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PDB: 45955 results

2PB1
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Exo-B-(1,3)-Glucanase from Candida Albicans in complex with unhydrolysed and covalently linked 2,4-dinitrophenyl-2-deoxy-2-fluoro-B-D-glucopyranoside at 1.9 A
Descriptor: 2,4-dinitrophenyl 2-deoxy-2-fluoro-beta-D-glucopyranoside, 2-deoxy-2-fluoro-alpha-D-glucopyranose, Hypothetical protein XOG1
Authors:Cutfield, S.M, Cutfield, J.F, Davies, G.J, Sullivan, P.A.
Deposit date:2007-03-28
Release date:2007-04-10
Last modified:2023-08-30
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Exo-B-(1,3)-Glucanase from Candida Albicans in complex with unhydrolysed and covalently linked 2,4-dinitrophenyl-2-deoxy-2-fluoro-B-D-glucopyranoside at 1.9 A
To be Published
5U3Z
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BU of 5u3z by Molmil
Human PPARdelta ligand-binding domain in complexed with specific agonist 10
Descriptor: 6-[2-({cyclopropyl[4-(furan-3-yl)benzene-1-carbonyl]amino}methyl)phenoxy]hexanoic acid, DI(HYDROXYETHYL)ETHER, Peroxisome proliferator-activated receptor delta, ...
Authors:Wu, C.-C, Baiga, T.J, Downes, M, La Clair, J.J, Atkins, A.R, Richard, S.B, Stockley-Noel, T.A, Bowman, M.E, Evans, R.M, Noel, J.P.
Deposit date:2016-12-03
Release date:2017-03-22
Last modified:2023-10-04
Method:X-RAY DIFFRACTION (1.72 Å)
Cite:Structural basis for specific ligation of the peroxisome proliferator-activated receptor delta.
Proc. Natl. Acad. Sci. U.S.A., 114, 2017
2XJO
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BU of 2xjo by Molmil
Crystal structure of Streptococcus suis Dpr with nickel
Descriptor: 4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID, CALCIUM ION, CHLORIDE ION, ...
Authors:Haikarainen, T, Thanassoulas, A, Stavros, P, Nounesis, G, Haataja, S, Papageorgiou, A.C.
Deposit date:2010-07-06
Release date:2010-11-24
Last modified:2024-05-08
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Structural and Thermodynamic Characterization of Metal Ion Binding in Streptococcus Suis Dpr.
J.Mol.Biol., 405, 2011
3BYC
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BU of 3byc by Molmil
Joint neutron and X-ray structure of diisopropyl fluorophosphatase. Deuterium occupancies are 1-Q, where Q is occupancy of H
Descriptor: CALCIUM ION, Diisopropyl-fluorophosphatase
Authors:Blum, M.-M, Mustyakimov, M, Ruterjans, H, Schoenborn, B.P, Langan, P, Chen, J.C.-H.
Deposit date:2008-01-15
Release date:2009-01-27
Last modified:2024-02-21
Method:NEUTRON DIFFRACTION (2.2 Å), X-RAY DIFFRACTION
Cite:Rapid determination of hydrogen positions and protonation states of diisopropyl fluorophosphatase by joint neutron and X-ray diffraction refinement.
Proc.Natl.Acad.Sci.Usa, 106, 2009
3EW3
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the 1:2 complex between a Nterminal elongated prolactin and the extra cellular domain of the rat prolactin receptor
Descriptor: Prolactin, Prolactin receptor
Authors:Broutin, I, Jomain, J.B, England, P, Goffin, V.
Deposit date:2008-10-14
Release date:2009-11-03
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (3.8 Å)
Cite:Crystal structure of an affinity-matured prolactin complexed to its dimerized receptor reveals the topology of hormone binding site 2.
J.Biol.Chem., 285, 2010
5U6E
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Crystal structure of clade A/E HIV-1 gp120 core in complex with NBD-14010
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, 4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID, N-{(1S)-2-amino-1-[5-(hydroxymethyl)-4-methyl-1,3-thiazol-2-yl]ethyl}-5-(4-chloro-3-fluorophenyl)-1H-pyrrole-2-carboxamide, ...
Authors:Kwon, Y.D, Debnath, A.K, Kwong, P.D.
Deposit date:2016-12-07
Release date:2017-03-22
Last modified:2023-10-04
Method:X-RAY DIFFRACTION (2.095 Å)
Cite:Synthesis, Antiviral Potency, in Vitro ADMET, and X-ray Structure of Potent CD4 Mimics as Entry Inhibitors That Target the Phe43 Cavity of HIV-1 gp120.
J. Med. Chem., 60, 2017
3EWF
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BU of 3ewf by Molmil
Crystal Structure Analysis of human HDAC8 H143A variant complexed with substrate.
Descriptor: 7-AMINO-4-METHYL-CHROMEN-2-ONE, Histone deacetylase 8, PEPTIDIC SUBSTRATE, ...
Authors:Dowling, D.P, Gantt, S.L, Gattis, S.G, Fierke, C.A, Christianson, D.W.
Deposit date:2008-10-14
Release date:2008-12-30
Last modified:2023-11-15
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:Structural studies of human histone deacetylase 8 and its site-specific variants complexed with substrate and inhibitors.
Biochemistry, 47, 2008
3EXY
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BU of 3exy by Molmil
Crystal structure of the 2[4Fe-4S] ferredoxin V13G variant from allochromatium vinosum
Descriptor: Ferredoxin, IRON/SULFUR CLUSTER
Authors:Giastas, P, Saridakis, E, Mavridis, I.M.
Deposit date:2008-10-17
Release date:2009-05-05
Last modified:2023-09-06
Method:X-RAY DIFFRACTION (1.48 Å)
Cite:Insight into the protein and solvent contributions to the reduction potentials of [4Fe-4S]2+/+ clusters: crystal structures of the Allochromatium vinosum ferredoxin variants C57A and V13G and the homologous Escherichia coli ferredoxin.
J.Biol.Inorg.Chem., 14, 2009
2ONK
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BU of 2onk by Molmil
ABC transporter ModBC in complex with its binding protein ModA
Descriptor: MAGNESIUM ION, Molybdate/tungstate ABC transporter, ATP-binding protein, ...
Authors:Hollenstein, K, Frei, D.C, Locher, K.P.
Deposit date:2007-01-24
Release date:2007-03-06
Last modified:2023-12-27
Method:X-RAY DIFFRACTION (3.1 Å)
Cite:Structure of an ABC transporter in complex with its binding protein.
Nature, 446, 2007
2GAR
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BU of 2gar by Molmil
A PH-DEPENDENT STABLIZATION OF AN ACTIVE SITE LOOP OBSERVED FROM LOW AND HIGH PH CRYSTAL STRUCTURES OF MUTANT MONOMERIC GLYCINAMIDE RIBONUCLEOTIDE TRANSFORMYLASE
Descriptor: GLYCINAMIDE RIBONUCLEOTIDE TRANSFORMYLASE, PHOSPHATE ION
Authors:Su, Y, Yamashita, M.M, Greasley, S.E, Mullen, C.A, Shim, J.H, Jennings, P.A, Benkovic, S.J, Wilson, I.A.
Deposit date:1998-05-13
Release date:1998-08-12
Last modified:2024-05-29
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:A pH-dependent stabilization of an active site loop observed from low and high pH crystal structures of mutant monomeric glycinamide ribonucleotide transformylase at 1.8 to 1.9 A.
J.Mol.Biol., 281, 1998
2QQ3
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Crystal Structure Of Enoyl-CoA Hydrates Subunit I (gk_2039) Other Form From Geobacillus Kaustophilus HTA426
Descriptor: 1,2-ETHANEDIOL, Enoyl-CoA hydratase subunit I
Authors:Jeyakanthan, J, Kanaujia, S.P, Sekar, K, Ebihara, A, Shinkai, A, Kuramitsu, S, Yokoyama, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2007-07-26
Release date:2008-07-29
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (1.95 Å)
Cite:Crystal Structure Of Enoyl-CoA Hydrates Subunit I (gk_2039) Other Form From Geobacillus Kaustophilus HTA426
To be Published
2OST
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The structure of a bacterial homing endonuclease : I-Ssp6803I
Descriptor: CALCIUM ION, Putative endonuclease, Synthetic DNA 29 MER
Authors:Zhao, L, Bonocora, R.P, Shub, D.A, Stoddard, B.L.
Deposit date:2007-02-06
Release date:2007-03-20
Last modified:2024-02-21
Method:X-RAY DIFFRACTION (3.1 Å)
Cite:The restriction fold turns to the dark side: a bacterial homing endonuclease with a PD-(D/E)-XK motif.
Embo J., 26, 2007
3QV9
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BU of 3qv9 by Molmil
Crystal structure of Trypanosoma cruzi pyruvate kinase(TcPYK)in complex with ponceau S.
Descriptor: 3-hydroxy-4-[(E)-{2-sulfo-4-[(E)-(4-sulfophenyl)diazenyl]phenyl}diazenyl]naphthalene-2,7-disulfonic acid, PHOSPHATE ION, POTASSIUM ION, ...
Authors:Morgan, H.P, Auld, D.S, McNae, I.W, Nowicki, M.W, Michels, P.A.M, Fothergill-Gilmore, L.A, Walkinshaw, M.D.
Deposit date:2011-02-25
Release date:2011-07-06
Last modified:2024-02-21
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:The trypanocidal drug suramin and other trypan blue mimetics are inhibitors of pyruvate kinases and bind to the adenosine site.
J.Biol.Chem., 286, 2011
1H3J
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BU of 1h3j by Molmil
STRUCTURE OF RECOMBINANT COPRINUS CINEREUS PEROXIDASE DETERMINED TO 2.0 A
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, CALCIUM ION, MAGNESIUM ION, ...
Authors:Petersen, J.F.W, Houborg, K, Harris, P, Larsen, S.
Deposit date:2002-09-05
Release date:2003-06-12
Last modified:2023-02-01
Method:X-RAY DIFFRACTION (2 Å)
Cite:Impact of the Physical and Chemical Environment on the Molecular Structure of Coprinus Cinereus Peroxidase
Acta Crystallogr.,Sect.D, 59, 2003
4F2E
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Crystal structure of the Streptococcus pneumoniae D39 copper chaperone CupA with Cu(I)
Descriptor: CHLORIDE ION, COPPER (I) ION, CupA
Authors:Fu, Y, Dann III, C.E, Giedroc, D.P.
Deposit date:2012-05-07
Release date:2013-01-30
Last modified:2024-02-28
Method:X-RAY DIFFRACTION (1.449 Å)
Cite:A new structural paradigm in copper resistance in Streptococcus pneumoniae.
Nat.Chem.Biol., 9, 2013
1ZVL
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BU of 1zvl by Molmil
Rat Neuronal Nitric Oxide Synthase Oxygenase Domain complexed with natural substrate L-Arg.
Descriptor: 5,6,7,8-TETRAHYDROBIOPTERIN, ARGININE, Nitric-oxide synthase, ...
Authors:Matter, H, Kumar, H.S, Fedorov, R, Frey, A, Kotsonis, P, Hartmann, E, Frohlich, L.G, Reif, A, Pfleiderer, W, Scheurer, P, Ghosh, D.K, Schlichting, I, Schmidt, H.H.
Deposit date:2005-06-02
Release date:2005-08-02
Last modified:2024-02-14
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:Structural Analysis of Isoform-Specific Inhibitors Targeting the Tetrahydrobiopterin Binding Site of Human Nitric Oxide Synthases.
J.Med.Chem., 48, 2005
2QFX
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BU of 2qfx by Molmil
Crystal structure of Saccharomyces cerevesiae mitochondrial NADP(+)-dependent isocitrate dehydrogenase in complex with NADPH, a-ketoglutarate and Ca(2+)
Descriptor: 2-OXOGLUTARIC ACID, CALCIUM ION, Isocitrate dehydrogenase [NADP], ...
Authors:Peng, Y.J, Ding, J.P.
Deposit date:2007-06-28
Release date:2008-07-01
Last modified:2023-11-15
Method:X-RAY DIFFRACTION (2.7 Å)
Cite:Structural studies of Saccharomyces cerevesiae mitochondrial NADP-dependent isocitrate dehydrogenase in different enzymatic states reveal substantial conformational changes during the catalytic reaction
Protein Sci., 17, 2008
1QGM
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BU of 1qgm by Molmil
THE SOLUTION STRUCTURE OF A 30 RESIDUE AMINO-TERMINAL DOMAIN OF THE CARP GRANULIN-1 PROTEIN.
Descriptor: PROTEIN (AMINO-TERMINAL CARP GRANULIN-1)
Authors:Vranken, W.F, Xu, P, Ni, F.
Deposit date:1999-05-01
Release date:1999-12-22
Last modified:2023-12-27
Method:SOLUTION NMR
Cite:A 30-residue fragment of the carp granulin-1 protein folds into a stack of two beta-hairpins similar to that found in the native protein.
J.Pept.Res., 53, 1999
2A7E
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BU of 2a7e by Molmil
On the Routine Use of Soft X-Rays in Macromolecular Crystallography, Part III- The Optimal Data Collection Wavelength
Descriptor: DNA (5'-D(*CP*CP*CP*TP*AP*GP*GP*G)-3')
Authors:Mueller-Dieckmann, C, Panjikar, S, Tucker, P.A, Weiss, M.S.
Deposit date:2005-07-05
Release date:2005-07-19
Last modified:2024-02-14
Method:X-RAY DIFFRACTION (1.66 Å)
Cite:On the routine use of soft X-rays in macromolecular crystallography. Part III. The optimal data-collection wavelength.
Acta Crystallogr.,Sect.D, 61, 2005
2DP5
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BU of 2dp5 by Molmil
Structure of streptococcus pyogenes bacteriophage-associated hyaluronate lyase Hylp2
Descriptor: Hyaluronidase
Authors:Mishra, P, Bhakuni, V, Prem Kumar, R, Singh, N, Sharma, S, Kaur, P, Singh, T.P.
Deposit date:2006-05-06
Release date:2006-05-30
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (3.55 Å)
Cite:Structure of streptococcus pyogenes bacteriophage-associated hyaluronate lyase Hylp2
To be Published
4BAI
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Mycobacterium tuberculosis Chorismate synthase before exposure to 266 nm UV laser
Descriptor: ACETATE ION, CHORISMATE SYNTHASE
Authors:Pereira, P.J.B, Royant, A, Panjikar, S, de Sanctis, D.
Deposit date:2012-09-14
Release date:2013-04-17
Last modified:2023-11-15
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:In-house UV radiation-damage-induced phasing of selenomethionine-labeled protein structures.
J. Struct. Biol., 181, 2013
1NBK
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BU of 1nbk by Molmil
The structure of RNA aptamer for HIV Tat complexed with two argininamide molecules
Descriptor: 2-AMINO-5-GUANIDINO-PENTANOIC ACID, RNA aptamer
Authors:Matsugami, A, Kobayashi, S, Ouhashi, K, Uesugi, S, Yamamoto, R, Taira, K, Nishikawa, S, Kumar, P.K.R, Katahira, M.
Deposit date:2002-12-03
Release date:2003-12-03
Last modified:2024-05-29
Method:SOLUTION NMR
Cite:Structural Basis of the Highly Efficient Trapping of the HIV Tat Protein by an RNA Aptamer
Structure, 11, 2003
230D
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SOLUTION STRUCTURES OF UNIMOLECULAR QUADRUPLEXES FORMED BY OLIGONUCLEOTIDES CONTAINING OXYTRICHA TELOMERE REPEATS
Descriptor: QUADRUPLEXES DNA
Authors:Smith, F.W, Schultze, P, Feigon, J.
Deposit date:1995-08-24
Release date:1995-10-15
Last modified:2024-05-22
Method:SOLUTION NMR
Cite:Solution structures of unimolecular quadruplexes formed by oligonucleotides containing Oxytricha telomere repeats.
Structure, 3, 1995
2QFB
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Crystal structure of the regulatory domain of human RIG-I with bound Zn
Descriptor: Probable ATP-dependent RNA helicase DDX58, ZINC ION
Authors:Cui, S, Lammens, A, Lammens, K, Hopfner, K.P.
Deposit date:2007-06-27
Release date:2008-02-12
Last modified:2023-08-30
Method:X-RAY DIFFRACTION (3 Å)
Cite:The C-Terminal Regulatory Domain Is the RNA 5'-Triphosphate Sensor of RIG-I.
Mol.Cell, 29, 2008
2A0C
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BU of 2a0c by Molmil
Human CDK2 in complex with olomoucine II, a novel 2,6,9-trisubstituted purine cyclin-dependent kinase inhibitor
Descriptor: 2-{[(2-{[(1R)-1-(HYDROXYMETHYL)PROPYL]AMINO}-9-ISOPROPYL-9H-PURIN-6-YL)AMINO]METHYL}PHENOL, Cell division protein kinase 2
Authors:Krystof, V, McNae, I.W, Walkinshaw, M.D, Fischer, P.M, Muller, P, Vojtesek, B, Orsag, M, Havlicek, L, Strnad, M.
Deposit date:2005-06-16
Release date:2006-01-24
Last modified:2024-03-13
Method:X-RAY DIFFRACTION (1.95 Å)
Cite:Antiproliferative activity of olomoucine II, a novel 2,6,9-trisubstituted purine cyclin-dependent kinase inhibitor
Cell.Mol.Life Sci., 62, 2005

224004

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