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PDB: 535 results

5LLB
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BU of 5llb by Molmil
Structure of Polyphosphate Kinase 2 from Francisella tularensis with AMPPCH2PPP and polyphosphate
Descriptor: CHLORIDE ION, MAGNESIUM ION, Polyphosphate kinase 2, ...
Authors:Roach, P.L, Parnell, A.E.
Deposit date:2016-07-27
Release date:2017-10-11
Last modified:2024-01-10
Method:X-RAY DIFFRACTION (1.92 Å)
Cite:Substrate recognition and mechanism revealed by ligand-bound polyphosphate kinase 2 structures.
Proc. Natl. Acad. Sci. U.S.A., 115, 2018
3AME
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BU of 3ame by Molmil
TYPE III ANTIFREEZE PROTEIN ISOFORM HPLC 12 Q9TQ44T
Descriptor: PROTEIN (ANTIFREEZE PROTEIN TYPE III)
Authors:Graether, S.P, Deluca, C.I, Baardsnes, J, Hill, G.A, Davies, P.L, Jia, Z.
Deposit date:1999-01-24
Release date:1999-04-29
Last modified:2023-08-30
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Quantitative and qualitative analysis of type III antifreeze protein structure and function.
J.Biol.Chem., 274, 1999
1GY9
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BU of 1gy9 by Molmil
Taurine/alpha-ketoglutarate Dioxygenase from Escherichia coli
Descriptor: 2-AMINOETHANESULFONIC ACID, 2-OXOGLUTARIC ACID, ALPHA-KETOGLUTARATE-DEPENDENT TAURINE DIOXYGENASE, ...
Authors:Elkins, J.M, Burzlaff, N.I, Ryle, M.J, Lloyd, J.S, Clifton, I.J, Baldwin, J.E, Hausinger, R.P, Roach, P.L.
Deposit date:2002-04-22
Release date:2002-04-26
Last modified:2023-12-13
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:X-Ray Crystal Structure of Escherichia Coli Taurine/Alpha-Ketoglutarate Dioxygenase Complexed to Ferrous Iron and Substrates.
Biochemistry, 41, 2002
1HB2
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BU of 1hb2 by Molmil
ISOPENICILLIN N SYNTHASE FROM ASPERGILLUS NIDULANS (OXYGEN EXPOSED PRODUCT FROM ANAEROBIC ACOV FE COMPLEX)
Descriptor: FE (II) ION, ISOPENICILLIN N SYNTHASE, N6-[(1S)-2-{[(1R)-1-CARBOXY-2-METHYLPROPYL]OXY}-1-(MERCAPTOCARBONYL)-2-OXOETHYL]-6-OXO-L-LYSINE, ...
Authors:Ogle, J.M, Clifton, I.J, Rutledge, P.J, Elkins, J.M, Burzlaff, N.I, Adlington, R.M, Roach, P.L, Baldwin, J.E.
Deposit date:2001-04-11
Release date:2001-11-23
Last modified:2024-05-08
Method:X-RAY DIFFRACTION (1.3 Å)
Cite:Alternative Oxidation by Isopenicillin N Synthase Observed by X-Ray Diffraction.
Chem.Biol., 8, 2001
8FZU
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BU of 8fzu by Molmil
The von Willebrand factor A domain of human capillary morphogenesis gene II, flexibly fused to the 1TEL crystallization chaperone, Thr-Val linker variant, Expressed with SUMO tag
Descriptor: POTASSIUM ION, SULFATE ION, Transcription factor ETV6,Anthrax toxin receptor 2
Authors:Gajjar, P.L, Litchfield, C.M, Callahan, M, Redd, N, Doukov, T, Lebedev, A, Moody, J.D.
Deposit date:2023-01-30
Release date:2023-07-19
Last modified:2023-10-18
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Increasing the bulk of the 1TEL-target linker and retaining the 10×His tag in a 1TEL-CMG2-vWa construct improves crystal order and diffraction limits.
Acta Crystallogr D Struct Biol, 79, 2023
1HY0
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BU of 1hy0 by Molmil
CRYSTAL STRUCTURE OF WILD TYPE DUCK DELTA 1 CRYSTALLIN (EYE LENS PROTEIN)
Descriptor: DELTA CRYSTALLIN I, SULFATE ION
Authors:Sampaleanu, L.M, Vallee, F, Slingsby, C, Howell, P.L.
Deposit date:2001-01-17
Release date:2001-04-21
Last modified:2024-02-07
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Structural studies of duck delta 1 and delta 2 crystallin suggest conformational changes occur during catalysis.
Biochemistry, 40, 2001
7RZY
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BU of 7rzy by Molmil
CryoEM structure of Vibrio cholerae transposon Tn6677 AAA+ ATPase TnsC
Descriptor: ADENOSINE-5'-TRIPHOSPHATE, Tn6677 Vibrio cholerae transposon TnsC (VchTnsC)
Authors:Hoffmann, F.T, Kim, M, Beh, L.Y, Wang, J, Vo, P.L.H, Gelsinger, D.R, Acree, C, Mohabir, J.T, Fernandez, I.S, Sternberg, S.H.
Deposit date:2021-08-28
Release date:2022-06-08
Last modified:2024-06-05
Method:ELECTRON MICROSCOPY (3.5 Å)
Cite:Selective TnsC recruitment enhances the fidelity of RNA-guided transposition.
Nature, 609, 2022
8PE8
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BU of 8pe8 by Molmil
Symmetry expanded D7 local refined map of mitochondrial heat-shock protein 60-like protein from Chaetomium thermophilum
Descriptor: Mitochondrial heat shock protein 60-like protein
Authors:Semchonok, D.A, Kyrilis, F.L, Hamdi, F, Kastritis, P.L.
Deposit date:2023-06-13
Release date:2023-08-16
Method:ELECTRON MICROSCOPY (3.46 Å)
Cite:Symmetry expanded D7, locally refined cryo-EM map of mitochondrial heat shock protein 60-like protein Chaetomium thermophilum.
To Be Published
7SA8
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BU of 7sa8 by Molmil
Crystal Structure of the periplasmic lyase AlgL K66A Mutant
Descriptor: Alginate lyase
Authors:Gheorghita, A.A, Pfoh, R, Wong, S.S.Y, Howell, P.L.
Deposit date:2021-09-22
Release date:2022-08-03
Last modified:2023-10-18
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:The Pseudomonas aeruginosa homeostasis enzyme AlgL clears the periplasmic space of accumulated alginate during polymer biosynthesis.
J.Biol.Chem., 298, 2022
8PE4
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BU of 8pe4 by Molmil
Capsid structure of the L-A helper virus from native viral communities
Descriptor: Major capsid protein
Authors:Schmidt, L, Tueting, C, Stubbs, M.T, Kastritis, P.L.
Deposit date:2023-06-13
Release date:2024-05-22
Method:ELECTRON MICROSCOPY (3.21 Å)
Cite:Delineating organizational principles of the endogenous L-A virus by cryo-EM and computational analysis of native cell extracts.
Commun Biol, 7, 2024
8GIH
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BU of 8gih by Molmil
Structure of Hepatitis B Virus Capsid Y132A mutant in complex with Compound 24
Descriptor: (6S,8R)-N-(3-bromo-4-fluorophenyl)-8-fluoro-10-methyl-11-oxo-1,3,4,7,8,9,10,11-octahydro-2H-pyrido[4',3':3,4]pyrazolo[1,5-a][1,4]diazepine-2-carboxamide, CHLORIDE ION, Capsid protein
Authors:Shaffer, P.L.
Deposit date:2023-03-14
Release date:2023-04-12
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (2.65 Å)
Cite:Diazepinone HBV capsid assembly modulators.
Bioorg Med Chem Lett, 72, 2022
7T8N
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BU of 7t8n by Molmil
Crystal structure of the PNAG binding module PgaA-TPR 220-359
Descriptor: CHLORIDE ION, MAGNESIUM ION, Poly-beta-1,6-N-acetyl-D-glucosamine export protein
Authors:Pfoh, R, Little, D.J, Howell, P.L.
Deposit date:2021-12-16
Release date:2022-08-03
Last modified:2024-02-28
Method:X-RAY DIFFRACTION (2.85 Å)
Cite:The TPR domain of PgaA is a multifunctional scaffold that binds PNAG and modulates PgaB-dependent polymer processing.
Plos Pathog., 18, 2022
7EZV
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BU of 7ezv by Molmil
local CryoEM structure of the SARS-CoV-2 S6PV2 in complex with BD-812 Fab and BD-836 Fab
Descriptor: 812 H, 812L, 836H, ...
Authors:Liu, P.L.
Deposit date:2021-06-02
Release date:2021-09-08
Last modified:2022-02-16
Method:ELECTRON MICROSCOPY (3.3 Å)
Cite:Structures of SARS-CoV-2 B.1.351 neutralizing antibodies provide insights into cocktail design against concerning variants.
Cell Res., 31, 2021
7EY4
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BU of 7ey4 by Molmil
Local CryoEM of the SARS-CoV-2 S6PV2 in complex with BD-667
Descriptor: BD-667 H, BD-667 L, Spike glycoprotein, ...
Authors:Liu, P.L.
Deposit date:2021-05-29
Release date:2021-09-08
Last modified:2022-02-16
Method:ELECTRON MICROSCOPY (3.69 Å)
Cite:Structures of SARS-CoV-2 B.1.351 neutralizing antibodies provide insights into cocktail design against concerning variants.
Cell Res., 31, 2021
8OIU
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BU of 8oiu by Molmil
Cryo-EM reconstruction of the native 24-mer E2o core of the 2-oxoglutarate dehydrogenase complex of C. thermophilum at 3.35 A resolution
Descriptor: Dihydrolipoyllysine-residue succinyltransferase
Authors:Skalidis, I, Tueting, C, Kyrilis, F.L, Hamdi, F, Kastritis, P.L.
Deposit date:2023-03-23
Release date:2023-05-31
Last modified:2024-07-24
Method:ELECTRON MICROSCOPY (3.35 Å)
Cite:Structural analysis of an endogenous 4-megadalton succinyl-CoA-generating metabolon.
Commun Biol, 6, 2023
8GQP
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BU of 8gqp by Molmil
Complex of D-protein binder D-19437 and L-target L-Pep-1
Descriptor: D-binder, L-pep1
Authors:Liang, M.F, Li, S.C, Wang, T.Y, Liu, L, Lu, P.L.
Deposit date:2022-08-30
Release date:2023-09-13
Last modified:2024-09-25
Method:X-RAY DIFFRACTION (2 Å)
Cite:Accurate de novo design of heterochiral protein-protein interactions
Cell Res., 2024
7COW
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BU of 7cow by Molmil
353 bp di-nucleosome harboring cohesive DNA termini with linker histone H1.0
Descriptor: CALCIUM ION, CHLORIDE ION, DNA (353-MER), ...
Authors:Adhireksan, Z, Sharma, D, Lee, P.L, Davey, C.A.
Deposit date:2020-08-05
Release date:2021-08-11
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (2.86 Å)
Cite:Engineering nucleosomes for generating diverse chromatin assemblies.
Nucleic Acids Res., 49, 2021
5T10
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BU of 5t10 by Molmil
PelC dodecamer from Paraburkholderia phytofirmans, space group P6
Descriptor: Uncharacterized protein
Authors:Marmont, L.S, Howell, P.L.
Deposit date:2016-08-17
Release date:2017-03-15
Last modified:2023-10-04
Method:X-RAY DIFFRACTION (2.4987 Å)
Cite:Oligomeric lipoprotein PelC guides Pel polysaccharide export across the outer membrane of Pseudomonas aeruginosa.
Proc. Natl. Acad. Sci. U.S.A., 114, 2017
5T0Z
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BU of 5t0z by Molmil
PelC from Geobacter metallireducens
Descriptor: Lipoprotein, putative
Authors:Marmont, L.S, Howell, P.L.
Deposit date:2016-08-17
Release date:2017-03-15
Last modified:2024-03-06
Method:X-RAY DIFFRACTION (2.255 Å)
Cite:Oligomeric lipoprotein PelC guides Pel polysaccharide export across the outer membrane of Pseudomonas aeruginosa.
Proc. Natl. Acad. Sci. U.S.A., 114, 2017
5T11
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BU of 5t11 by Molmil
PelC L103M dodecamer from Paraburkholderia phytofirmans, space group C2
Descriptor: Uncharacterized protein
Authors:Marmont, L.S, Howell, P.L.
Deposit date:2016-08-17
Release date:2017-03-15
Last modified:2024-10-09
Method:X-RAY DIFFRACTION (2.104 Å)
Cite:Oligomeric lipoprotein PelC guides Pel polysaccharide export across the outer membrane of Pseudomonas aeruginosa.
Proc. Natl. Acad. Sci. U.S.A., 114, 2017
3ZJT
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BU of 3zjt by Molmil
Ternary complex of E.coli leucyl-tRNA synthetase, tRNA(Leu)574 and the benzoxaborole AN3017 in the editing conformation
Descriptor: LEUCYL-TRNA SYNTHETASE, MAGNESIUM ION, TRNALEU5 UAA ISOACCEPTOR
Authors:Cusack, S, Palencia, A, Crepin, T, Hernandez, V, Akama, T, Baker, S.J, Bu, W, Feng, L, Freund, Y.R, Liu, L, Meewan, M, Mohan, M, Mao, W, Rock, F.L, Sexton, H, Sheoran, A, Zhang, Y, Zhang, Y, Zhou, Y, Nieman, J.A, Anugula, M.R, Keramane, E.M, Savariraj, K, Reddy, D.S, Sharma, R, Subedi, R, Singh, R, OLeary, A, Simon, N.L, DeMarsh, P.L, Mushtaq, S, Warner, M, Livermore, D.M, Alley, M.R.K, Plattner, J.J.
Deposit date:2013-01-18
Release date:2013-04-17
Last modified:2023-12-20
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Discovery of a Novel Class of Boron-Based Antibacterials with Activity Against Gram-Negative Bacteria.
Antimicrob.Agents Chemother., 57, 2013
3ZJV
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BU of 3zjv by Molmil
Ternary complex of E .coli leucyl-tRNA synthetase, tRNA(Leu) and the benzoxaborole AN3213 in the editing conformation
Descriptor: LEUCINE--TRNA LIGASE, TRNALEU5 UAA ISOACCEPTOR
Authors:Cusack, S, Palencia, A, Crepin, T, Hernandez, V, Akama, T, Baker, S.J, Bu, W, Feng, L, Freund, Y.R, Liu, L, Meewan, M, Mohan, M, Mao, W, Rock, F.L, Sexton, H, Sheoran, A, Zhang, Y, Zhang, Y, Zhou, Y, Nieman, J.A, Anugula, M.R, Keramane, E.M, Savariraj, K, Reddy, D.S, Sharma, R, Subedi, R, Singh, R, OLeary, A, Simon, N.L, DeMarsh, P.L, Mushtaq, S, Warner, M, Livermore, D.M, Alley, M.R.K, Plattner, J.J.
Deposit date:2013-01-18
Release date:2013-04-17
Last modified:2023-12-20
Method:X-RAY DIFFRACTION (2.31 Å)
Cite:Discovery of a Novel Class of Boron-Based Antibacterials with Activity Against Gram-Negative Bacteria.
Antimicrob.Agents Chemother., 57, 2013
3ZJU
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BU of 3zju by Molmil
Ternary complex of E .coli leucyl-tRNA synthetase, tRNA(Leu) and the benzoxaborole AN3016 in the editing conformation
Descriptor: LEUCYL-TRNA SYNTHETASE, MAGNESIUM ION, TRNALEU5 UAA ISOACCEPTOR
Authors:Cusack, S, Palencia, A, Crepin, T, Hernandez, V, Akama, T, Baker, S.J, Bu, W, Feng, L, Freund, Y.R, Liu, L, Meewan, M, Mohan, M, Mao, W, Rock, F.L, Sexton, H, Sheoran, A, Zhang, Y, Zhang, Y, Zhou, Y, Nieman, J.A, Anugula, M.R, Keramane, E.M, Savariraj, K, Reddy, D.S, Sharma, R, Subedi, R, Singh, R, OLeary, A, Simon, N.L, DeMarsh, P.L, Mushtaq, S, Warner, M, Livermore, D.M, Alley, M.R.K, Plattner, J.J.
Deposit date:2013-01-18
Release date:2013-04-17
Last modified:2023-12-20
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:Discovery of a Novel Class of Boron-Based Antibacterials with Activity Against Gram-Negative Bacteria.
Antimicrob.Agents Chemother., 57, 2013
7MSI
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BU of 7msi by Molmil
TYPE III ANTIFREEZE PROTEIN ISOFORM HPLC 12
Descriptor: TYPE III ANTIFREEZE PROTEIN ISOFORM HPLC 12
Authors:Deluca, C.I, Davies, P.L, Ye, Q, Jia, Z.
Deposit date:1997-09-17
Release date:1998-10-21
Last modified:2024-05-22
Method:X-RAY DIFFRACTION (1.7 Å)
Cite:The effects of steric mutations on the structure of type III antifreeze protein and its interaction with ice.
J.Mol.Biol., 275, 1998
4YEG
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BU of 4yeg by Molmil
Characterisation of Polyphosphate Kinase 2 from the Intracellular Pathogen Francisella tularensis
Descriptor: Polyphosphate kinase 2
Authors:Parnell, A.E, Roach, P.L.
Deposit date:2015-02-24
Release date:2015-12-02
Last modified:2024-01-10
Method:X-RAY DIFFRACTION (2.23 Å)
Cite:Biochemical and structural characterization of polyphosphate kinase 2 from the intracellular pathogen Francisella tularensis.
Biosci.Rep., 36, 2016

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