Loading
PDBj
MenuPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help
PDB: 27201 results

5Z40
DownloadVisualize
BU of 5z40 by Molmil
Crystal structure of pyrrolidone carboxylate peptidase I from Deionococcus radiodurans R1
Descriptor: Pyrrolidone-carboxylate peptidase
Authors:Agrawal, R, Kumar, A, Makde, R.D.
Deposit date:2018-01-09
Release date:2019-01-16
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (1.837 Å)
Cite:Crystal structures of pyrrolidone carboxylate peptidase I from Deionococcus radiodurans reveal the mechanism of L-pyroglutamate recognition
To Be Published
1JAJ
DownloadVisualize
BU of 1jaj by Molmil
Solution Structure of DNA Polymerase X from the African Swine Fever Virus
Descriptor: DNA POLYMERASE BETA-LIKE PROTEIN
Authors:Maciejewski, M.W, Shin, R, Pan, B, Mullen, G.P.
Deposit date:2001-05-30
Release date:2001-10-31
Last modified:2024-05-01
Method:SOLUTION NMR
Cite:Solution structure of a viral DNA repair polymerase.
Nat.Struct.Biol., 8, 2001
5UQC
DownloadVisualize
BU of 5uqc by Molmil
Crystal structure of mouse CRMP2
Descriptor: 2-(2-{2-[2-(2-METHOXY-ETHOXY)-ETHOXY]-ETHOXY}-ETHOXY)-ETHANOL, Dihydropyrimidinase-related protein 2
Authors:Khanna, M, Khanna, R, Perez-Miller, S, Francois-Moutal, L.
Deposit date:2017-02-07
Release date:2017-03-22
Last modified:2023-10-04
Method:X-RAY DIFFRACTION (1.78 Å)
Cite:A single structurally conserved SUMOylation site in CRMP2 controls NaV1.7 function.
Channels (Austin), 11, 2017
5URK
DownloadVisualize
BU of 5urk by Molmil
Crystal structure of human BRR2 in complex with T-3935799
Descriptor: 6-benzyl-3-[3-(benzyloxy)phenyl]-4,6-dihydropyrido[4,3-d]pyrimidine-2,7(1H,3H)-dione, GLYCEROL, U5 small nuclear ribonucleoprotein 200 kDa helicase
Authors:Qin, L, Tjhen, R, Klein, M.G.
Deposit date:2017-02-10
Release date:2017-07-19
Last modified:2024-03-06
Method:X-RAY DIFFRACTION (2.95 Å)
Cite:Discovery of Allosteric Inhibitors Targeting the Spliceosomal RNA Helicase Brr2.
J. Med. Chem., 60, 2017
5VA1
DownloadVisualize
BU of 5va1 by Molmil
Cryo-EM structure of the human ether-a-go-go related K+ channel
Descriptor: Potassium voltage-gated channel subfamily H member 2
Authors:Wang, W.W, MacKinnon, R.
Deposit date:2017-03-24
Release date:2017-05-03
Last modified:2024-03-13
Method:ELECTRON MICROSCOPY (3.7 Å)
Cite:Cryo-EM Structure of the Open Human Ether-a-go-go-Related K(+) Channel hERG.
Cell, 169, 2017
1JRX
DownloadVisualize
BU of 1jrx by Molmil
Crystal structure of Arg402Ala mutant flavocytochrome c3 from Shewanella frigidimarina
Descriptor: FLAVIN-ADENINE DINUCLEOTIDE, FLAVOCYTOCHROME C, FUMARIC ACID, ...
Authors:Mowat, C.G, Moysey, R, Miles, C.S, Leys, D, Doherty, M.K, Taylor, P, Walkinshaw, M.D, Reid, G.A, Chapman, S.K.
Deposit date:2001-08-15
Release date:2001-11-02
Last modified:2023-11-15
Method:X-RAY DIFFRACTION (2 Å)
Cite:Kinetic and crystallographic analysis of the key active site acid/base arginine in a soluble fumarate reductase.
Biochemistry, 40, 2001
5Z7P
DownloadVisualize
BU of 5z7p by Molmil
SmChiA sliding-intermediate with chitotriose
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, Chitinase A, GLYCEROL
Authors:Nakamura, A, Iino, R.
Deposit date:2018-01-30
Release date:2018-09-26
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (2 Å)
Cite:Processive chitinase is Brownian monorail operated by fast catalysis after peeling rail from crystalline chitin.
Nat Commun, 9, 2018
5X6V
DownloadVisualize
BU of 5x6v by Molmil
Crystal structure of human heteroheptameric complex
Descriptor: ACETATE ION, Ragulator complex protein LAMTOR1, Ragulator complex protein LAMTOR2, ...
Authors:Yonehara, R, Nada, S, Nakai, T, Nakai, M, Kitamura, A, Ogawa, A, Nakatsumi, H, Nakayama, K.I, Li, S, Standley, D.M, Yamashita, E, Nakagawa, A, Okada, M.
Deposit date:2017-02-23
Release date:2017-12-06
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (2.02 Å)
Cite:Structural basis for the assembly of the Ragulator-Rag GTPase complex.
Nat Commun, 8, 2017
5UZU
DownloadVisualize
BU of 5uzu by Molmil
Immune evasion by a Staphylococcal Peroxidase Inhibitor that blocks myeloperoxidase
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, CALCIUM ION, ...
Authors:de Jong, N, Geisbrecht, B.V, van Strijp, J, Haas, P, Nijland, R, Ramyar, K, Fevre, C, Guerra, F, Voyich-Kane, J, van Kessel, C, Garcia, B.
Deposit date:2017-02-27
Release date:2017-07-26
Last modified:2023-11-15
Method:X-RAY DIFFRACTION (2.403 Å)
Cite:Immune evasion by a staphylococcal inhibitor of myeloperoxidase.
Proc. Natl. Acad. Sci. U.S.A., 114, 2017
4MZP
DownloadVisualize
BU of 4mzp by Molmil
MazF from S. aureus crystal form III, C2221, 2.7 A
Descriptor: MazF mRNA interferase
Authors:Zorzini, V, Loris, R, van Nuland, N.A.J, Cheung, A.
Deposit date:2013-09-30
Release date:2014-05-21
Last modified:2023-09-20
Method:X-RAY DIFFRACTION (2.702 Å)
Cite:Structural and biophysical characterization of Staphylococcus aureus SaMazF shows conservation of functional dynamics.
Nucleic Acids Res., 42, 2014
8BCP
DownloadVisualize
BU of 8bcp by Molmil
Cryo-EM structure of the proximal end of bacteriophage T5 tail : p142 tail terminator protein hexamer and pb6 tail tube protein trimer
Descriptor: Tail tube protein, Tail tube terminator protein p142
Authors:Linares, R, Effantin, G, Breyton, C.
Deposit date:2022-10-17
Release date:2023-11-01
Method:ELECTRON MICROSCOPY (3.88 Å)
Cite:Cryo-EM structure of the proximal end of bacteriophage T5 tail, in its native state and after interaction with its bacterial receptor
To Be Published
8BJM
DownloadVisualize
BU of 8bjm by Molmil
Human full length RAD52 undecamer.
Descriptor: DNA repair protein RAD52 homolog
Authors:Marotta, R, Balboni, B, Girotto, S, Cavalli, A.
Deposit date:2022-11-04
Release date:2023-11-15
Last modified:2024-05-29
Method:ELECTRON MICROSCOPY (2.2 Å)
Cite:Novel structural insights on full-length human RAD52: Cryo-EM and beyond
Biorxiv, 2023
8BD2
DownloadVisualize
BU of 8bd2 by Molmil
Calcium-bound Calmodulin variant G113R
Descriptor: CALCIUM ION, Calmodulin-3
Authors:Wimmer, R, Holler, C.V, Petersson, N.M, Iwai, H, Niemelae, M.A, Brohus, M, Overgaard, M.T.
Deposit date:2022-10-18
Release date:2023-11-08
Last modified:2024-01-17
Method:SOLUTION NMR
Cite:Allosteric changes in protein stability and dynamics as pathogenic mechanism for calmodulin variants not affecting Ca 2+ coordinating residues.
Cell Calcium, 117, 2023
1JV9
DownloadVisualize
BU of 1jv9 by Molmil
NMR Structure of BPTI Mutant G37A
Descriptor: TRYPSIN INHIBITOR
Authors:Battiste, J.L, Li, R, Woodward, C.
Deposit date:2001-08-28
Release date:2001-09-12
Last modified:2021-10-27
Method:SOLUTION NMR
Cite:A highly destabilizing mutation, G37A, of the bovine pancreatic trypsin inhibitor retains the average native conformation but greatly increases local flexibility
Biochemistry, 41, 2002
5XKR
DownloadVisualize
BU of 5xkr by Molmil
Crystal structure of Msmeg3575 in complex with benzoguanamine
Descriptor: 6-phenyl-1,3,5-triazine-2,4-diamine, ACETATE ION, CMP/dCMP deaminase, ...
Authors:Gaded, V.M, Anand, R.
Deposit date:2017-05-09
Release date:2017-08-09
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (1.38 Å)
Cite:Selective Deamination of Mutagens by a Mycobacterial Enzyme
J. Am. Chem. Soc., 139, 2017
5UZS
DownloadVisualize
BU of 5uzs by Molmil
Crystal Structure of Inosine 5'-monophosphate Dehydrogenase from Clostridium perfringens Complexed with IMP and P200
Descriptor: 1,2-ETHANEDIOL, 3-(2-{[(4-chlorophenyl)carbamoyl]amino}propan-2-yl)-N-hydroxybenzene-1-carboximidamide, DI(HYDROXYETHYL)ETHER, ...
Authors:Maltseva, N, Kim, Y, Mulligan, R, Makowska-Grzyska, M, Gu, M, Gollapalli, D.R, Hedstrom, L, Joachimiak, A, Anderson, W.F, Center for Structural Genomics of Infectious Diseases (CSGID)
Deposit date:2017-02-27
Release date:2017-03-22
Last modified:2020-01-01
Method:X-RAY DIFFRACTION (2.367 Å)
Cite:Crystal Structure of Inosine 5'-monophosphate Dehydrogenase from Clostridium perfringens Complexed with IMP and P200
To Be Published
1Y5V
DownloadVisualize
BU of 1y5v by Molmil
tRNA-Guanine Transglycosylase (TGT) in complex with 6-Amino-4-(2-phenylethyl)-1,7-dihydro-8H-imidazo[4,5-g]quinazolin-8-one
Descriptor: 6-AMINO-4-(2-PHENYLETHYL)-1,7-DIHYDRO-8H-IMIDAZO[4,5-G]QUINAZOLIN-8-ONE, GLYCEROL, Queuine tRNA-ribosyltransferase, ...
Authors:Stengl, B, Meyer, E.A, Heine, A, Brenk, R, Diederich, F, Klebe, G.
Deposit date:2004-12-03
Release date:2005-12-13
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (1.58 Å)
Cite:Crystal structures of tRNA-guanine transglycosylase (TGT) in complex with novel and potent inhibitors unravel pronounced induced-fit adaptations and suggest dimer formation upon substrate binding
J.Mol.Biol., 370, 2007
1LHK
DownloadVisualize
BU of 1lhk by Molmil
ROLE OF PROLINE RESIDUES IN HUMAN LYSOZYME STABILITY: A SCANNING CALORIMETRIC STUDY COMBINED WITH X-RAY STRUCTURE ANALYSIS OF PROLINE MUTANTS
Descriptor: HUMAN LYSOZYME
Authors:Inaka, K, Matsushima, M, Herning, T, Kuroki, R, Yutani, K, Kikuchi, M.
Deposit date:1992-03-27
Release date:1994-01-31
Last modified:2017-11-29
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Role of proline residues in human lysozyme stability: a scanning calorimetric study combined with X-ray structure analysis of proline mutants.
Biochemistry, 31, 1992
1REV
DownloadVisualize
BU of 1rev by Molmil
HIV-1 REVERSE TRANSCRIPTASE
Descriptor: 4-CHLORO-8-METHYL-7-(3-METHYL-BUT-2-ENYL)-6,7,8,9-TETRAHYDRO-2H-2,7,9A-TRIAZA-BENZO[CD]AZULENE-1-THIONE, HIV-1 REVERSE TRANSCRIPTASE, MAGNESIUM ION
Authors:Ren, J, Esnouf, R, Hopkins, A, Ross, C, Jones, Y, Stammers, D, Stuart, D.
Deposit date:1995-09-17
Release date:1996-10-14
Last modified:2024-06-05
Method:X-RAY DIFFRACTION (2.6 Å)
Cite:The structure of HIV-1 reverse transcriptase complexed with 9-chloro-TIBO: lessons for inhibitor design.
Structure, 3, 1995
8BM3
DownloadVisualize
BU of 8bm3 by Molmil
H207A mutant of E. coli PgpB, a PAP2 type phosphatidyl glycerol phosphate and C55-PP phosphatase, in complex with farnesyl pyrophosphate
Descriptor: FARNESYL DIPHOSPHATE, Phosphatidylglycerophosphatase B
Authors:Delbrassine, F, El Ghachi, M, Lambion, A, Herman, R, Kerff, F.
Deposit date:2022-11-10
Release date:2023-11-22
Method:X-RAY DIFFRACTION (3.5 Å)
Cite:H207A mutant of E. coli PgpB, a PAP2 type phosphatidyl glycerol phosphate and C55-PP phosphatase, in complex with farnesyl pyrophosphate
To Be Published
1Q8P
DownloadVisualize
BU of 1q8p by Molmil
Pterocarpus angolensis lectin PAL in complex with the dimannoside Man(alpha1-3)Man
Descriptor: CALCIUM ION, MANGANESE (II) ION, alpha-D-mannopyranose-(1-3)-methyl alpha-D-mannopyranoside, ...
Authors:Loris, R, Van Walle, I, De Greve, H, Beeckmans, S, Deboeck, F, Wyns, L, Bouckaert, J.
Deposit date:2003-08-22
Release date:2004-02-10
Last modified:2020-07-29
Method:X-RAY DIFFRACTION (1.75 Å)
Cite:Structural Basis of Oligomannose Recognition by the Pterocarpus angolensis Seed Lectin
J.Mol.Biol., 335, 2004
1LHT
DownloadVisualize
BU of 1lht by Molmil
LOGGERHEAD SEA TURTLE MYOGLOBIN (CYANO-MET)
Descriptor: CYANIDE ION, MYOGLOBIN, PROTOPORPHYRIN IX CONTAINING FE
Authors:Nardini, M, Tarricone, C, Lania, A, Desideri, A, De Sanctis, G, Coletta, M, Petruzzelli, R, Ascenzi, P, Coda, A, Bolognesi, M.
Deposit date:1995-02-01
Release date:1995-06-03
Last modified:2024-02-14
Method:X-RAY DIFFRACTION (2 Å)
Cite:Reptile heme protein structure: X-ray crystallographic study of the aquo-met and cyano-met derivatives of the loggerhead sea turtle (Caretta caretta) myoglobin at 2.0 A resolution.
J.Mol.Biol., 247, 1995
5VCM
DownloadVisualize
BU of 5vcm by Molmil
Alpha-1,6-mannosyl-glycoprotein 2-beta-N-acetylglucosaminyltransferase with bound UDP and Manganese
Descriptor: 1,2-ETHANEDIOL, 2-acetamido-2-deoxy-beta-D-glucopyranose, Alpha-1,6-mannosyl-glycoprotein 2-beta-N-acetylglucosaminyltransferase, ...
Authors:Sanders, J.H, Kadirvelraj, R, Wood, Z.A.
Deposit date:2017-03-31
Release date:2018-04-11
Last modified:2020-07-29
Method:X-RAY DIFFRACTION (1.599 Å)
Cite:HumanN-acetylglucosaminyltransferase II substrate recognition uses a modular architecture that includes a convergent exosite.
Proc. Natl. Acad. Sci. U.S.A., 115, 2018
5XQP
DownloadVisualize
BU of 5xqp by Molmil
Crystal structure of Notched-fin eelpout type III antifreeze protein (NFE6, AFP), P212121 form
Descriptor: Ice-structuring protein, SULFATE ION
Authors:Adachi, M, Shimizu, R, Shibazaki, C, Kondo, H, Tsuda, S.
Deposit date:2017-06-07
Release date:2018-05-16
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (1 Å)
Cite:Polypentagonal ice-like water networks emerge solely in an activity-improved variant of ice-binding protein
Proc. Natl. Acad. Sci. U.S.A., 115, 2018
5TRR
DownloadVisualize
BU of 5trr by Molmil
Structure of Mycobacterium tuberculosis proteasome in complex with N,C-capped dipeptide PKS2169
Descriptor: N,N-diethyl-N~2~-(3-phenylpropanoyl)-L-asparaginyl-N-[(naphthalen-1-yl)methyl]-L-alaninamide, Proteasome subunit alpha, Proteasome subunit beta
Authors:Hsu, H.-C, Fan, H, Singh, P.K, Wang, R, Sukenick, G, Nathan, C, Lin, G, Li, H.
Deposit date:2016-10-27
Release date:2017-01-11
Last modified:2023-10-04
Method:X-RAY DIFFRACTION (3.103 Å)
Cite:Structural Basis for the Species-Selective Binding of N,C-Capped Dipeptides to the Mycobacterium tuberculosis Proteasome.
Biochemistry, 56, 2017

222624

PDB entries from 2024-07-17

PDB statisticsPDBj update infoContact PDBjnumon