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PDB: 2342 results

7WZO
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BU of 7wzo by Molmil
Crystal structure of the SARS-CoV-2 nucleocapsid protein N-terminal domain in complex with Ubl1
Descriptor: Nucleoprotein, nsp3
Authors:Ni, X.C, Zhou, R.J, Lei, J.
Deposit date:2022-02-18
Release date:2023-02-01
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (2.64 Å)
Cite:Structural insights into ribonucleoprotein dissociation by nucleocapsid protein interacting with non-structural protein 3 in SARS-CoV-2.
Commun Biol, 6, 2023
5EG2
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BU of 5eg2 by Molmil
SET7/9 N265A in complex with AdoHcy and TAF10 peptide
Descriptor: Histone-lysine N-methyltransferase SETD7, S-ADENOSYL-L-HOMOCYSTEINE, SODIUM ION, ...
Authors:Kroner, G.M, Fick, R.J, Trievel, R.C.
Deposit date:2015-10-26
Release date:2016-01-13
Last modified:2023-09-27
Method:X-RAY DIFFRACTION (1.55 Å)
Cite:Sulfur-Oxygen Chalcogen Bonding Mediates AdoMet Recognition in the Lysine Methyltransferase SET7/9.
Acs Chem.Biol., 11, 2016
6QGM
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BU of 6qgm by Molmil
VirX1 apo structure
Descriptor: VirX1
Authors:Gkotsi, D.S, Ludewig, H, Sharma, S.V, Unsworth, W.P, Taylor, R.J.K, McLachlan, M.M.W, Shanahan, S, Naismith, J.H, Goss, R.J.M.
Deposit date:2019-01-11
Release date:2019-10-30
Last modified:2024-01-24
Method:X-RAY DIFFRACTION (2.75 Å)
Cite:A marine viral halogenase that iodinates diverse substrates.
Nat.Chem., 11, 2019
6QNO
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BU of 6qno by Molmil
Rhodopsin-Gi protein complex
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, Fab antibody fragment heavy chain, Fab antibody fragment light chain, ...
Authors:Tsai, C.-J, Marino, J, Adaixo, R.J, Pamula, F, Muehle, J, Maeda, S, Flock, T, Taylor, N.M.I, Mohammed, I, Matile, H, Dawson, R.J.P, Deupi, X, Stahlberg, H, Schertler, G.F.X.
Deposit date:2019-02-11
Release date:2019-07-10
Last modified:2020-07-29
Method:ELECTRON MICROSCOPY (4.38 Å)
Cite:Cryo-EM structure of the rhodopsin-G alpha i-beta gamma complex reveals binding of the rhodopsin C-terminal tail to the G beta subunit.
Elife, 8, 2019
4LT5
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BU of 4lt5 by Molmil
Structure of a Naegleria Tet-like dioxygenase in complex with 5-methylcytosine DNA
Descriptor: 1,2-ETHANEDIOL, DNA, MANGANESE (II) ION, ...
Authors:Hashimoto, H, Pais, J.E, Zhang, X, Saleh, L, Fu, Z.Q, Dai, N, Correa, I.R, Roberts, R.J, Zheng, Y, Cheng, X.
Deposit date:2013-07-23
Release date:2013-12-18
Last modified:2024-02-28
Method:X-RAY DIFFRACTION (2.893 Å)
Cite:Structure of a Naegleria Tet-like dioxygenase in complex with 5-methylcytosine DNA.
Nature, 506, 2014
5LJ4
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BU of 5lj4 by Molmil
Crystal structure of DNA duplex containing ZP base pair
Descriptor: CALCIUM ION, ODN2
Authors:Agnew, C.R.J, Brady, R.L.
Deposit date:2016-07-17
Release date:2017-05-03
Last modified:2024-01-10
Method:X-RAY DIFFRACTION (2.17 Å)
Cite:Structural Basis of the Mispairing of an Artificially Expanded Genetic Information System
Chem, 1, 2016
5LQF
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BU of 5lqf by Molmil
CDK1/CyclinB1/CKS2 in complex with NU6102
Descriptor: Cyclin-dependent kinase 1, Cyclin-dependent kinases regulatory subunit 2, G2/mitotic-specific cyclin-B1, ...
Authors:Coxon, C.R, Anscombe, E, Harnor, S.J, Martin, M.P, Carbain, B.J, Hardcastle, I.R, Harlow, L.K, Korolchuk, S, Matheson, C.J, Noble, M.E, Newell, D.R, Turner, D.M, Sivaprakasam, M, Wang, L.Z, Wong, C, Golding, B.T, Griffin, R.J, Endicott, J.A, Cano, C.
Deposit date:2016-08-17
Release date:2017-01-11
Last modified:2024-01-10
Method:X-RAY DIFFRACTION (2.06 Å)
Cite:Cyclin-Dependent Kinase (CDK) Inhibitors: Structure-Activity Relationships and Insights into the CDK-2 Selectivity of 6-Substituted 2-Arylaminopurines.
J. Med. Chem., 60, 2017
4MDO
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BU of 4mdo by Molmil
Crystal structure of a GH1 beta-glucosidase from the fungus Humicola insolens
Descriptor: 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL, Beta-glucosidase, DI(HYDROXYETHYL)ETHER, ...
Authors:Giuseppe, P.O, Souza, T.A.C.B, Souza, F.H.M, Zanphorlin, L.M, Machado, C.B, Ward, R.J, Jorge, J.A, Furriel, R.P.M, Murakami, M.T.
Deposit date:2013-08-23
Release date:2014-06-25
Last modified:2024-02-28
Method:X-RAY DIFFRACTION (2.6 Å)
Cite:Structural basis for glucose tolerance in GH1 beta-glucosidases.
Acta Crystallogr.,Sect.D, 70, 2014
6ZM3
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BU of 6zm3 by Molmil
The structure of an E2 ubiquitin-conjugating complex (UBC2-UEV1) essential for Leishmania amastigote differentiation
Descriptor: Putative ubiquitin-conjugating enzyme e2, Ubiquitin-conjugating enzyme-like protein
Authors:Burge, R.J, Dodson, E.J, Wilkinson, A.J, Mottram, J.C.
Deposit date:2020-07-01
Release date:2020-07-22
Last modified:2024-01-31
Method:X-RAY DIFFRACTION (1.7 Å)
Cite:Leishmania differentiation requires ubiquitin conjugation mediated by a UBC2-UEV1 E2 complex.
Plos Pathog., 16, 2020
7BN9
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BU of 7bn9 by Molmil
Crystal Structure of Bacillus subtilis Penicillin Binding Protein 3
Descriptor: Penicillin-binding protein 3
Authors:Rao, V.A, Lewis, R.J.
Deposit date:2021-01-21
Release date:2022-03-02
Last modified:2024-01-31
Method:X-RAY DIFFRACTION (2.65 Å)
Cite:Cooperation between peptidoglycan transpeptidases and SEDS proteins in Bacillus subtilis cell division
To Be Published
6U1N
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BU of 6u1n by Molmil
GPCR-Beta arrestin structure in lipid bilayer
Descriptor: 3-amino-5-chloro-N-cyclopropyl-4-methyl-6-[2-(4-methylpiperazin-1-yl)-2-oxoethoxy]thieno[2,3-b]pyridine-2-carboxamide, Beta-arrestin-1, Fab30 heavy chain, ...
Authors:Staus, D.P, Hu, H, Robertson, M.J, Kleinhenz, A.L.W, Wingler, L.M, Capel, W.D, Latorraca, N.R, Lefkowitz, R.J, Skiniotis, G.
Deposit date:2019-08-16
Release date:2020-02-26
Last modified:2020-03-25
Method:ELECTRON MICROSCOPY (4 Å)
Cite:Structure of the M2 muscarinic receptor-beta-arrestin complex in a lipid nanodisc.
Nature, 579, 2020
6ZUK
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BU of 6zuk by Molmil
Crystal structure of dimethylated RSL-N23H/G68H (RSL-B6) in complex with cucurbit[7]uril and zinc
Descriptor: Fucose-binding lectin protein, GLYCEROL, SODIUM ION, ...
Authors:Guagnini, F, Engilberge, S, Flood, R.J, Ramberg, K.O, Crowley, P.B.
Deposit date:2020-07-23
Release date:2020-11-25
Last modified:2024-01-31
Method:X-RAY DIFFRACTION (2.03 Å)
Cite:Metal-Mediated Protein-Cucurbituril Crystalline Architectures
Cryst.Growth Des., 2020
4DXF
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BU of 4dxf by Molmil
Crystal structure of Staphylococcal Superantigen-Like protein 4
Descriptor: CHLORIDE ION, GLYCEROL, Staphylococcal enterotoxin-like toxin
Authors:Hermans, S.J, Baker, H.M, Langley, R.J, Baker, E.N, Fraser, J.F.
Deposit date:2012-02-27
Release date:2012-09-19
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (1.7 Å)
Cite:Structural and functional properties of staphylococcal superantigen-like protein 4
Infect.Immun., 80, 2012
6ZQ3
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BU of 6zq3 by Molmil
Crystal Structure of Silicatein Alpha from Marine Sponge Tethya aurantium
Descriptor: Silicatein alpha
Authors:Goerlich, S, Leonarski, R.J, Tomizaki, T, Zlotnikov, I.
Deposit date:2020-07-09
Release date:2020-12-02
Last modified:2024-01-31
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:Natural hybrid silica/protein superstructure at atomic resolution.
Proc.Natl.Acad.Sci.USA, 117, 2020
4DE9
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BU of 4de9 by Molmil
LytR-CPS2A-psr family protein YwtF (TagT) with bound octaprenyl pyrophosphate lipid
Descriptor: (2Z,6Z,10Z,14Z,18Z,22E,26E)-3,7,11,15,19,23,27,31-octamethyldotriaconta-2,6,10,14,18,22,26,30-octaen-1-yl trihydrogen diphosphate, Putative transcriptional regulator ywtF
Authors:Eberhardt, A, Hoyland, C.N, Vollmer, D, Bisle, S, Cleverley, R.M, Johnsborg, O, Havarstein, S, Lewis, R.J, Vollmer, W.
Deposit date:2012-01-20
Release date:2012-04-04
Last modified:2024-02-28
Method:X-RAY DIFFRACTION (1.787 Å)
Cite:Attachment of Capsular Polysaccharide to the Cell Wall in Streptococcus pneumoniae.
Microb Drug Resist, 18, 2012
5WCX
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BU of 5wcx by Molmil
Streptococcus pyogenes phosphoglycerol transferase GacH in complex with sn-glycerol-1-phosphate, crystal form 1
Descriptor: CALCIUM ION, MANGANESE (II) ION, Phosphoglycerol transferase GacH, ...
Authors:Edgar, R.J, Korotkova, N, Korotkov, K.V.
Deposit date:2017-07-02
Release date:2018-07-11
Last modified:2023-10-04
Method:X-RAY DIFFRACTION (2 Å)
Cite:Phosphoglycerol transferase GacH from Streptococcus pyogenes
To be published
5WEY
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BU of 5wey by Molmil
Joint X-ray/neutron structure of Concanavalin A with alpha1-2 D-mannobiose
Descriptor: CALCIUM ION, Concanavalin-A, MANGANESE (II) ION, ...
Authors:Kovalevsky, A, Gerlits, O.O, Woods, R.J.
Deposit date:2017-07-11
Release date:2017-09-13
Last modified:2023-10-04
Method:NEUTRON DIFFRACTION (1.8 Å), X-RAY DIFFRACTION
Cite:Mannobiose Binding Induces Changes in Hydrogen Bonding and Protonation States of Acidic Residues in Concanavalin A As Revealed by Neutron Crystallography.
Biochemistry, 56, 2017
6U01
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BU of 6u01 by Molmil
Dihydrodipicolinate synthase (DHDPS) from C.jejuni, N84D mutant with pyruvate bound in the active site
Descriptor: 1,2-ETHANEDIOL, 4-hydroxy-tetrahydrodipicolinate synthase, ACETATE ION, ...
Authors:Saran, S, Majdi Yazdi, M, Lehnert, L, Palmer, D.R.J, Sanders, D.A.R.
Deposit date:2019-08-13
Release date:2019-12-04
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (1.87 Å)
Cite:Asparagine-84, a regulatory allosteric site residue, helps maintain the quaternary structure of Campylobacter jejuni dihydrodipicolinate synthase.
J.Struct.Biol., 209, 2020
4DXG
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BU of 4dxg by Molmil
Crystal structure of Staphylococcal Superantigen-Like protein 4 complexed with sialyl Lewis X
Descriptor: CHLORIDE ION, N-acetyl-alpha-neuraminic acid-(2-3)-beta-D-galactopyranose-(1-4)-[alpha-L-fucopyranose-(1-3)]2-acetamido-2-deoxy-alpha-D-glucopyranose, PIPERAZINE-N,N'-BIS(2-ETHANESULFONIC ACID), ...
Authors:Hermans, S.J, Baker, H.M, Langley, R.J, Baker, E.N, Fraser, J.F.
Deposit date:2012-02-27
Release date:2012-09-19
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:Structural and functional properties of staphylococcal superantigen-like protein 4
Infect.Immun., 80, 2012
6TZU
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BU of 6tzu by Molmil
Dihydrodipicolinate synthase (DHDPS) from C.jejuni, N84A mutant with pyruvate bound in the active site
Descriptor: 1,2-ETHANEDIOL, 4-hydroxy-tetrahydrodipicolinate synthase, ACETATE ION, ...
Authors:Saran, S, Majdi Yazdi, M, Lehnert, C, Palmer, D.R.J, Sanders, D.A.R.
Deposit date:2019-08-13
Release date:2019-12-04
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Asparagine-84, a regulatory allosteric site residue, helps maintain the quaternary structure of Campylobacter jejuni dihydrodipicolinate synthase.
J.Struct.Biol., 209, 2020
5WBN
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BU of 5wbn by Molmil
Crystal structure of fragment 3-(3-Benzyl-2-oxo-2H-[1,2,4]triazino[2,3-c]quinazolin-6-yl)propanoic acid bound in the ubiquitin binding pocket of the HDAC6 zinc-finger domain
Descriptor: 3-(3-benzyl-2-oxo-2H-[1,2,4]triazino[2,3-c]quinazolin-6-yl)propanoic acid, ACETATE ION, CHLORIDE ION, ...
Authors:Harding, R.J, Walker, J.R, Ferreira de Freitas, R, Ravichandran, M, Santhakumar, V, Schapira, M, Bountra, C, Edwards, A.M, Arrowsmith, C.H.
Deposit date:2017-06-29
Release date:2017-08-02
Last modified:2024-03-13
Method:X-RAY DIFFRACTION (1.64 Å)
Cite:Crystal structure of fragment 3-(3-Benzyl-2-oxo-2H-[1,2,4]triazino[2,3-c]quinazolin-6-yl)propanoic acid bound in the ubiquitin binding pocket of the HDAC6 zinc-finger domain
To be published
5FTL
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BU of 5ftl by Molmil
Cryo-EM structure of human p97 bound to ATPgS (Conformation I)
Descriptor: ADENOSINE-5'-DIPHOSPHATE, TRANSITIONAL ENDOPLASMIC RETICULUM ATPASE
Authors:Banerjee, S, Bartesaghi, A, Merk, A, Rao, P, Bulfer, S.L, Yan, Y, Green, N, Mroczkowski, B, Neitz, R.J, Wipf, P, Falconieri, V, Deshaies, R.J, Milne, J.L.S, Huryn, D, Arkin, M, Subramaniam, S.
Deposit date:2016-01-14
Release date:2016-01-27
Last modified:2024-05-08
Method:ELECTRON MICROSCOPY (3.3 Å)
Cite:2.3 A Resolution Cryo-Em Structure of Human P97 and Mechanism of Allosteric Inhibition
Science, 351, 2016
7D5G
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BU of 7d5g by Molmil
Crystal structure of the CsCE with ligand to have a insight into the catalytic mechanism
Descriptor: CHLORIDE ION, Cellobiose 2-epimerase, beta-D-glucopyranose-(1-4)-beta-D-fructofuranose
Authors:Yang, R.J, Feng, Y.H, Andrew, J.F.
Deposit date:2020-09-25
Release date:2021-12-01
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (1.6 Å)
Cite:Crystal structure of the CsCE with ligand to have a insight into the catalytic mechanism
To Be Published
5JIL
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BU of 5jil by Molmil
Crystal structure of rat coronavirus strain New-Jersey Hemagglutinin-Esterase in complex with 4N-acetyl sialic acid
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, Hemagglutinin-esterase, ...
Authors:Bakkers, M.J.G, Feitsma, L.J, de Groot, R.J, Huizinga, E.G.
Deposit date:2016-04-22
Release date:2016-05-11
Last modified:2024-05-01
Method:X-RAY DIFFRACTION (1.85 Å)
Cite:Coronavirus receptor switch explained from the stereochemistry of protein-carbohydrate interactions and a single mutation.
Proc.Natl.Acad.Sci.USA, 113, 2016
5JIF
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BU of 5jif by Molmil
Crystal structure of mouse hepatitis virus strain DVIM Hemagglutinin-Esterase
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, GLYCEROL, ...
Authors:Zeng, Q.H, Bakkers, M.J.G, Feitsma, L.J, de Groot, R.J, Huizinga, E.G.
Deposit date:2016-04-22
Release date:2016-05-11
Last modified:2024-05-01
Method:X-RAY DIFFRACTION (2 Å)
Cite:Coronavirus receptor switch explained from the stereochemistry of protein-carbohydrate interactions and a single mutation.
Proc.Natl.Acad.Sci.USA, 113, 2016

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