASE, FLAVIN-ADENINE DINUCLEOTIDE, ...
Authors:Hopkins, S.C, Heffernan, M.L.R, Saraswat, L.D, Bowen, C.A, Melnick, L, Hardy, L.W, Orsini, M.A, Allen, M.S, Koch, P, Spear, K.L, Foglesong, R.J, Soukri, M, Chytil, M, Fang, Q.K, Jones, S.W, Varney, M.A, Panatier, A, Oliet, S.H.R, Pollegioni, L, Piubelli, L, Molla, G, Nardini, M, Large, T.H.
Deposit date:2013-02-15
Release date:2013-05-15
Last modified:2023-12-20
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:Structural, Kinetic, and Pharmacodynamic Mechanisms of D-Amino Acid Oxidase Inhibition by Small Molecules.
J.Med.Chem., 56, 2013
3ZNQ
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BU of 3znq by Molmil
IN VITRO AND IN VIVO INHIBITION OF HUMAN D-AMINO ACID OXIDASE: REGULATION OF D-SERINE CONCENTRATION IN THE BRAIN
Descriptor: 3-PHENETHYL-4H-FURO[3,2-B]PYRROLE-5-CARBOXYLIC ACID, D-AMINO-ACID OXIDASE, FLAVIN-ADENINE DINUCLEOTIDE
Authors:Hopkins, S.C, Heffernan, M.L.R, Saraswat, L.D, Bowen, C.A, Melnick, L, Hardy, L.W, Orsini, M.A, Allen, M.S, Koch, P, Spear, K.L, Foglesong, R.J, Soukri, M, Chytil, M, Fang, Q.K, Jones, S.W, Varney, M.A, Panatier, A, Oliet, S.H.R, Pollegioni, L, Piubelli, L, Molla, G, Nardini, M, Large, T.H.
Deposit date:2013-02-15
Release date:2013-05-15
Last modified:2023-12-20
Method:X-RAY DIFFRACTION (2.75 Å)
Cite:Structural, Kinetic, and Pharmacodynamic Mechanisms of D-Amino Acid Oxidase Inhibition by Small Molecules.
J.Med.Chem., 56, 2013
4AD4
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BU of 4ad4 by Molmil
Structure of the GH99 endo-alpha-mannosidase from Bacteroides xylanisolvens in complex with glucose-1,3-isofagomine and alpha-1,2- mannobiose
Descriptor: 5-HYDROXYMETHYL-3,4-DIHYDROXYPIPERIDINE, GLYCOSYL HYDROLASE FAMILY 71, alpha-D-glucopyranose, ...
Authors:Thompson, A.J, Williams, R.J, Hakki, Z, Alonzi, D.S, Wennekes, T, Gloster, T.M, Songsrirote, K, Thomas-Oates, J.E, Wrodnigg, T.M, Spreitz, J, Stuetz, A.E, Butters, T.D, Williams, S.J, Davies, G.J.
Deposit date:2011-12-21
Release date:2012-02-01
Last modified:2024-05-01
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Structural and Mechanistic Insight Into N-Glycan Processing by Endo-Alpha-Mannosidase.
Proc.Natl.Acad.Sci.USA, 109, 2012
4AKB
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BU of 4akb by Molmil
Structure of Galactose Binding lectin from Champedak (CGB) with Galactose
Descriptor: AGGLUTININ ALPHA CHAIN, AGGLUTININ BETA-4 CHAIN, HEXAETHYLENE GLYCOL, ...
Authors:Gabrielsen, M, Abdul-Rahman, P.S, Othman, S, Hashim, O.H, Cogdell, R.J.
Deposit date:2012-02-22
Release date:2013-02-27
Last modified:2023-12-20
Method:X-RAY DIFFRACTION (1.95 Å)
Cite:Structures and Binding Specificity of Galactose- and Mannose-Binding Lectins from Champedak: Differences from Jackfruit Lectins
Acta Crystallogr.,Sect.F, 70, 2014
4AAX
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BU of 4aax by Molmil
CpGH89CBM32-5, from Clostridium perfringens, in complex with N- acetylgalactosamine
Descriptor: 2-acetamido-2-deoxy-beta-D-galactopyranose, ALPHA-N-ACETYLGLUCOSAMINIDASE, CALCIUM ION, ...
Authors:Ficko-Blean, E, Stuart, C.P, Suits, M.D, Cid, M, Tessier, M, Woods, R.J, Boraston, A.B.
Deposit date:2011-12-05
Release date:2012-04-04
Last modified:2024-05-08
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Carbohydrate Recognition by an Architecturally Complex Alpha-N-Acetylglucosaminidase from Clostridium Perfringens.
Plos One, 7, 2012
4AB5
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BU of 4ab5 by Molmil
Regulatory domain structure of NMB2055 (MetR) a LysR family regulator from N. meningitidis
Descriptor: TRANSCRIPTIONAL REGULATOR, LYSR FAMILY
Authors:Sainsbury, S, Ren, J, Saunders, N.J, Stuart, D.I, Owens, R.J.
Deposit date:2011-12-07
Release date:2012-07-11
Method:X-RAY DIFFRACTION (2.51 Å)
Cite:Structure of the Regulatory Domain of the Lysr Family Regulator Nmb2055 (Metr-Like Protein) from Neisseria Meningitidis
Acta Crystallogr.,Sect.F, 68, 2012

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