Loading
PDBj
MenuPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help
PDB: 45697 results

8OE9
DownloadVisualize
BU of 8oe9 by Molmil
Crystal structure of the Z-DNA duplex d(CGCGCG) soaked in copper(II) chloride and hydrogen peroxide
Descriptor: DNA (5'-D(*CP*GP*CP*GP*CP*G)-3'), SPERMINE
Authors:Lambert, M.C, Hall, J.P.
Deposit date:2023-03-10
Release date:2024-03-27
Method:X-RAY DIFFRACTION (1.04 Å)
Cite:Structural analysis of peroxide-soaked DNA crystals containing ordered copper binding sites: towards understanding oxidative damage at the atomic scale
To Be Published
8OEC
DownloadVisualize
BU of 8oec by Molmil
Crystal structure of the Z-DNA duplex d(CGCGCG) containing ordered copper(II) and soaked in hydrogen peroxide for another 30 minutes, third collection at room temperature
Descriptor: COPPER (II) ION, DNA (5'-D(*CP*GP*CP*GP*CP*G)-3'), SPERMINE
Authors:Lambert, M.C, Hall, J.P.
Deposit date:2023-03-10
Release date:2024-03-27
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Structural analysis of peroxide-soaked DNA crystals containing ordered copper binding sites: towards understanding oxidative damage at the atomic scale
To Be Published
7S5A
DownloadVisualize
BU of 7s5a by Molmil
Crystal structure of human chemokine CCL8
Descriptor: C-C motif chemokine 8
Authors:Bhusal, R.P, Devkota, S.R, Aryal, P, Wilce, M.C.J, Stone, M.J.
Deposit date:2021-09-10
Release date:2021-09-29
Last modified:2023-10-18
Method:X-RAY DIFFRACTION (1.37 Å)
Cite:Structure-guided engineering of tick evasins for targeting chemokines in inflammatory diseases.
Proc.Natl.Acad.Sci.USA, 119, 2022
8CRV
DownloadVisualize
BU of 8crv by Molmil
Crystal Structure of the Carbamate Kinase from Pseudomonas aeruginosa
Descriptor: 1,2-ETHANEDIOL, Carbamate kinase, FORMIC ACID, ...
Authors:Kim, Y, Skarina, T, Mesa, N, Stogios, P, Savchenko, S, Joachimiak, A, Center for Structural Genomics of Infectious Diseases (CSGID)
Deposit date:2022-05-11
Release date:2022-08-10
Last modified:2024-04-03
Method:X-RAY DIFFRACTION (1.6 Å)
Cite:Crystal Structure of the Carbamate Kinase from Pseudomonas aeruginosa
To Be Published
6XGT
DownloadVisualize
BU of 6xgt by Molmil
Crystal structure of cyanase from the thermophilic fungus Thermomyces lanuginosus
Descriptor: Cyanate hydratase, FORMIC ACID, MALONATE ION
Authors:Choi, P.H, Ranjan, B, Tong, L.
Deposit date:2020-06-18
Release date:2021-01-27
Last modified:2023-10-18
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Crystal structure of a thermophilic fungal cyanase and its implications on the catalytic mechanism for bioremediation.
Sci Rep, 11, 2021
8K7J
DownloadVisualize
BU of 8k7j by Molmil
Crystal structure of human lysosomal alpha-galactosidase A in complex with (2R,3R,4S,5R)-2-((dimethylamino)methyl)-5-(hydroxymethyl)pyrrolidine-3,4-diol
Descriptor: (2~{R},3~{R},4~{S},5~{R})-2-[(dimethylamino)methyl]-5-(hydroxymethyl)pyrrolidine-3,4-diol, 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, ...
Authors:Li, H.Y, Huang, K.F, Ko, T.P, Cheng, W.C.
Deposit date:2023-07-26
Release date:2024-04-10
Method:X-RAY DIFFRACTION (2.01 Å)
Cite:Mechanistic Insights into Dibasic Iminosugars as pH-Selective Pharmacological Chaperones to Stabilize Human alpha-Galactosidase.
Jacs Au, 4, 2024
7Z0W
DownloadVisualize
BU of 7z0w by Molmil
E. coli NfsA bound to NADP+
Descriptor: 2'-MONOPHOSPHOADENOSINE-5'-DIPHOSPHATE, FLAVIN MONONUCLEOTIDE, MAGNESIUM ION, ...
Authors:White, S.A, Grainger, A, Parr, R, Day, M.A, Jarrom, D, Graziano, A, Searle, P.F, Hyde, E.I.
Deposit date:2022-02-23
Release date:2022-07-20
Last modified:2024-01-31
Method:X-RAY DIFFRACTION (2.06 Å)
Cite:The 3D-structure, kinetics and dynamics of the E. coli nitroreductase NfsA with NADP + provide glimpses of its catalytic mechanism.
Febs Lett., 596, 2022
5ENJ
DownloadVisualize
BU of 5enj by Molmil
Crystal structure of the second bromodomain of Pleckstrin homology domain interacting protein (PHIP) in complex with compound-14 N11530 (SGC - Diamond I04-1 fragment screening)
Descriptor: MAGNESIUM ION, PH-interacting protein, ~{N}-[[2,6-bis(chloranyl)phenyl]methyl]-~{N}-methyl-ethanamide
Authors:Krojer, T, Talon, R, Collins, P, Bradley, A, Cox, O, Szykowska, A, Burgess-Brown, N, Brennan, P, Bountra, C, Arrowsmith, C.H, Edwards, A, von Delft, F, Structural Genomics Consortium (SGC)
Deposit date:2015-11-09
Release date:2016-04-27
Last modified:2024-01-10
Method:X-RAY DIFFRACTION (1.63 Å)
Cite:A poised fragment library enables rapid synthetic expansion yielding the first reported inhibitors of PHIP(2), an atypical bromodomain.
Chem Sci, 7, 2016
6EBN
DownloadVisualize
BU of 6ebn by Molmil
Crystal structure of Psilocybe cubensis noncanonical aromatic amino acid decarboxylase
Descriptor: FORMIC ACID, GLYCEROL, SODIUM ION, ...
Authors:Torrens-Spence, M.P, Chun-Ting, L, Pluskal, T, Chung, Y.K, Weng, J.K.
Deposit date:2018-08-06
Release date:2018-12-12
Last modified:2023-11-15
Method:X-RAY DIFFRACTION (1.9663111 Å)
Cite:Monoamine Biosynthesis via a Noncanonical Calcium-Activatable Aromatic Amino Acid Decarboxylase in Psilocybin Mushroom.
ACS Chem. Biol., 13, 2018
3I3J
DownloadVisualize
BU of 3i3j by Molmil
Crystal Structure of the Bromodomain of Human EP300
Descriptor: CHLORIDE ION, DI(HYDROXYETHYL)ETHER, Histone acetyltransferase p300, ...
Authors:Filippakopoulos, P, Picaud, S, Phillips, C, Pike, A.C.W, Muniz, J, Roos, A, Chaikuad, A, von Delft, F, Arrowsmith, C.H, Edwards, A.M, Weigelt, J, Bountra, C, Knapp, S, Structural Genomics Consortium (SGC)
Deposit date:2009-06-30
Release date:2009-07-28
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (2.33 Å)
Cite:Histone recognition and large-scale structural analysis of the human bromodomain family.
Cell(Cambridge,Mass.), 149, 2012
6RNL
DownloadVisualize
BU of 6rnl by Molmil
L-[Ru(TAP)2(dppz)]2+ bound to the G-quadruplex forming sequence d(TAGGGTT)
Descriptor: DNA (5'-D(*TP*AP*GP*GP*GP*TP*T)-3'), POTASSIUM ION, Ru(tap)2(dppz) complex, ...
Authors:McQuaid, K.T, Hall, J.P, Cardin, C.J.
Deposit date:2019-05-09
Release date:2019-08-28
Last modified:2024-05-15
Method:X-RAY DIFFRACTION (1.88 Å)
Cite:Three thymine/adenine binding modes of the ruthenium complex Lambda-[Ru(TAP)2(dppz)]2+to the G-quadruplex forming sequence d(TAGGGTT) shown by X-ray crystallography.
Chem.Commun.(Camb.), 55, 2019
6ULS
DownloadVisualize
BU of 6uls by Molmil
BRD4-BD1 in complex with the a diacetylated-E2F1 peptide
Descriptor: Bromodomain-containing protein 4, Diacetylated E2F1 Peptide (K117ac and K120ac)
Authors:Patel, K, Low, J.K.K, Mackay, J.P.
Deposit date:2019-10-08
Release date:2020-08-19
Last modified:2023-11-15
Method:X-RAY DIFFRACTION (1.5 Å)
Cite:BET-Family Bromodomains Can Recognize Diacetylated Sequences from Transcription Factors Using a Conserved Mechanism.
Biochemistry, 60, 2021
8C77
DownloadVisualize
BU of 8c77 by Molmil
Human cathepsin L after reaction with the thiocarbazate inhibitor CID 16725315
Descriptor: 1,2-ETHANEDIOL, ACETATE ION, Cathepsin L, ...
Authors:Falke, S, Lieske, J, Guenther, S, Reinke, P.Y.A, Ewert, W, Loboda, J, Karnicar, K, Usenik, A, Lindic, N, Sekirnik, A, Chapman, H.N, Hinrichs, W, Turk, D, Meents, A.
Deposit date:2023-01-12
Release date:2023-01-25
Last modified:2024-05-22
Method:X-RAY DIFFRACTION (1.7 Å)
Cite:Structural Elucidation and Antiviral Activity of Covalent Cathepsin L Inhibitors.
J.Med.Chem., 67, 2024
7RZ8
DownloadVisualize
BU of 7rz8 by Molmil
Structure of the complex of LBD-TMD part of AMPA receptor GluA2 with auxiliary subunit TARP gamma-5 bound to agonist quisqualate
Descriptor: (S)-2-AMINO-3-(3,5-DIOXO-[1,2,4]OXADIAZOLIDIN-2-YL)-PROPIONIC ACID, 1,2-DIOLEOYL-SN-GLYCERO-3-PHOSPHOCHOLINE, Glutamate receptor 2
Authors:Klykov, O.V, Gangwar, S.P, Yelshanskaya, M.V, Sobolevsky, A.I.
Deposit date:2021-08-27
Release date:2021-10-27
Last modified:2022-02-16
Method:ELECTRON MICROSCOPY (4.1 Å)
Cite:Structure and desensitization of AMPA receptor complexes with type II TARP gamma 5 and GSG1L.
Mol.Cell, 81, 2021
7RWT
DownloadVisualize
BU of 7rwt by Molmil
Adeno-associated virus type 2
Descriptor: Capsid protein VP1
Authors:Hull, J.A, Mietzsch, M, Chipman, P, Strugatsky, D, McKenna, R.
Deposit date:2021-08-20
Release date:2021-10-20
Last modified:2024-06-05
Method:ELECTRON MICROSCOPY (2.43 Å)
Cite:Structural characterization of an envelope-associated adeno-associated virus type 2 capsid.
Virology, 565, 2021
8TJT
DownloadVisualize
BU of 8tjt by Molmil
The Fab fragment of an anti-glucagon receptor (GCGR) antibody
Descriptor: anti-GCGR Fab heavy chain, anti-GCGR Fab light chain
Authors:Dai, J, Carter, P.J, Sudhamsu, J, Kung, J.
Deposit date:2023-07-24
Release date:2024-02-14
Method:X-RAY DIFFRACTION (2.7 Å)
Cite:Variable domain mutational analysis to probe the molecular mechanisms of high viscosity of an IgG 1 antibody.
Mabs, 16, 2024
3HOH
DownloadVisualize
BU of 3hoh by Molmil
RIBONUCLEASE T1 (THR93GLN MUTANT) COMPLEXED WITH 2'GMP
Descriptor: CALCIUM ION, GUANOSINE-2'-MONOPHOSPHATE, PROTEIN (RIBONUCLEASE T1)
Authors:Langhorst, U, Loris, R, Denisov, V.P, Doumen, J, Roose, P, Maes, D, Halle, B, Steyaert, J.
Deposit date:1998-09-11
Release date:1998-09-16
Last modified:2023-09-06
Method:X-RAY DIFFRACTION (1.95 Å)
Cite:Dissection of the structural and functional role of a conserved hydration site in RNase T1.
Protein Sci., 8, 1999
5XF4
DownloadVisualize
BU of 5xf4 by Molmil
Nucleosome core particle with an adduct of a binuclear RAPTA (Ru-arene-phosphaadamantane) compound having a 1,2-diphenylethylenediamine linker (S,S-configuration)
Descriptor: (1S,2S)-1,2-diphenylethane-1,2-diamine, DNA (145-MER), Histone H2A type 1-B/E, ...
Authors:Ma, Z, Adhireksan, Z, Murray, B.S, Dyson, P.J, Davey, C.A.
Deposit date:2017-04-07
Release date:2017-10-11
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (2.87 Å)
Cite:Nucleosome acidic patch-targeting binuclear ruthenium compounds induce aberrant chromatin condensation
Nat Commun, 8, 2017
8F6X
DownloadVisualize
BU of 8f6x by Molmil
cryo-EM structure of a structurally designed Human metapneumovirus F protein in complex with antibody MPE8
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, MPE8 Single chain variable fragment, Structurally designed HMPV F protein HMPV_v3B_D12_DS454,Fibritin
Authors:Zhou, T, Kwong, P.D, Morano, N.C, Ou, L.
Deposit date:2022-11-17
Release date:2023-08-02
Method:ELECTRON MICROSCOPY (3.25 Å)
Cite:cryo-EM structure of a structurally designed Human metapneumovirus F protein in complex with antibody MPE8
To Be Published
8K7D
DownloadVisualize
BU of 8k7d by Molmil
Crystal structure of human lysosomal alpha-galactosidase A in complex with (2R,3R,4S,5R)-2-(aminomethyl)-5-(hydroxymethyl)pyrrolidine-3,4-diol
Descriptor: (2~{R},3~{R},4~{S},5~{R})-2-(aminomethyl)-5-(hydroxymethyl)pyrrolidine-3,4-diol, 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, ...
Authors:Li, H.Y, Huang, K.F, Ko, T.P, Cheng, W.C.
Deposit date:2023-07-26
Release date:2024-04-10
Method:X-RAY DIFFRACTION (2.61 Å)
Cite:Mechanistic Insights into Dibasic Iminosugars as pH-Selective Pharmacological Chaperones to Stabilize Human alpha-Galactosidase.
Jacs Au, 4, 2024
8K7I
DownloadVisualize
BU of 8k7i by Molmil
Crystal structure of human lysosomal alpha-galactosidase A in complex with (2R,3S,4R,5R)-2-(hydroxymethyl)-5-((methylamino)methyl)pyrrolidine-3,4-diol
Descriptor: (2~{R},3~{S},4~{R},5~{R})-2-(hydroxymethyl)-5-(methylaminomethyl)pyrrolidine-3,4-diol, 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, ...
Authors:Li, H.Y, Huang, K.F, Ko, T.P, Cheng, W.C.
Deposit date:2023-07-26
Release date:2024-04-10
Method:X-RAY DIFFRACTION (2.12 Å)
Cite:Mechanistic Insights into Dibasic Iminosugars as pH-Selective Pharmacological Chaperones to Stabilize Human alpha-Galactosidase.
Jacs Au, 4, 2024
8C7Y
DownloadVisualize
BU of 8c7y by Molmil
Crystal structure of BRAF V600E in complex with a hybrid compound 6
Descriptor: 1,2-ETHANEDIOL, NITRATE ION, Serine/threonine-protein kinase B-raf, ...
Authors:Chaikuad, A, Bonnet, P, Knapp, S, Structural Genomics Consortium (SGC)
Deposit date:2023-01-17
Release date:2023-02-22
Last modified:2024-06-19
Method:X-RAY DIFFRACTION (1.65 Å)
Cite:Design, synthesis and characterisation of a novel type II B-RAF paradox breaker inhibitor.
Eur.J.Med.Chem., 250, 2023
8C7X
DownloadVisualize
BU of 8c7x by Molmil
Crystal structure of BRAF in complex with a hybrid compound 6
Descriptor: 1,2-ETHANEDIOL, BROMIDE ION, Serine/threonine-protein kinase B-raf, ...
Authors:Chaikuad, A, Bonnet, P, Knapp, S, Structural Genomics Consortium (SGC)
Deposit date:2023-01-17
Release date:2023-02-22
Last modified:2024-06-19
Method:X-RAY DIFFRACTION (1.65 Å)
Cite:Design, synthesis and characterisation of a novel type II B-RAF paradox breaker inhibitor.
Eur.J.Med.Chem., 250, 2023
6ECA
DownloadVisualize
BU of 6eca by Molmil
Lactobacillus rhamnosus Beta-glucuronidase
Descriptor: Beta-glucuronidase, CHLORIDE ION, GLYCEROL
Authors:Biernat, K.A, Pellock, S.J, Bhatt, A.P, Bivins, M.M, Walton, W.G, Tran, B.N.T, Wei, L, Snider, M.C, Cesmat, A.P, Tripathy, A, Erie, D.A, Redinbo, M.R.R.
Deposit date:2018-08-07
Release date:2019-02-13
Last modified:2023-10-11
Method:X-RAY DIFFRACTION (2.853 Å)
Cite:Structure, function, and inhibition of drug reactivating human gut microbial beta-glucuronidases.
Sci Rep, 9, 2019
6UHK
DownloadVisualize
BU of 6uhk by Molmil
Crystal Structure of C176 mGFP
Descriptor: C176 mGFP
Authors:Winegar, P.W, Hayes, O.G, McMillan, J.R, Figg, C.A, Focia, P.J, Mirkin, C.A.
Deposit date:2019-09-27
Release date:2020-03-18
Last modified:2023-11-15
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:DNA-Directed Protein Packing within Single Crystals.
Chem, 6, 2020

222415

數據於2024-07-10公開中

PDB statisticsPDBj update infoContact PDBjnumon