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PDB: 27265 results

6Y2Q
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BU of 6y2q by Molmil
Escherichia coli RnlA endoribonuclease
Descriptor: CHLORIDE ION, mRNA endoribonuclease toxin LS
Authors:Garcia-Rodriguez, G, Loris, R.
Deposit date:2020-02-17
Release date:2021-05-12
Last modified:2024-01-24
Method:X-RAY DIFFRACTION (2.99 Å)
Cite:Alternative dimerization is required for activity and inhibition of the HEPN ribonuclease RnlA.
Nucleic Acids Res., 49, 2021
7ZV5
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BU of 7zv5 by Molmil
Crystal structure of SARS Cov-2 main protease in complex with an inhibitor 4
Descriptor: 3C-like proteinase nsp5, DIMETHYL SULFOXIDE, inhibitor TRIP5
Authors:Rahimova, R, Di Micco, S, Marquez, J.A.
Deposit date:2022-05-13
Release date:2022-11-30
Last modified:2024-01-31
Method:X-RAY DIFFRACTION (1.999 Å)
Cite:Rational design of the zonulin inhibitor AT1001 derivatives as potential anti SARS-CoV-2.
Eur.J.Med.Chem., 244, 2022
6YQ5
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BU of 6yq5 by Molmil
Hybrid structure of the SPP1 tail tube by solid-state NMR and cryo EM - NMR Ensemble
Descriptor: Tail tube protein gp17.1*
Authors:Zinke, M, Sachowsky, K.A.A, Zinn-Justin, S, Ravelli, R, Schroder, G.F, Habeck, M, Lange, A.
Deposit date:2020-04-16
Release date:2020-10-14
Last modified:2024-07-10
Method:ELECTRON MICROSCOPY (4 Å), SOLID-STATE NMR
Cite:Architecture of the flexible tail tube of bacteriophage SPP1.
Nat Commun, 11, 2020
6YVW
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BU of 6yvw by Molmil
HIF prolyl hydroxylase 2 (PHD2/ EGLN1) in complex with monocyclic BB-328
Descriptor: 4-[(5-bromanyl-4,6-dimethyl-pyridin-2-yl)amino]-4-oxidanylidene-butanoic acid, Egl nine homolog 1, FE (III) ION, ...
Authors:Chowdhury, R, Banerji, B, Schofield, C.J.
Deposit date:2020-04-28
Release date:2020-12-30
Last modified:2024-01-24
Method:X-RAY DIFFRACTION (1.97 Å)
Cite:Use of cyclic peptides to induce crystallization: case study with prolyl hydroxylase domain 2.
Sci Rep, 10, 2020
6YW1
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BU of 6yw1 by Molmil
HIF prolyl hydroxylase 2 (PHD2/ EGLN1) in complex with 2OG and RaPID-derived silent allosteric cyclic peptide 3C (14-mer)
Descriptor: 2-OXOGLUTARIC ACID, BICARBONATE ION, Egl nine homolog 1, ...
Authors:Chowdhury, R, Schofield, C.J.
Deposit date:2020-04-29
Release date:2020-12-30
Last modified:2024-01-24
Method:X-RAY DIFFRACTION (1.46 Å)
Cite:Use of cyclic peptides to induce crystallization: case study with prolyl hydroxylase domain 2.
Sci Rep, 10, 2020
3W63
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BU of 3w63 by Molmil
MamM-CTD 215-293
Descriptor: Magnetosome protein MamM, SULFATE ION
Authors:Zeytuni, N, Davidov, G, Zarivach, R.
Deposit date:2013-02-10
Release date:2014-04-16
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Cation diffusion facilitators transport initiation and regulation is mediated by cation induced conformational changes of the cytoplasmic domain
Plos One, 9, 2014
6YW3
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BU of 6yw3 by Molmil
HIF PROLYL HYDROXYLASE 2 (PHD2/ EGLN1) in complex with N-Oxalyl Glycine (NOG), HIF-1ALPHA CODD (556-574) and a RaPID-derived cyclic peptide 3C (14-mer)
Descriptor: Egl nine homolog 1, GLYCEROL, Hypoxia-inducible factor 1-alpha, ...
Authors:Chowdhury, R, Schofield, C.J.
Deposit date:2020-04-29
Release date:2020-12-30
Last modified:2024-01-24
Method:X-RAY DIFFRACTION (2.279 Å)
Cite:Use of cyclic peptides to induce crystallization: case study with prolyl hydroxylase domain 2.
Sci Rep, 10, 2020
3W5Y
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BU of 3w5y by Molmil
MamM-CTD
Descriptor: Magnetosome protein MamM, SULFATE ION
Authors:Zeytuni, N, Davidov, G, Zarivach, R.
Deposit date:2013-02-10
Release date:2014-04-16
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (1.95 Å)
Cite:Cation diffusion facilitators transport initiation and regulation is mediated by cation induced conformational changes of the cytoplasmic domain
Plos One, 9, 2014
3W65
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BU of 3w65 by Molmil
MamM-CTD D249A and H264A
Descriptor: Magnetosome protein MamM, SULFATE ION
Authors:Zeytuni, N, Davidov, G, Zarivach, R.
Deposit date:2013-02-10
Release date:2014-04-16
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (2.37 Å)
Cite:Cation diffusion facilitators transport initiation and regulation is mediated by cation induced conformational changes of the cytoplasmic domain
Plos One, 9, 2014
2WF3
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BU of 2wf3 by Molmil
Human BACE-1 in complex with 6-(ethylamino)-N-((1S,2R)-2-hydroxy-3-(((3-(methyloxy)phenyl)methyl)amino)-1-(phenylmethyl)propyl)-1-methyl-1, 3,4,5-tetrahydro-2,1-benzothiazepine-8-carboxamide 2,2-dioxide
Descriptor: BETA-SECRETASE 1, GLYCEROL, N-{(1S,2R)-1-BENZYL-2-HYDROXY-3-[(3-METHOXYBENZYL)AMINO]PROPYL}-6-(ETHYLAMINO)-1-METHYL-1,3,4,5-TETRAHYDRO-2,1-BENZOTHIAZEPINE-8-CARBOXAMIDE 2,2-DIOXIDE
Authors:Charrier, N, Clarke, B, Demont, E, Dingwall, C, Dunsdon, R, Hawkins, J, Hubbard, J, Hussain, I, Maile, G, Matico, R, Mosley, J, Naylor, A, O'Brien, A, Redshaw, S, Rowland, P, Soleil, V, Smith, K.J, Sweitzer, S, Theobald, P, Vesey, D, Walter, D.S, Wayne, G.
Deposit date:2009-04-02
Release date:2009-05-19
Last modified:2019-05-15
Method:X-RAY DIFFRACTION (2.08 Å)
Cite:Second Generation of Bace-1 Inhibitors Part 2: Optimisation of the Non-Prime Side Substituent.
Bioorg.Med.Chem.Lett., 19, 2009
8APX
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BU of 8apx by Molmil
CryoEM structure of the Chikungunya virus nsP1 capping pores in covalent complex with a 7GMP cap structure
Descriptor: Polyprotein P1234, S-ADENOSYL-L-HOMOCYSTEINE, ZINC ION
Authors:Jones, R, Hons, M, Reguera, J.
Deposit date:2022-08-10
Release date:2023-05-03
Method:ELECTRON MICROSCOPY (3.2 Å)
Cite:Structural basis and dynamics of Chikungunya alphavirus RNA capping by nsP1 capping pores.
Proc.Natl.Acad.Sci.USA, 120, 2023
2PKV
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BU of 2pkv by Molmil
D-(GGTATACC) ambient pressure
Descriptor: 5'-D(*GP*GP*TP*AP*TP*AP*CP*C)-3'
Authors:Girard, E, Prange, T, Kahn, R, Fourme, R.
Deposit date:2007-04-18
Release date:2007-07-24
Last modified:2023-08-30
Method:X-RAY DIFFRACTION (1.6 Å)
Cite:Adaptation of the base-paired double-helix molecular architecture to extreme pressure.
Nucleic Acids Res., 35, 2007
8AOV
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BU of 8aov by Molmil
CryoEM structure of the Chikungunya virus nsP1 capping pores in complex with GTP
Descriptor: GUANOSINE-5'-TRIPHOSPHATE, ZINC ION, mRNA-capping enzyme nsP1
Authors:Jones, R, Hons, M, Reguera, J.
Deposit date:2022-08-08
Release date:2023-05-31
Last modified:2024-07-24
Method:ELECTRON MICROSCOPY (2.48 Å)
Cite:Structural basis and dynamics of Chikungunya alphavirus RNA capping by nsP1 capping pores.
Proc.Natl.Acad.Sci.USA, 120, 2023
6YVZ
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BU of 6yvz by Molmil
HIF prolyl hydroxylase 2 (PHD2/ EGLN1) in complex with bicyclic JLS-367
Descriptor: 4-[(5-bromanylisoquinolin-3-yl)amino]-4-oxidanylidene-butanoic acid, BICARBONATE ION, Egl nine homolog 1, ...
Authors:Chowdhury, R, Sorensen, J.L, Schofield, C.J.
Deposit date:2020-04-29
Release date:2020-12-30
Last modified:2024-01-24
Method:X-RAY DIFFRACTION (1.91 Å)
Cite:Use of cyclic peptides to induce crystallization: case study with prolyl hydroxylase domain 2.
Sci Rep, 10, 2020
8APU
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BU of 8apu by Molmil
Crystal Structure of H. influenzae TrmD in complex with Compound 14
Descriptor: 6-[[4-(aminomethyl)phenyl]methylamino]pyridine-3-carboxamide, CITRIC ACID, tRNA (guanine-N(1)-)-methyltransferase
Authors:Hall, G, Cowan, R, Carr, M.D.
Deposit date:2022-08-10
Release date:2023-06-14
Last modified:2024-02-07
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Evaluating the druggability of TrmD, a potential antibacterial target, through design and microbiological profiling of a series of potent TrmD inhibitors.
Bioorg.Med.Chem.Lett., 90, 2023
2W23
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BU of 2w23 by Molmil
Structure of mutant W169Y of Pleurotus eryngii versatile peroxidase (VP)
Descriptor: CALCIUM ION, GLYCEROL, PROTOPORPHYRIN IX CONTAINING FE, ...
Authors:Ruiz-Duenas, F.J, Pogni, R, Morales, M, Giansanti, S, Mate, M.J, Romero, A, Martinez, M.J, Basosi, R, Martinez, A.T.
Deposit date:2008-10-23
Release date:2009-01-20
Last modified:2023-12-13
Method:X-RAY DIFFRACTION (1.94 Å)
Cite:Protein Radicals in Fungal Versatile Peroxidase: Catalytic Tryptophan Radical in Both Compound I and Compound II and Studies on W164Y, W164H, and W164S Variants.
J.Biol.Chem., 284, 2009
8APT
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BU of 8apt by Molmil
Crystal Structure of H. influenzae TrmD in complex with Compound 13
Descriptor: 6-[[3-(aminomethyl)phenyl]methylamino]pyridine-3-carboxamide, CITRIC ACID, tRNA (guanine-N(1)-)-methyltransferase
Authors:Hall, G, Cowan, R, Carr, M.D.
Deposit date:2022-08-10
Release date:2023-06-14
Last modified:2024-02-07
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Evaluating the druggability of TrmD, a potential antibacterial target, through design and microbiological profiling of a series of potent TrmD inhibitors.
Bioorg.Med.Chem.Lett., 90, 2023
8APV
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BU of 8apv by Molmil
Crystal Structure of H. influenzae TrmD in complex with Compound 27
Descriptor: 1-[[4-(aminomethyl)phenyl]methyl]pyrrolo[2,3-b]pyridine-5-carboxamide, CITRIC ACID, tRNA (guanine-N(1)-)-methyltransferase
Authors:Hall, G, Cowan, R, Carr, M.D.
Deposit date:2022-08-10
Release date:2023-06-14
Last modified:2024-02-07
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:Evaluating the druggability of TrmD, a potential antibacterial target, through design and microbiological profiling of a series of potent TrmD inhibitors.
Bioorg.Med.Chem.Lett., 90, 2023
8APW
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BU of 8apw by Molmil
Crystal Structure of H. influenzae TrmD in complex with Compound 30
Descriptor: 1-[2-oxidanylidene-2-(piperidin-4-ylamino)ethyl]pyrrolo[2,3-b]pyridine-5-carboxamide, CITRIC ACID, tRNA (guanine-N(1)-)-methyltransferase
Authors:Hall, G, Cowan, R, Carr, M.D.
Deposit date:2022-08-10
Release date:2023-06-14
Last modified:2024-02-07
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Evaluating the druggability of TrmD, a potential antibacterial target, through design and microbiological profiling of a series of potent TrmD inhibitors.
Bioorg.Med.Chem.Lett., 90, 2023
8AIN
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BU of 8ain by Molmil
MCUGI SAUNG complex
Descriptor: 1,2-ETHANEDIOL, MCUGI, SULFATE ION, ...
Authors:Muselmani, W, Savva, R.
Deposit date:2022-07-26
Release date:2023-06-21
Last modified:2024-02-07
Method:X-RAY DIFFRACTION (2.7 Å)
Cite:A Multimodal Approach towards Genomic Identification of Protein Inhibitors of Uracil-DNA Glycosylase.
Viruses, 15, 2023
8AIM
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BU of 8aim by Molmil
Ugi-2 SAUNG complex
Descriptor: Uracil-DNA glycosylase, Uracil-DNA glycosylase inhibitor
Authors:Muselmani, W, Savva, R.
Deposit date:2022-07-26
Release date:2023-06-21
Last modified:2024-02-07
Method:X-RAY DIFFRACTION (2.6 Å)
Cite:A Multimodal Approach towards Genomic Identification of Protein Inhibitors of Uracil-DNA Glycosylase.
Viruses, 15, 2023
8AIL
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BU of 8ail by Molmil
Bacillus phage VMY22 p56 in complex with Bacillus weidmannii Ung
Descriptor: Bacillus phage VMY22 p56, GLYCEROL, IODIDE ION, ...
Authors:Muselmani, W, Bagneris, C, Savva, R.
Deposit date:2022-07-26
Release date:2023-06-21
Last modified:2024-02-07
Method:X-RAY DIFFRACTION (2.45 Å)
Cite:A Multimodal Approach towards Genomic Identification of Protein Inhibitors of Uracil-DNA Glycosylase.
Viruses, 15, 2023
3JXJ
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BU of 3jxj by Molmil
Crystal structure of the chicken TRPV4 ankyrin repeat domain
Descriptor: PHOSPHATE ION, Vanilloid receptor-related osmotically activated channel protein
Authors:Phelps, C.B, Choo, S.S, Gaudet, R.
Deposit date:2009-09-19
Release date:2009-12-22
Last modified:2024-03-20
Method:X-RAY DIFFRACTION (2.8 Å)
Cite:Mutations in TRPV4 cause Charcot-Marie-Tooth disease type 2C.
Nat.Genet., 42, 2010
6YW0
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BU of 6yw0 by Molmil
Lysine-N,N-Dimethylated HIF prolyl hydroxylase 2 (PHD2/ EGLN1) in complex with BB-287
Descriptor: 4-(isoquinolin-3-ylamino)-4-oxobutanoic acid, BICARBONATE ION, Egl nine homolog 1, ...
Authors:Chowdhury, R, Schofield, C.J.
Deposit date:2020-04-29
Release date:2020-12-30
Last modified:2024-01-24
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Use of cyclic peptides to induce crystallization: case study with prolyl hydroxylase domain 2.
Sci Rep, 10, 2020
2VEV
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BU of 2vev by Molmil
CRYSTAL STRUCTURE OF PROTEIN TYROSINE PHOSPHATASE 1B IN COMPLEX WITH AN ISOTHIAZOLIDINONE-CONTAINING INHIBITOR
Descriptor: MAGNESIUM ION, N-[(1S)-1-(4-benzyl-1H-imidazol-2-yl)-2-{4-[(5S)-1,1-dioxido-3-oxoisothiazolidin-5-yl]phenyl}ethyl]-3-(trifluoromethyl)benzenesulfonamide, TYROSINE-PROTEIN PHOSPHATASE NON-RECEPTOR TYPE 1
Authors:Douty, B, Wayland, B, Ala, P.J, Bower, M.J, Pruitt, J, Bostrom, L, Wei, M, Klabe, R, Gonneville, L, Wynn, R, Burn, T.C, Liu, P.C.C, Combs, A.P, Yue, E.W.
Deposit date:2007-10-27
Release date:2007-11-06
Last modified:2024-05-08
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Isothiazolidinone Inhibitors of Ptp1B Containing Imidazoles and Imidazolines
Bioorg.Med.Chem.Lett., 18, 2008

223790

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