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PDB: 46375 results

4DA2
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The structure of Pyrococcus Furiosus SfsA in complex with Ca2+
Descriptor: CALCIUM ION, Sugar fermentation stimulation protein homolog
Authors:Baker, P.J, Allen, F.L.
Deposit date:2012-01-12
Release date:2014-10-15
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:The structure of SfsA and its DNA complex; A DNA/RNA nuclease with a novel domain combination
To be Published
1UMZ
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BU of 1umz by Molmil
Xyloglucan endotransglycosylase in complex with the xyloglucan nonasaccharide XLLG.
Descriptor: XYLOGLUCAN ENDOTRANSGLYCOSYLASE, alpha-D-xylopyranose-(1-6)-beta-D-glucopyranose-(1-4)-[beta-D-galactopyranose-(1-2)-alpha-D-xylopyranose-(1-6)]beta-D-glucopyranose-(1-4)-beta-D-glucopyranose, beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose
Authors:Johansson, P, Brumer, H, Kallas, A.M, Henriksson, H, Denman, S.E, Teeri, T.T, Jones, T.A.
Deposit date:2003-09-03
Release date:2004-03-18
Last modified:2023-12-13
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Crystal Structures of a Poplar Xyloglucan Endotransglycosylase Reveal Details of Transglycosylation Acceptor Binding
Plant Cell, 16, 2004
8SB1
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CryoEM structure of DH270.I3-CH848.10.17
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, CH848.10.17 gp120, CH848.10.17.SOSIP gp41, ...
Authors:Henderson, R, Zhou, Y, Stalls, V, Bartesaghi, B, Acharya, P.
Deposit date:2023-04-02
Release date:2023-04-19
Last modified:2024-10-09
Method:ELECTRON MICROSCOPY (4.3 Å)
Cite:Structural basis for breadth development in the HIV-1 V3-glycan targeting DH270 antibody clonal lineage.
Nat Commun, 14, 2023
4DB9
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BU of 4db9 by Molmil
Designed Armadillo repeat protein (YIIIM3AIII)
Descriptor: Armadillo repeat protein, YIIIM3AIII
Authors:Madhurantakam, C, Varadamsetty, G, Grutter, M.G, Pluckthun, A, Mittl, P.R.E.
Deposit date:2012-01-13
Release date:2012-05-16
Last modified:2024-02-28
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:Structure-based optimization of designed Armadillo-repeat proteins.
Protein Sci., 21, 2012
8SAS
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BU of 8sas by Molmil
CryoEM structure of DH270.5-CH848.10.17
Descriptor: CH848.10.17 gp120, CH848.10.17 gp41, DH270.5 variable heavy chian, ...
Authors:Henderson, R, Zhou, Y, Stalls, V, Bartesaghi, B, Acharya, P.
Deposit date:2023-04-01
Release date:2023-04-19
Last modified:2023-05-31
Method:ELECTRON MICROSCOPY (4 Å)
Cite:Structural basis for breadth development in the HIV-1 V3-glycan targeting DH270 antibody clonal lineage.
Nat Commun, 14, 2023
5OY9
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BU of 5oy9 by Molmil
VSV G CR3
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, CALCIUM ION, ...
Authors:Albertini, A.A, Belot, L, Legrand, P, Gaudin, Y.
Deposit date:2017-09-08
Release date:2018-03-21
Last modified:2024-01-17
Method:X-RAY DIFFRACTION (3.6 Å)
Cite:Structural basis for the recognition of LDL-receptor family members by VSV glycoprotein.
Nat Commun, 9, 2018
5OYF
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BU of 5oyf by Molmil
The crystal structure of CK2alpha in complex with compound 31
Descriptor: 2-(1~{H}-benzimidazol-2-yl)-~{N}-[[4-(2-ethylphenyl)-3-methyl-phenyl]methyl]ethanamine, ACETATE ION, Casein kinase II subunit alpha
Authors:Brear, P, De Fusco, C, Iegre, J, Yoshida, M, Mitchell, S, Rossmann, M, Carro, L, Sore, H, Hyvonen, M, Spring, D.
Deposit date:2017-09-08
Release date:2018-02-28
Last modified:2024-01-17
Method:X-RAY DIFFRACTION (1.54 Å)
Cite:Second-generation CK2 alpha inhibitors targeting the alpha D pocket.
Chem Sci, 9, 2018
1VA7
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BU of 1va7 by Molmil
Yeast Myo3 SH3 domain, triclinic crystal form
Descriptor: GLYCEROL, Myosin-3 isoform
Authors:Kursula, P, Lehmann, F, Song, Y.H, Wilmanns, M.
Deposit date:2004-02-12
Release date:2005-06-14
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (2.9 Å)
Cite:High-throughput structural genomics of yeast SH3 domains
To be Published
8SB5
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BU of 8sb5 by Molmil
CryoEM structure of DH270.I1.6-CH848.10.17
Descriptor: CH848.10.17.SOSIP gp120, CH848.10.17.SOSIP gp41, DH270.I1.6 variable heavy chain, ...
Authors:Henderson, R, Zhou, Y, Stalls, V, Bartesaghi, B, Acharya, P.
Deposit date:2023-04-02
Release date:2023-04-19
Last modified:2024-10-16
Method:ELECTRON MICROSCOPY (3.9 Å)
Cite:Structural basis for breadth development in the HIV-1 V3-glycan targeting DH270 antibody clonal lineage.
Nat Commun, 14, 2023
3E0U
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BU of 3e0u by Molmil
Crystal structure of T. cruzi GPX1
Descriptor: AMMONIUM ION, GLYCEROL, Glutathione peroxidase
Authors:Patel, S.H, Hussain, S, Harris, R, Driscoll, P, Djordjevic, S.
Deposit date:2008-08-01
Release date:2009-08-04
Last modified:2023-08-30
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Structural insights into the catalytic mechanism of Trypanosoma cruzi GPXI (glutathione peroxidase-like enzyme I).
Biochem.J., 425, 2010
5UWN
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BU of 5uwn by Molmil
Matrix metalloproteinase-13 complexed with selective inhibitor compound 10d
Descriptor: CALCIUM ION, Collagenase 3, N-(2-aminoethyl)-4'-(((4-oxo-4,5,6,7-tetrahydro-3H-cyclopenta[d]pyrimidin-2-yl)thio)methyl)-[1,1'-biphenyl]-4-sulfonami de, ...
Authors:Taylor, A.B, Cao, X, Hart, P.J.
Deposit date:2017-02-21
Release date:2017-07-12
Last modified:2023-10-04
Method:X-RAY DIFFRACTION (3.2 Å)
Cite:Structure-Based Design and Synthesis of Potent and Selective Matrix Metalloproteinase 13 Inhibitors.
J. Med. Chem., 60, 2017
4DHM
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BU of 4dhm by Molmil
Small-molecule inhibitors of 14-3-3 protein-protein interactions from virtual screening
Descriptor: 14-3-3 protein sigma, CHLORIDE ION, GLYCEROL, ...
Authors:Thiel, P, Roeglin, L, Kohlbacher, O, Ottmann, C.
Deposit date:2012-01-30
Release date:2013-07-31
Last modified:2024-02-28
Method:X-RAY DIFFRACTION (1.7 Å)
Cite:Virtual screening and experimental validation reveal novel small-molecule inhibitors of 14-3-3 protein-protein interactions.
Chem.Commun.(Camb.), 49, 2013
4DHT
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BU of 4dht by Molmil
Small-molecule inhibitors of 14-3-3 protein-protein interactions from virtual screening
Descriptor: 14-3-3 PROTEIN SIGMA, CHLORIDE ION, GLYCEROL, ...
Authors:Thiel, P, Roeglin, L, Kohlbacher, O, Ottmann, C.
Deposit date:2012-01-30
Release date:2013-07-31
Last modified:2024-02-28
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Virtual screening and experimental validation reveal novel small-molecule inhibitors of 14-3-3 protein-protein interactions.
Chem.Commun.(Camb.), 49, 2013
4DD3
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BU of 4dd3 by Molmil
EVAL processed HEWL, carboplatin aqueous paratone
Descriptor: 2-methylprop-1-ene, CHLORIDE ION, Lysozyme C
Authors:Tanley, S.W, Schreurs, A.M, Kroon-Batenburg, L.M, Meredith, J, Prendergast, R, Walsh, D, Bryant, P, Levy, C, Helliwell, J.R.
Deposit date:2012-01-18
Release date:2012-04-25
Last modified:2023-09-13
Method:X-RAY DIFFRACTION (1.7 Å)
Cite:Structural studies of the effect that dimethyl sulfoxide (DMSO) has on cisplatin and carboplatin binding to histidine in a protein.
Acta Crystallogr.,Sect.D, 68, 2012
1URV
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BU of 1urv by Molmil
Crystal structure of cytoglobin: the fourth globin type discovered in man displays heme hexa-coordination
Descriptor: CYTOGLOBIN, HEXACYANOFERRATE(3-), PROTOPORPHYRIN IX CONTAINING FE
Authors:de Sanctis, D, Dewilde, S, Pesce, A, Moens, L, Ascenzi, P, Hankeln, T, Burmester, T, Bolognesi, M.
Deposit date:2003-11-11
Release date:2004-12-15
Last modified:2024-05-08
Method:X-RAY DIFFRACTION (2 Å)
Cite:Crystal Structure of Cytoglobin: The Fourth Globin Type Discovered in Man Displays Heme Hexa-Coordination.
J.Mol.Biol., 336, 2004
1UST
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BU of 1ust by Molmil
YEAST HISTONE H1 GLOBULAR DOMAIN I, HHO1P GI, SOLUTION NMR STRUCTURES
Descriptor: HISTONE H1
Authors:Ali, T, Coles, P, Stevens, T.J, Stott, K, Thomas, J.O.
Deposit date:2003-11-30
Release date:2004-04-01
Last modified:2024-05-15
Method:SOLUTION NMR
Cite:Two Homologous Domains of Similar Structure But Different Stability in the Yeast Linker Histone, Hho1P
J.Mol.Biol., 338, 2004
8SCD
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BU of 8scd by Molmil
Crystal structure of sulfonamide resistance enzyme Sul3 in complex with reaction intermediate
Descriptor: 2-amino-6-methylidene-6,7-dihydropteridin-4(3H)-one, 4-AMINOBENZOIC ACID, CHLORIDE ION, ...
Authors:Stogios, P.J, Venkatesan, M, Michalska, K, Mesa, N, Di Leo, R, Savchenko, A, Joachimiak, A, Satchell, K.J.F, Center for Structural Biology of Infectious Diseases (CSBID), Center for Structural Genomics of Infectious Diseases (CSGID)
Deposit date:2023-04-05
Release date:2023-05-03
Last modified:2024-05-22
Method:X-RAY DIFFRACTION (2.06 Å)
Cite:Molecular mechanism of plasmid-borne resistance to sulfonamide antibiotics.
Nat Commun, 14, 2023
1UUH
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BU of 1uuh by Molmil
Hyaluronan binding domain of human CD44
Descriptor: CD44 ANTIGEN
Authors:Teriete, P, Banerji, S, Noble, M, Blundell, C, Wright, A, Pickford, A, Lowe, E, Mahoney, D, Tammi, M, Kahmann, J, Campbell, I, Day, A, Jackson, D.
Deposit date:2003-12-19
Release date:2004-03-04
Last modified:2019-05-29
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Structure of the Regulatory Hyaluronan-Binding Domain in the Inflammatory Leukocyte Homing Receptor Cd44
Mol.Cell, 13, 2004
3DP5
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BU of 3dp5 by Molmil
Crystal structure of Geobacter sulfurreducens OmcF with N-terminal Strep-tag II
Descriptor: Cytochrome c family protein, HEME C, SULFATE ION
Authors:Lukat, P, Hoffmann, M, Einsle, O.
Deposit date:2008-07-07
Release date:2008-09-02
Last modified:2019-10-02
Method:X-RAY DIFFRACTION (1.86 Å)
Cite:Crystal packing of the c(6)-type cytochrome OmcF from Geobacter sulfurreducens is mediated by an N-terminal Strep-tag II
ACTA CRYSTALLOGR.,SECT.D, 64, 2008
1UMS
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BU of 1ums by Molmil
STROMELYSIN-1 CATALYTIC DOMAIN WITH HYDROPHOBIC INHIBITOR BOUND, PH 7.0, 32OC, 20 MM CACL2, 15% ACETONITRILE; NMR ENSEMBLE OF 20 STRUCTURES
Descriptor: CALCIUM ION, N-{(2R)-2-[2-(hydroxyamino)-2-oxoethyl]-4-methylpentanoyl}-L-leucyl-L-phenylalaninamide, STROMELYSIN-1, ...
Authors:Van Doren, S.R, Kurochkin, A.V, Hu, W, Zuiderweg, E.R.P.
Deposit date:1995-10-31
Release date:1996-03-08
Last modified:2024-05-01
Method:SOLUTION NMR
Cite:Solution structure of the catalytic domain of human stromelysin complexed with a hydrophobic inhibitor.
Protein Sci., 4, 1995
1USS
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BU of 1uss by Molmil
YEAST HISTONE H1 GLOBULAR DOMAIN II, HHO1P GII, SOLUTION NMR STRUCTURES
Descriptor: HISTONE H1
Authors:Ali, T, Coles, P, Stevens, T.J, Stott, K, Thomas, J.O.
Deposit date:2003-11-30
Release date:2004-04-01
Last modified:2024-05-15
Method:SOLUTION NMR
Cite:Two Homologous Domains of Similar Structure But Different Stability in the Yeast Linker Histone, Hho1P
J.Mol.Biol., 338, 2004
2HP4
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BU of 2hp4 by Molmil
Computational design and crystal structure of an enhanced affinity mutant human CD8-alpha-alpha co-receptor
Descriptor: GLYCEROL, SULFATE ION, T-cell surface glycoprotein CD8 alpha chain
Authors:Rizkallah, P.J, Cole, D.K, Jakobsen, B.K, Boulter, J.M, Glick, M, Gao, G.F.
Deposit date:2006-07-17
Release date:2007-02-06
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Computational design and crystal structure of an enhanced affinity mutant human CD8 alphaalpha coreceptor
Proteins, 67, 2007
4DIQ
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BU of 4diq by Molmil
Crystal Structure of human NO66
Descriptor: Lysine-specific demethylase NO66, NICKEL (II) ION, PYRIDINE-2,4-DICARBOXYLIC ACID, ...
Authors:Vollmar, M, Krojer, T, Ng, S, Pilka, E, Bray, J, Pike, A.C.W, Filippakopoulos, P, Roos, A, Arrowsmith, C.H, Edwards, E, Bountra, C, von Delft, F, Oppermann, U, Structural Genomics Consortium (SGC)
Deposit date:2012-01-31
Release date:2012-03-07
Last modified:2024-05-22
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:Crystal Structure of human NO66
TO BE PUBLISHED
2HPB
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BU of 2hpb by Molmil
Crystal structure of the OXA-10 W154A mutant at pH 9.0
Descriptor: Beta-lactamase PSE-2, SULFATE ION
Authors:Kerff, F, Falzone, C, Herman, R, Sauvage, E, Charlier, P.
Deposit date:2006-07-17
Release date:2007-07-03
Last modified:2024-10-09
Method:X-RAY DIFFRACTION (2.05 Å)
Cite:Critical role of tryptophan 154 for the activity and stability of class D beta-lactamases.
Biochemistry, 48, 2009
1UWM
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BU of 1uwm by Molmil
reduced ferredoxin 6 from Rhodobacter capsulatus
Descriptor: FE2/S2 (INORGANIC) CLUSTER, FERREDOXIN VI
Authors:Sainz, G, Jakoncic, J, Sieker, L.C, Stojanoff, V, Sanishvili, N, Asso, M, Bertrand, P, Armengaud, J, Jouanneau, Y.
Deposit date:2004-02-05
Release date:2006-01-18
Last modified:2023-12-13
Method:X-RAY DIFFRACTION (2 Å)
Cite:Structure of a [2Fe-2S] Ferredoxin from Rhodobacter Capsulatus Likely Involved in Fe-S Cluster Biogenesis and Conformational Changes Observed Upon Reduction.
J.Biol.Inorg.Chem., 11, 2006

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