Loading
PDBj
MenuPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help
PDB: 27191 results

2FMN
DownloadVisualize
BU of 2fmn by Molmil
Ala177Val mutant of E. coli Methylenetetrahydrofolate Reductase complex with LY309887
Descriptor: 5,10-methylenetetrahydrofolate reductase, FLAVIN-ADENINE DINUCLEOTIDE, N-[(5-{2-[(6R)-2-AMINO-4-OXO-3,4,5,6,7,8-HEXAHYDROPYRIDO[2,3-D]PYRIMIDIN-6-YL]ETHYL}-2-THIENYL)CARBONYL]-L-GLUTAMIC ACID
Authors:Pejchal, R, Campbell, E, Guenther, B.D, Lennon, B.W, Matthews, R.G, Ludwig, M.L.
Deposit date:2006-01-09
Release date:2006-04-25
Last modified:2023-08-30
Method:X-RAY DIFFRACTION (2.05 Å)
Cite:Structural Perturbations in the Ala -> Val Polymorphism of Methylenetetrahydrofolate Reductase: How Binding of Folates May Protect against Inactivation
Biochemistry, 45, 2006
4UWD
DownloadVisualize
BU of 4uwd by Molmil
HIF prolyl hydroxylase 2 (PHD2/ EGLN1) D315E VARIANT in complex with Mn(II) and N-[(1-chloro-4-hydroxyisoquinolin-3-yl)carbonyl]glycine (IOX3/UN9)
Descriptor: EGL NINE HOMOLOG 1, MANGANESE (II) ION, N-[(1-CHLORO-4-HYDROXYISOQUINOLIN-3-YL)CARBONYL]GLYCINE
Authors:Chowdhury, R, Tarhonskaya, H, Schofield, C.J.
Deposit date:2014-08-11
Release date:2014-08-27
Last modified:2024-01-10
Method:X-RAY DIFFRACTION (1.721 Å)
Cite:Investigating the Contribution of the Active Site Environment to the Slow Reaction of Hypoxia-Inducible Factor Prolyl Hydroxylase Domain 2 with Oxygen.
Biochem.J., 463, 2014
2FPN
DownloadVisualize
BU of 2fpn by Molmil
The crystal structure of the ywmB protein from Bacillus subtilis
Descriptor: ywmB
Authors:Zhang, R, Wu, R, Moy, S, Joachimiak, A, Midwest Center for Structural Genomics (MCSG)
Deposit date:2006-01-16
Release date:2006-03-14
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.49 Å)
Cite:The crystal structure of the ywmB protein from Bacillus subtilis
To be Published
9JDW
DownloadVisualize
BU of 9jdw by Molmil
CRYSTAL STRUCTURE OF HUMAN L-ARGININE:GLYCINE AMIDINOTRANSFERASE IN COMPLEX WITH ALPHA-AMINO BUTYRIC ACID
Descriptor: ALPHA-AMINOBUTYRIC ACID, PROTEIN (L-ARGININE:GLYCINE AMIDINOTRANSFERASE)
Authors:Fritsche, E, Humm, A, Huber, R.
Deposit date:1998-10-12
Release date:1999-02-09
Last modified:2023-11-15
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:The ligand-induced structural changes of human L-Arginine:Glycine amidinotransferase. A mutational and crystallographic study.
J.Biol.Chem., 274, 1999
2FMO
DownloadVisualize
BU of 2fmo by Molmil
Ala177Val mutant of E. coli Methylenetetrahydrofolate Reductase
Descriptor: (4S)-2-METHYL-2,4-PENTANEDIOL, 5,10-methylenetetrahydrofolate reductase, FLAVIN-ADENINE DINUCLEOTIDE, ...
Authors:Pejchal, R, Campbell, E, Guenther, B.D, Lennon, B.W, Matthews, R.G, Ludwig, M.L.
Deposit date:2006-01-09
Release date:2006-04-25
Last modified:2023-08-30
Method:X-RAY DIFFRACTION (2.25 Å)
Cite:Structural Perturbations in the Ala -> Val Polymorphism of Methylenetetrahydrofolate Reductase: How Binding of Folates May Protect against Inactivation
Biochemistry, 45, 2006
2FQ4
DownloadVisualize
BU of 2fq4 by Molmil
The crystal structure of the transcriptional regulator (TetR family) from Bacillus cereus
Descriptor: Transcriptional regulator, TetR family
Authors:Zhang, R, Wu, R, Moy, S, Cymborowski, M, Minor, W, Joachimiak, A, Midwest Center for Structural Genomics (MCSG)
Deposit date:2006-01-17
Release date:2006-02-28
Last modified:2022-04-13
Method:X-RAY DIFFRACTION (1.79 Å)
Cite:The crystal structure of the transcriptional regulator (TetR family) from Bacillus cereus
To be Published
2FQ3
DownloadVisualize
BU of 2fq3 by Molmil
Structure and function of the SWIRM domain, a conserved protein module found in chromatin regulatory complexes
Descriptor: Transcription regulatory protein SWI3
Authors:Da, G, Lenkart, J, Zhao, K, Shiekhattar, R, Cairns, B.R, Marmorstein, R.
Deposit date:2006-01-17
Release date:2006-02-07
Last modified:2024-02-14
Method:X-RAY DIFFRACTION (1.4 Å)
Cite:Structure and function of the SWIRM domain, a conserved protein module found in chromatin regulatory complexes
Proc.Natl.Acad.Sci.Usa, 103, 2006
4V6I
DownloadVisualize
BU of 4v6i by Molmil
Localization of the small subunit ribosomal proteins into a 6.1 A cryo-EM map of Saccharomyces cerevisiae translating 80S ribosome
Descriptor: 18S rRNA, 25S rRNA, 40S ribosomal protein RACK1 (RACK1), ...
Authors:Armache, J.-P, Jarasch, A, Anger, A.M, Villa, E, Becker, T, Bhushan, S, Jossinet, F, Habeck, M, Dindar, G, Franckenberg, S, Marquez, V, Mielke, T, Thomm, M, Berninghausen, O, Beatrix, B, Soeding, J, Westhof, E, Wilson, D.N, Beckmann, R.
Deposit date:2010-10-12
Release date:2014-07-09
Last modified:2024-02-28
Method:ELECTRON MICROSCOPY (8.8 Å)
Cite:Cryo-EM structure and rRNA model of a translating eukaryotic 80S ribosome at 5.5-A resolution.
Proc.Natl.Acad.Sci.USA, 107, 2010
4UY9
DownloadVisualize
BU of 4uy9 by Molmil
Structure of MLK1 kinase domain with leucine zipper 1
Descriptor: MITOGEN-ACTIVATED PROTEIN KINASE KINASE KINASE 9
Authors:Read, J.A, Brassington, C, Pollard, H.K, Phillips, C, Green, I, Overmann, R, Collier, M.
Deposit date:2014-08-29
Release date:2015-09-30
Last modified:2024-01-10
Method:X-RAY DIFFRACTION (2.81 Å)
Cite:Recurrent Mlk4 Loss-of-Function Mutations Suppress Jnk Signaling to Promote Colon Tumorigenesis.
Cancer Res., 76, 2016
3H3Q
DownloadVisualize
BU of 3h3q by Molmil
Crystal structure of the CERT START domain in complex with HPA-13
Descriptor: Goodpasture antigen binding protein, N-[(1R,3R)-3-hydroxy-1-(hydroxymethyl)-3-phenylpropyl]tridecanamide
Authors:Kudo, N, Wakatsuki, S, Kato, R.
Deposit date:2009-04-17
Release date:2010-03-02
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (2 Å)
Cite:Crystal structures of the CERT START domain with inhibitors provide insights into the mechanism of ceramide transfer.
J.Mol.Biol., 396, 2010
5VE4
DownloadVisualize
BU of 5ve4 by Molmil
Crystal structure of persulfide dioxygenase-rhodanese fusion protein with rhodanese domain inactivating mutation (C314S) from Burkholderia phytofirmans
Descriptor: BpPRF, CHLORIDE ION, DI(HYDROXYETHYL)ETHER, ...
Authors:Motl, N, Skiba, M.A, Smith, J.L, Banerjee, R.
Deposit date:2017-04-03
Release date:2017-07-19
Last modified:2023-10-04
Method:X-RAY DIFFRACTION (2.65 Å)
Cite:Structural and biochemical analyses indicate that a bacterial persulfide dioxygenase-rhodanese fusion protein functions in sulfur assimilation.
J. Biol. Chem., 292, 2017
5VET
DownloadVisualize
BU of 5vet by Molmil
PHOSPHOLIPASE A2, RE-REFINEMENT OF THE PDB STRUCTURE 1JQ8 WITHOUT THE PUTATIVE COMPLEXED OLIGOPEPTIDE
Descriptor: Phospholipase A2 VRV-PL-VIIIa
Authors:Wlodawer, A, Dauter, Z, Minor, W, Stanfield, R, Porebski, P, Jaskolski, M, Pozharski, E, Weichenberger, C.X, Rupp, B.
Deposit date:2017-04-05
Release date:2018-06-20
Last modified:2022-04-13
Method:X-RAY DIFFRACTION (2 Å)
Cite:Detect, correct, retract: How to manage incorrect structural models.
FEBS J., 285, 2018
5VIS
DownloadVisualize
BU of 5vis by Molmil
1.73 Angstrom Resolution Crystal Structure of Dihydropteroate Synthase (folP-SMZ_B27) from Soil Uncultured Bacterium.
Descriptor: CHLORIDE ION, D(-)-TARTARIC ACID, Dihydropteroate Synthase, ...
Authors:Minasov, G, Wawrzak, Z, Di Leo, R, Skarina, T, Savchenko, A, Anderson, W.F, Center for Structural Genomics of Infectious Diseases (CSGID)
Deposit date:2017-04-17
Release date:2017-05-03
Last modified:2023-10-04
Method:X-RAY DIFFRACTION (1.73 Å)
Cite:1.73 Angstrom Resolution Crystal Structure of Dihydropteroate Synthase (folP-SMZ_B27) from Soil Uncultured Bacterium.
To Be Published
6Q3S
DownloadVisualize
BU of 6q3s by Molmil
Engineered Human HLA_A2 MHC Class I molecule in complex with TCR and SV9 peptide
Descriptor: ACETATE ION, Beta-2-microglobulin, GLYCEROL, ...
Authors:Meijers, R, Anjanappa, R, Springer, S, Garcia-Alai, M.
Deposit date:2018-12-04
Release date:2019-07-24
Last modified:2021-02-03
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:High-throughput peptide-MHC complex generation and kinetic screenings of TCRs with peptide-receptive HLA-A*02:01 molecules.
Sci Immunol, 4, 2019
5VE5
DownloadVisualize
BU of 5ve5 by Molmil
Crystal structure of persulfide dioxygenase rhodanese fusion protein with rhodanese domain inactivating mutation (C314S) from Burkholderia phytofirmans in complex with glutathione
Descriptor: BpPRF, CHLORIDE ION, FE (III) ION, ...
Authors:Motl, N, Skiba, M.A, Smith, J.L, Banerjee, R.
Deposit date:2017-04-03
Release date:2017-07-19
Last modified:2023-10-04
Method:X-RAY DIFFRACTION (2.35 Å)
Cite:Structural and biochemical analyses indicate that a bacterial persulfide dioxygenase-rhodanese fusion protein functions in sulfur assimilation.
J. Biol. Chem., 292, 2017
3GVK
DownloadVisualize
BU of 3gvk by Molmil
Crystal structure of endo-neuraminidase NF mutant
Descriptor: Endo-N-acetylneuraminidase, N-acetyl-alpha-neuraminic acid-(2-8)-N-acetyl-alpha-neuraminic acid-(2-8)-N-acetyl-beta-neuraminic acid, N-acetyl-alpha-neuraminic acid-(2-8)-N-acetyl-beta-neuraminic acid, ...
Authors:Schulz, E.C, Dickmanns, A, Ficner, R.
Deposit date:2009-03-31
Release date:2010-03-02
Last modified:2021-10-13
Method:X-RAY DIFFRACTION (1.84 Å)
Cite:Structural basis for the recognition and cleavage of polysialic acid by the bacteriophage K1F tailspike protein EndoNF.
J.Mol.Biol., 397, 2010
3H3R
DownloadVisualize
BU of 3h3r by Molmil
Crystal structure of the CERT START domain in complex with HPA-14
Descriptor: Goodpasture antigen binding protein, N-[(1R,3R)-3-hydroxy-1-(hydroxymethyl)-3-phenylpropyl]tetradecanamide
Authors:Kudo, N, Wakatsuki, S, Kato, R.
Deposit date:2009-04-17
Release date:2010-03-02
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (1.85 Å)
Cite:Crystal structures of the CERT START domain with inhibitors provide insights into the mechanism of ceramide transfer.
J.Mol.Biol., 396, 2010
5VTG
DownloadVisualize
BU of 5vtg by Molmil
The structure of TamB963-1138 from Escherichia coli reveals a novel hydrophobic Beta-taco fold
Descriptor: Translocation and assembly module subunit TamB
Authors:Grinter, R, Josts, I.
Deposit date:2017-05-17
Release date:2017-11-22
Last modified:2024-03-13
Method:X-RAY DIFFRACTION (1.859 Å)
Cite:The Structure of a Conserved Domain of TamB Reveals a Hydrophobic beta Taco Fold.
Structure, 25, 2017
5VYJ
DownloadVisualize
BU of 5vyj by Molmil
Crystal structure of the photosynthetic phosphoenolpyruvate carboxylase isoenzyme from maize in complex with Gly
Descriptor: ACETATE ION, GLYCINE, Phosphoenolpyruvate carboxylase
Authors:Gonzalez-Segura, L, Guemez-Toro, R, Munoz-Clares, R.A.
Deposit date:2017-05-25
Release date:2017-06-28
Last modified:2023-10-04
Method:X-RAY DIFFRACTION (3.3 Å)
Cite:Identification of the allosteric site for neutral amino acids in the maize C4isozyme of phosphoenolpyruvate carboxylase: The critical role of Ser-100.
J. Biol. Chem., 293, 2018
5VEP
DownloadVisualize
BU of 5vep by Molmil
MOUSE KYNURENINE AMINOTRANSFERASE III, RE-REFINEMENT OF THE PDB STRUCTURE 3E2F
Descriptor: 4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID, CALCIUM ION, DI(HYDROXYETHYL)ETHER, ...
Authors:Wlodawer, A, Dauter, Z, Minor, W, Stanfield, R, Porebski, P, Jaskolski, M, Pozharski, E, Weichenberger, C.X, Rupp, B.
Deposit date:2017-04-05
Release date:2017-11-29
Last modified:2022-04-13
Method:X-RAY DIFFRACTION (2.59 Å)
Cite:Detect, correct, retract: How to manage incorrect structural models.
FEBS J., 285, 2018
5VIP
DownloadVisualize
BU of 5vip by Molmil
Crystal structure of Pseudomonas malonate decarboxylase MdcD-MdcE hetero-dimer
Descriptor: MdcD, MdcE
Authors:Maderbocus, R, Tong, L.
Deposit date:2017-04-17
Release date:2017-08-16
Method:X-RAY DIFFRACTION (1.857 Å)
Cite:Crystal structure of a Pseudomonas malonate decarboxylase holoenzyme hetero-tetramer.
Nat Commun, 8, 2017
5VF5
DownloadVisualize
BU of 5vf5 by Molmil
Crystal structure of the vicilin from Solanum melongena, re-refinement
Descriptor: ACETATE ION, COPPER (II) ION, DI(HYDROXYETHYL)ETHER, ...
Authors:Porebski, P.J, Wlodawer, A, Dauter, Z, Minor, W, Stanfield, R, Jaskolski, M, Pozharski, E, Weichenberger, C.X, Rupp, B.
Deposit date:2017-04-06
Release date:2017-12-06
Last modified:2023-10-04
Method:X-RAY DIFFRACTION (1.49 Å)
Cite:Detect, correct, retract: How to manage incorrect structural models.
FEBS J., 285, 2018
5VIT
DownloadVisualize
BU of 5vit by Molmil
Crystal structure of a Pseudomonas malonate decarboxylase hetero-tetramer in complex with malonate
Descriptor: MALONATE ION, MdcA, MdcC, ...
Authors:Maderbocus, R, Tong, L.
Deposit date:2017-04-17
Release date:2017-08-16
Last modified:2024-03-13
Method:X-RAY DIFFRACTION (2.203 Å)
Cite:Crystal structure of a Pseudomonas malonate decarboxylase holoenzyme hetero-tetramer.
Nat Commun, 8, 2017
5VE3
DownloadVisualize
BU of 5ve3 by Molmil
Crystal structure of wild-type persulfide dioxygenase-rhodanese fusion protein from Burkholderia phytofirmans
Descriptor: BpPRF, FE (III) ION
Authors:Motl, N, Skiba, M.A, Smith, J.L, Banerjee, R.
Deposit date:2017-04-03
Release date:2017-07-19
Last modified:2023-11-15
Method:X-RAY DIFFRACTION (1.793 Å)
Cite:Structural and biochemical analyses indicate that a bacterial persulfide dioxygenase-rhodanese fusion protein functions in sulfur assimilation.
J. Biol. Chem., 292, 2017
5VSV
DownloadVisualize
BU of 5vsv by Molmil
Crystal Structure of Inosine 5'-monophosphate Dehydrogenase from Clostridium perfringens Complexed with IMP and P225
Descriptor: INOSINIC ACID, Inosine-5'-monophosphate dehydrogenase, {2-chloro-5-[({2-[3-(prop-1-en-2-yl)phenyl]propan-2-yl}carbamoyl)amino]phenoxy}acetic acid
Authors:Maltseva, N, Kim, Y, Mulligan, R, Makowska-Grzyska, M, Gu, M, Gollapalli, D.R, Hedstrom, L, Joachimiak, A, Anderson, W.F, Center for Structural Genomics of Infectious Diseases (CSGID)
Deposit date:2017-05-12
Release date:2017-05-24
Last modified:2023-10-04
Method:X-RAY DIFFRACTION (2.205 Å)
Cite:Crystal Structure of Inosine 5'-monophosphate Dehydrogenase from Clostridium perfringens Complexed with IMP and P225
To Be Published

222415

PDB entries from 2024-07-10

PDB statisticsPDBj update infoContact PDBjnumon