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PDB: 46375 results

4RVJ
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Crystal structure of multidrug-resistant clinical isolate A02 HIV-1 protease in complex with amprenavir
Descriptor: HIV-1 protease, {3-[(4-AMINO-BENZENESULFONYL)-ISOBUTYL-AMINO]-1-BENZYL-2-HYDROXY-PROPYL}-CARBAMIC ACID TETRAHYDRO-FURAN-3-YL ESTER
Authors:Yedidi, R.S, Garimella, H, Kaufman, J.D, Das, D, Wingfield, P.T, Mitsuya, H.
Deposit date:2014-11-26
Release date:2016-05-04
Last modified:2024-02-28
Method:X-RAY DIFFRACTION (1.6 Å)
Cite:Enhanced antiviral activity by the P2-tris-tetrahydrofuran moiety of GRL-0519, a novel nonpeptidic HIV-1 protease inhibitor (PI), against multi-PI-resistant and highly darunavir-resistant strains of HIV-1
To be Published
1NAV
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Thyroid Receptor Alpha in complex with an agonist selective for Thyroid Receptor Beta1
Descriptor: SULFATE ION, hormone receptor alpha 1, THRA1, ...
Authors:Ye, L, Li, Y.L, Mellstrom, K, Mellin, C, Bladh, L.G, Koehler, K, Garg, N, Garcia Collazo, A.M, Litten, C, Husman, B, Persson, K, Ljunggren, J, Grover, G, Sleph, P.G, George, R, Malm, J.
Deposit date:2002-11-29
Release date:2003-06-17
Last modified:2024-02-14
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:Thyroid receptor ligands. 1. Agonist ligands selective for the thyroid receptor beta1.
J.Med.Chem., 46, 2003
1NGW
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Chimeric Affinity Matured Fab 7g12 complexed with mesoporphyrin
Descriptor: Mature Metal Chelatase Catalytic Antibody, Heavy chain, Light chain, ...
Authors:Yin, J, Andryski, S.E, Beuscher IV, A.E, Stevens, R.C, Schultz, P.G.
Deposit date:2002-12-18
Release date:2003-02-04
Last modified:2018-01-31
Method:X-RAY DIFFRACTION (2.6 Å)
Cite:Structural evidence for substrate strain in antibody catalysis
Proc.Natl.Acad.Sci.USA, 100, 2003
1NDD
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STRUCTURE OF NEDD8
Descriptor: CHLORIDE ION, PROTEIN (UBIQUITIN-LIKE PROTEIN NEDD8), SULFATE ION
Authors:Whitby, F.G, Xia, G, Pickart, C.M, Hill, C.P.
Deposit date:1998-08-21
Release date:1999-02-23
Last modified:2023-08-16
Method:X-RAY DIFFRACTION (1.6 Å)
Cite:Crystal structure of the human ubiquitin-like protein NEDD8 and interactions with ubiquitin pathway enzymes.
J.Biol.Chem., 273, 1998
1NIL
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A COMPARISON OF NMR SOLUTION STRUCTURES OF THE RECEPTOR BINDING DOMAINS OF PSEUDOMONAS AERUGINOSA PILI STRAINS PAO, KB7, AND PAK: IMPLICATIONS FOR RECEPTOR BINDING AND SYNTHETIC VACCINE DESIGN
Descriptor: PAK PILIN, TRANS
Authors:Campbell, A.P, Mcinnes, C, Hodges, R.S, Sykes, B.D.
Deposit date:1995-10-05
Release date:1996-01-29
Last modified:2017-11-29
Method:SOLUTION NMR
Cite:Comparison of NMR solution structures of the receptor binding domains of Pseudomonas aeruginosa pili strains PAO, KB7, and PAK: implications for receptor binding and synthetic vaccine design.
Biochemistry, 34, 1995
1NH1
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Crystal Structure of the Type III Effector AvrB from Pseudomonas syringae.
Descriptor: Avirulence B protein
Authors:Lee, C.C, Wood, M.D, Ng, K, Luginbuhl, P, Spraggon, G, Katagiri, F.
Deposit date:2002-12-18
Release date:2004-03-09
Last modified:2024-02-14
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Crystal Structure of the Type III Effector AvrB from Pseudomonas syringae.
Structure, 12, 2004
4TXY
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Crystal structure of Vibrio cholerae DncV cyclic AMP-GMP synthase, a prokaryotic cGAS homolog
Descriptor: Cyclic AMP-GMP synthase, MAGNESIUM ION
Authors:Kranzusch, P.J, Lee, A.S.Y, Wilson, S.C, Solovykh, M.S, Vance, R.E, Berger, J.M, Doudna, J.A.
Deposit date:2014-07-07
Release date:2014-08-13
Last modified:2023-12-27
Method:X-RAY DIFFRACTION (3.0001 Å)
Cite:Structure-Guided Reprogramming of Human cGAS Dinucleotide Linkage Specificity.
Cell, 158, 2014
4TYS
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Crystal structure of Canavalia maritima lectin (ConM) complexed with a dinucleotide
Descriptor: Concanavalin-A, bis{[(2R,3S,5R)-5-(6-amino-9H-purin-9-yl)-3-hydroxytetrahydrofuran-2-yl]methyl} hydrogen phosphate
Authors:Vieira, D.B.H.A, Delatorre, P, Silva-Filho, J.C, Nobrega, R.B, Cavada, B.S, Rocha, B.A.M, Lima, E.M, Teixeira, C.S.
Deposit date:2014-07-09
Release date:2015-07-22
Last modified:2023-12-27
Method:X-RAY DIFFRACTION (3.25 Å)
Cite:Crystal structure of Canavalia maritima lectin (ConM) complexed with a dinucleotide
To Be Published
1NLB
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crystal structure of anti-HCV monoclonal antibody 19D9D6
Descriptor: antibody 19D9D6 heavy chain, antibody 19D9D6 light chain
Authors:Menez, R, Bossus, M, Muller, B, Sibai, G, Dalbon, P, Ducancel, F, Jolivet-Reynaud, C, Stura, E.
Deposit date:2003-01-07
Release date:2003-02-25
Last modified:2023-08-16
Method:X-RAY DIFFRACTION (1.6 Å)
Cite:Crystal structure of a hydrophobic immunodominant antigenic site on hepatitis C virus core protein complexed to monoclonal antibody 19D9D6.
J.Immunol., 170, 2003
1N84
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HUMAN SERUM TRANSFERRIN, N-LOBE
Descriptor: CARBONATE ION, FE (III) ION, Serotransferrin
Authors:Adams, T.E, Mason, A.B, He, Q.Y, Halbrooks, P.J, Briggs, S.K, Smith, V.C, Macgillivray, R.T, Everse, S.J.
Deposit date:2002-11-19
Release date:2003-03-18
Last modified:2023-08-16
Method:X-RAY DIFFRACTION (2.05 Å)
Cite:THE POSITION OF ARGININE 124 CONTROLS THE RATE OF IRON RELEASE FROM THE N-LOBE OF HUMAN SERUM TRANSFERRIN. A STRUCTURAL STUDY
J.Biol.Chem., 278, 2003
1N9S
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Crystal structure of yeast SmF in spacegroup P43212
Descriptor: Small nuclear ribonucleoprotein F
Authors:Collins, B.M, Cubeddu, L, Naidoo, N, Harrop, S.J, Kornfeld, G.D, Dawes, I.W, Curmi, P.M.G, Mabbutt, B.C.
Deposit date:2002-11-26
Release date:2002-12-13
Last modified:2023-08-16
Method:X-RAY DIFFRACTION (3.5 Å)
Cite:Homomeric ring assemblies of eukaryotic Sm proteins have affinity for both RNA and DNA: Crystal structure of an oligomeric complex of yeast SmF
J.Biol.Chem., 278, 2003
1NB8
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Structure of the catalytic domain of USP7 (HAUSP)
Descriptor: Ubiquitin carboxyl-terminal hydrolase 7
Authors:Hu, M, Li, P, Li, M, Li, W, Yao, T, Wu, J.-W, Gu, W, Cohen, R.E, Shi, Y.
Deposit date:2002-12-02
Release date:2003-01-07
Last modified:2024-10-16
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Crystal structure of a UBP-family deubiquitinating enzyme in isolation and in complex with ubiquitin aldehyde
Cell(Cambridge,Mass.), 111, 2002
1NC9
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STREPTAVIDIN MUTANT Y43A WITH IMINOBIOTIN AT 1.8A RESOLUTION
Descriptor: 2-IMINOBIOTIN, Streptavidin
Authors:Le Trong, I, Freitag, S, Klumb, L.A, Chu, V, Stayton, P.S, Stenkamp, R.E.
Deposit date:2002-12-05
Release date:2003-09-02
Last modified:2023-08-16
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Structural studies of hydrogen bonds in the high-affinity streptavidin-biotin complex: mutations of amino acids interacting with the ureido oxygen of biotin.
Acta Crystallogr.,Sect.D, 59, 2003
1NE9
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Crystal Structure of Weissella viridescens FemX at 1.7 Ang Resolution
Descriptor: FemX, MAGNESIUM ION
Authors:Biarrotte-Sorin, S, Maillard, A.P, Delettre, J, Sougakoff, W, Arthur, M, Mayer, C.
Deposit date:2002-12-11
Release date:2004-02-10
Last modified:2024-02-14
Method:X-RAY DIFFRACTION (1.7 Å)
Cite:Crystal structures of Weissella viridescens FemX and its complex with UDP-MurNAc-pentapeptide: insights into FemABX family substrates recognition.
Structure, 12, 2004
1NKX
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CRYSTAL STRUCTURE OF A PROTEOLYTICALLY GENERATED FUNCTIONAL MONOFERRIC C-LOBE OF BOVINE LACTOFERRIN AT 1.9A RESOLUTION
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, CARBONATE ION, FE (III) ION, ...
Authors:Sharma, S, Jasti, J, Kumar, J, Mohanty, A.K, Singh, T.P.
Deposit date:2003-01-06
Release date:2003-09-02
Last modified:2023-08-16
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Crystal Structure of a Proteolytically Generated Functional Monoferric C-lobe of Bovine Lactoferrin at 1.9A Resolution
J.Mol.Biol., 331, 2003
1NK1
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NK1 FRAGMENT OF HUMAN HEPATOCYTE GROWTH FACTOR/SCATTER FACTOR (HGF/SF) AT 2.5 ANGSTROM RESOLUTION
Descriptor: PROTEIN (HEPATOCYTE GROWTH FACTOR PRECURSOR)
Authors:Chirgadze, D.Y, Hepple, J.P, Zhou, H, Byrd, R.A, Blundell, T.L, Gherardi, E.
Deposit date:1998-08-20
Release date:1999-01-13
Last modified:2023-08-16
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:Crystal structure of the NK1 fragment of HGF/SF suggests a novel mode for growth factor dimerization and receptor binding.
Nat.Struct.Biol., 6, 1999
1NL7
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Z. ramigera biosynthetic thiolase, acetylated enzyme complexed with CoA at pH 9.5
Descriptor: Acetyl-CoA acetyltransferase, COENZYME A, SULFATE ION
Authors:Kursula, P, Wierenga, R.K.
Deposit date:2003-01-06
Release date:2004-04-06
Last modified:2023-08-16
Method:X-RAY DIFFRACTION (1.903 Å)
Cite:Crystal structures of Z. ramigera biosynthetic thiolase
To be Published
4TUU
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Isolated p110a subunit of PI3Ka provides a platform for structure-based drug design
Descriptor: Phosphatidylinositol 4,5-bisphosphate 3-kinase catalytic subunit alpha isoform
Authors:Chen, P, Deng, Y.-L, Bergqvist, S, Falk, M, Liu, W, Timofeevski, S.
Deposit date:2014-06-24
Release date:2014-08-06
Last modified:2023-12-27
Method:X-RAY DIFFRACTION (2.64 Å)
Cite:Engineering of an isolated p110 alpha subunit of PI3K alpha permits crystallization and provides a platform for structure-based drug design.
Protein Sci., 23, 2014
4TVW
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Resorufin ligase with bound resorufin-AMP analog
Descriptor: 5'-O-{[5-(7-hydroxy-3-oxo-3H-phenoxazin-2-yl)pentanoyl]sulfamoyl}adenosine, Lipoate-protein ligase A
Authors:Goldman, P.J, Drennan, C.L.
Deposit date:2014-06-28
Release date:2014-10-22
Last modified:2023-12-27
Method:X-RAY DIFFRACTION (3.505 Å)
Cite:Computational design of a red fluorophore ligase for site-specific protein labeling in living cells.
Proc.Natl.Acad.Sci.USA, 111, 2014
1NAL
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BU of 1nal by Molmil
THE THREE-DIMENSIONAL STRUCTURE OF N-ACETYLNEURAMINATE LYASE FROM ESCHERICHIA COLI
Descriptor: N-ACETYLNEURAMINATE LYASE, SULFATE ION
Authors:Izard, T, Lawrence, M.C, Malby, R.L, Lilley, G.G, Colman, P.M.
Deposit date:1994-02-28
Release date:1995-09-15
Last modified:2024-02-14
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:The three-dimensional structure of N-acetylneuraminate lyase from Escherichia coli.
Structure, 2, 1994
1NDJ
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Streptavidin Mutant Y43F with Biotin at 1.81A Resolution
Descriptor: BIOTIN, Streptavidin
Authors:Le Trong, I, Freitag, S, Klumb, L.A, Chu, V, Stayton, P.S, Stenkamp, R.E.
Deposit date:2002-12-09
Release date:2003-09-02
Last modified:2023-08-16
Method:X-RAY DIFFRACTION (1.81 Å)
Cite:Structural studies of hydrogen bonds in the high-affinity streptavidin-biotin complex: mutations of amino acids interacting with the ureido oxygen of biotin.
Acta Crystallogr.,Sect.D, 59, 2003
1NBF
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Crystal structure of a UBP-family deubiquitinating enzyme in isolation and in complex with ubiquitin aldehyde
Descriptor: Ubiquitin aldehyde, Ubiquitin carboxyl-terminal hydrolase 7
Authors:Hu, M, Li, P, Li, M, Li, W, Yao, T, Wu, J.-W, Gu, W, Cohen, R.E, Shi, Y.
Deposit date:2002-12-02
Release date:2003-01-07
Last modified:2018-10-03
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Crystal structure of a UBP-family deubiquitinating enzyme in isolation and in complex with ubiquitin aldehyde
Cell(Cambridge,Mass.), 111, 2002
1NIM
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A COMPARISON OF NMR SOLUTION STRUCTURES OF THE RECEPTOR BINDING DOMAINS OF PSEUDOMONAS AERUGINOSA PILI STRAINS PAO, KB7, AND PAK: IMPLICATIONS FOR RECEPTOR BINDING AND SYNTHETIC VACCINE DESIGN
Descriptor: PAK PILIN, TRANS
Authors:Campbell, A.P, Mcinnes, C, Hodges, R.S, Sykes, B.D.
Deposit date:1995-10-05
Release date:1996-01-29
Last modified:2017-11-29
Method:SOLUTION NMR
Cite:Comparison of NMR solution structures of the receptor binding domains of Pseudomonas aeruginosa pili strains PAO, KB7, and PAK: implications for receptor binding and synthetic vaccine design.
Biochemistry, 34, 1995
1NGZ
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Chimeric Germline Fab 7g12-apo
Descriptor: Germline Metal Chelatase Catalytic Antibody, Heavy chain, Light chain
Authors:Yin, J, Andryski, S.A, Beuscher, A.B, Stevens, R.C, Schultz, P.G.
Deposit date:2002-12-18
Release date:2003-02-04
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.6 Å)
Cite:Structural evidence for substrate strain in antibody catalysis
Proc.Natl.Acad.Sci.USA, 100, 2003
1NI0
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Structure of the Y94F mutant of the restriction endonuclease PvuII
Descriptor: Type II restriction enzyme PvuII
Authors:Tucker, P.A, Kokkinidis, M, Nicolaki, S, Kotsifaki, D.
Deposit date:2002-12-20
Release date:2003-02-04
Last modified:2023-08-16
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:Structure of the Y94F mutant of the restriction endonuclease PvuII
To be Published

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