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PDB: 46375 results

8TOP
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BU of 8top by Molmil
Cryo-EM structure of HIV-1 Env BG505 DS-SOSIP in complex with antibody GPZ6-b.01 targeting the fusion peptide
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, HIV-1 BG505 DS-SOSIP glycoprotein gp41, ...
Authors:Zhou, T, Morano, N.C, Roark, R.S, Kwong, P.D.
Deposit date:2023-08-03
Release date:2024-08-07
Method:ELECTRON MICROSCOPY (3.52 Å)
Cite:Cryo-EM structure of HIV-1 Env BG505 DS-SOSIP in complex with antibody GPZ6-b.01 targeting the fusion peptide
To Be Published
3ONJ
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BU of 3onj by Molmil
Crystal structure of yeast Vti1p_Habc domain
Descriptor: t-SNARE VTI1
Authors:Wang, J, Fang, P, Niu, L, Teng, M.
Deposit date:2010-08-29
Release date:2011-07-20
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (1.92 Å)
Cite:Epsin N-terminal homology domains bind on opposite sides of two SNAREs
Proc.Natl.Acad.Sci.USA, 108, 2011
5MVC
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BU of 5mvc by Molmil
Crystal structure of potent human Dihydroorotate Dehydrogenase inhibitors based on hydroxylated azole scaffolds
Descriptor: 4-oxidanyl-~{N}-[2,3,5,6-tetrakis(fluoranyl)-4-phenyl-phenyl]-1,2,5-thiadiazole-3-carboxamide, ACETATE ION, CHLORIDE ION, ...
Authors:Goyal, P, Andersson, M, Moritzer, A.C, Sainas, S, Pippione, A.C, Boschi, D, Al-Kadaraghi, S, Lolli, M, Friemann, R.
Deposit date:2017-01-16
Release date:2017-03-08
Last modified:2024-01-17
Method:X-RAY DIFFRACTION (1.85 Å)
Cite:Design, synthesis, biological evaluation and X-ray structural studies of potent human dihydroorotate dehydrogenase inhibitors based on hydroxylated azole scaffolds.
Eur J Med Chem, 129, 2017
2W4B
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BU of 2w4b by Molmil
Epstein-Barr virus alkaline nuclease D203S mutant
Descriptor: ALKALINE EXONUCLEASE
Authors:Buisson, M, Geoui, T, Flot, D, Tarbouriech, N, Burmeister, W.P.
Deposit date:2008-11-24
Release date:2009-06-30
Last modified:2023-12-13
Method:X-RAY DIFFRACTION (3.5 Å)
Cite:A Bridge Crosses the Active Site Canyon of the Epstein-Barr Virus Nuclease with DNase and Rnase Activity.
J.Mol.Biol., 391, 2009
8TO7
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BU of 8to7 by Molmil
Cryo-EM structure of HERH-b*01 Fab in complex with HIV-1 Env trimer BG505.DS SOSIP
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, HERH-b*01 heavy chain, ...
Authors:Roark, R.S, Hoyt, F, Hansen, B, Fischer, E, Shapiro, L.S, Kwong, P.D.
Deposit date:2023-08-03
Release date:2024-08-07
Method:ELECTRON MICROSCOPY (3.39 Å)
Cite:Broad and potent HIV-1 neutralization in fusion peptide-primed SHIV-boosted macaques
To Be Published
3P5N
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BU of 3p5n by Molmil
Structure and mechanism of the S component of a bacterial ECF transporter
Descriptor: RIBOFLAVIN, Riboflavin uptake protein
Authors:Zhang, P, Wang, J, Shi, Y.
Deposit date:2010-10-09
Release date:2010-11-03
Last modified:2024-03-20
Method:X-RAY DIFFRACTION (3.6 Å)
Cite:Structure and mechanism of the S component of a bacterial ECF transporter
Nature, 468, 2010
8TO9
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BU of 8to9 by Molmil
Cryo-EM structure of TRNM-f*01 Fab in complex with HIV-1 Env trimer ConC SOSIP
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, Envelope glycoprotein gp120, ...
Authors:Roark, R.S, Morano, N.C, Shapiro, L.S, Kwong, P.D.
Deposit date:2023-08-03
Release date:2024-08-07
Method:ELECTRON MICROSCOPY (4.03 Å)
Cite:Broad and potent HIV-1 neutralization in fusion peptide-primed SHIV-boosted macaques
To Be Published
2W1I
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BU of 2w1i by Molmil
Structure determination of Aurora Kinase in complex with inhibitor
Descriptor: 4-[(2-{4-[(CYCLOPROPYLCARBAMOYL)AMINO]-1H-PYRAZOL-3-YL}-1H-BENZIMIDAZOL-6-YL)METHYL]MORPHOLIN-4-IUM, JAK2
Authors:Howard, S, Berdini, V, Boulstridge, J.A, Carr, M.G, Cross, D.M, Curry, J, Devine, L.A, Early, T.R, Fazal, L, Gill, A.L, Heathcote, M, Maman, S, Matthews, J.E, McMenamin, R.L, Navarro, E.F, O'Brien, M.A, O'Reilly, M, Rees, D.C, Reule, M, Tisi, D, Williams, G, Vinkovic, M, Wyatt, P.G.
Deposit date:2008-10-17
Release date:2009-01-27
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.6 Å)
Cite:Fragment-Based Discovery of the Pyrazol-4-Yl Urea (at9283), a Multitargeted Kinase Inhibitor with Potent Aurora Kinase Activity.
J.Med.Chem., 52, 2009
7XLY
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BU of 7xly by Molmil
Crystal structure of FadA2 (Rv0243) from the fatty acid metabolic pathway of Mycobacterium tuberculosis
Descriptor: Probable acetyl-CoA acyltransferase FadA2 (3-ketoacyl-CoA thiolase) (Beta-ketothiolase), SULFATE ION
Authors:Singh, R, Kundu, P, Singh, B.K, Bhattacharyya, S, Das, A.K.
Deposit date:2022-04-23
Release date:2023-04-26
Last modified:2023-08-30
Method:X-RAY DIFFRACTION (2.9 Å)
Cite:Crystal structure of FadA2 thiolase from Mycobacterium tuberculosis and prediction of its substrate specificity and membrane-anchoring properties.
Febs J., 290, 2023
2W7W
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BU of 2w7w by Molmil
The crystal structure of iron superoxide dismutase from Aliivibrio salmonicida.
Descriptor: FE (III) ION, SUPEROXIDE DISMUTASE [FE]
Authors:Pedersen, H.L, Willassen, N.P, Leiros, I.
Deposit date:2009-01-06
Release date:2009-02-17
Last modified:2023-12-13
Method:X-RAY DIFFRACTION (1.7 Å)
Cite:The first structure of a cold-adapted superoxide dismutase (SOD): biochemical and structural characterization of iron SOD from Aliivibrio salmonicida.
Acta Crystallogr. Sect. F Struct. Biol. Cryst. Commun., 65, 2009
2WA7
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BU of 2wa7 by Molmil
Structure of the M202V mutant of human filamin b actin binding domain at 1.85 Angstrom resolution
Descriptor: CACODYLATE ION, CARBONATE ION, FILAMIN-B
Authors:Sawyer, G.M, Clark, A.R, Robertson, S.P, Sutherland-Smith, A.J.
Deposit date:2009-02-03
Release date:2009-06-23
Last modified:2023-12-13
Method:X-RAY DIFFRACTION (1.85 Å)
Cite:Disease-Associated Substitutions in the Filamin B Actin Binding Domain Confer Enhanced Actin Binding Affinity in the Absence of Major Structural Disturbance: Insights from the Crystal Structures of Filamin B Actin Binding Domains.
J.Mol.Biol., 390, 2009
8TK4
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BU of 8tk4 by Molmil
HUMAN VH1-RELATED DUAL-SPECIFICITY PHOSPHATASE (VHR) complexed with phosphate
Descriptor: Dual specificity protein phosphatase 3, PHOSPHATE ION
Authors:Aleshin, A.E, Wu, J, Lambert, L.J, Cosford, N.D.P, Tautz, L.
Deposit date:2023-07-25
Release date:2024-08-14
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:HUMAN VH1-RELATED DUAL-SPECIFICITY PHOSPHATASE (VHR) complexed with phosphate
To Be Published
3P9C
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BU of 3p9c by Molmil
Crystal structure of perennial ryegrass LpOMT1 bound to SAH
Descriptor: (2S,3S)-1,4-DIMERCAPTOBUTANE-2,3-DIOL, 1,2-ETHANEDIOL, ACETATE ION, ...
Authors:Louie, G.V, Noel, J.P, Bowman, M.E.
Deposit date:2010-10-17
Release date:2011-01-12
Last modified:2023-09-06
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Structure-Function Analyses of a Caffeic Acid O-Methyltransferase from Perennial Ryegrass Reveal the Molecular Basis for Substrate Preference.
Plant Cell, 22, 2010
8TOX
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BU of 8tox by Molmil
Cryo-EM structure of BG505 Env mutant A517E in complex with antibody ACS202 Fab
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, Envelope glycoprotein gp120, ...
Authors:Wang, S, Kwong, P.D.
Deposit date:2023-08-04
Release date:2024-08-14
Method:ELECTRON MICROSCOPY (2.3 Å)
Cite:Cryo-EM structure of BG505 Env mutant A517E in complex with antibody ACS202 Fab
To Be Published
2WAS
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BU of 2was by Molmil
Structure of the fungal type I FAS PPT domain
Descriptor: 3-OXOACYL-[ACYL-CARRIER-PROTEIN] SYNTHASE
Authors:Johansson, P, Mulincacci, B, Koestler, C, Grininger, M.
Deposit date:2009-02-15
Release date:2009-08-25
Last modified:2024-05-08
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Multimeric Options for the Auto-Activation of the Saccharomyces Cerevisiae Fas Type I Megasynthase.
Structure, 17, 2009
8TGW
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BU of 8tgw by Molmil
Cryo-EM structure of 1059 SOSIP trimer purified via Galanthus nivalis lectin chromatography
Descriptor: 1059 SOSIP Surface protein gp120, 1059 SOSIP Transmembrane protein gp41, 2-acetamido-2-deoxy-beta-D-glucopyranose, ...
Authors:Parsons, R.J, Pothula, K, Acharya, P.
Deposit date:2023-07-13
Release date:2024-08-28
Last modified:2024-10-09
Method:ELECTRON MICROSCOPY (3.6 Å)
Cite:Conformational flexibility of HIV-1 envelope glycoproteins modulates transmitted/founder sensitivity to broadly neutralizing antibodies.
Nat Commun, 15, 2024
2WFW
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BU of 2wfw by Molmil
Structure and activity of the N-terminal substrate recognition domains in proteasomal ATPases - The Arc domain structure
Descriptor: ARC
Authors:Djuranovic, S, Hartmann, M.D, Habeck, M, Ursinus, A, Zwickl, P, Martin, J, Lupas, A.N, Zeth, K.
Deposit date:2009-04-15
Release date:2009-05-12
Last modified:2024-05-08
Method:X-RAY DIFFRACTION (1.6 Å)
Cite:Structure and Activity of the N-Terminal Substrate Recognition Domains in Proteasomal Atpases.
Mol.Cell, 34, 2009
3OHW
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BU of 3ohw by Molmil
X-Ray Structure of Phycobilisome LCM core-membrane linker polypeptide (fragment 721-860) from Synechocystis sp. PCC 6803, Northeast Structural Genomics Consortium Target SgR209E
Descriptor: Phycobilisome LCM core-membrane linker polypeptide
Authors:Kuzin, A, Su, M, Lew, S, Vorobiev, S.M, Patel, P, Xiao, R, Ciccosanti, C, Lee, D, Everett, J.K, Nair, R, Acton, T.B, Rost, B, Montelione, G.T, Hunt, J.F, Tong, L, Northeast Structural Genomics Consortium (NESG)
Deposit date:2010-08-18
Release date:2010-09-01
Last modified:2024-10-16
Method:X-RAY DIFFRACTION (2.7 Å)
Cite:Northeast Structural Genomics Consortium Target SgR209E
To be Published
5JR8
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BU of 5jr8 by Molmil
Disposal of Iron by a Mutant form of Siderocalin NGAL
Descriptor: GLYCEROL, Neutrophil gelatinase-associated lipocalin, PHOSPHATE ION
Authors:Rupert, P.B, Strong, R.K, Barasch, J, Hollman, M, Deng, R, Hod, E.A, Abergel, R, Allred, B, Xu, K, Darrah, S, Tekabe, Y, Perlstein, A, Bruck, E, Stauber, J, Corbin, K, Buchen, C, Slavkovich, V, Graziano, J, Spitalnik, S, Qiu, A.
Deposit date:2016-05-05
Release date:2016-09-28
Last modified:2023-09-27
Method:X-RAY DIFFRACTION (2.65 Å)
Cite:Disposal of iron by a mutant form of lipocalin 2.
Nat Commun, 7, 2016
8TGU
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BU of 8tgu by Molmil
Cryo-EM structure of BG505 SOSIP trimer purified via Galanthus nivalis lectin chromatography
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, HIV-1 Envelope glycoprotein BG505 SOSIP, ...
Authors:Parsons, R.J, Pothula, K, Acharya, P.
Deposit date:2023-07-13
Release date:2024-08-28
Last modified:2024-09-04
Method:ELECTRON MICROSCOPY (3.8 Å)
Cite:Conformational flexibility of HIV-1 envelope glycoproteins modulates transmitted/founder sensitivity to broadly neutralizing antibodies.
Nat Commun, 15, 2024
6SZ8
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BU of 6sz8 by Molmil
Crystal structure of YTHDC1 with fragment 6 (DHU_DC1_034)
Descriptor: 6-pyrrolidin-1-yl-5~{H}-pyrimidine-2,4-dione, SULFATE ION, YTH domain-containing protein 1
Authors:Bedi, R.K, Huang, D, Sledz, P, Caflisch, A.
Deposit date:2019-10-02
Release date:2020-03-04
Last modified:2024-01-24
Method:X-RAY DIFFRACTION (1.47 Å)
Cite:Selectively Disrupting m6A-Dependent Protein-RNA Interactions with Fragments.
Acs Chem.Biol., 15, 2020
2VQX
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BU of 2vqx by Molmil
Precursor of Protealysin, Metalloproteinase from Serratia proteamaculans.
Descriptor: METALLOPROTEINASE, ZINC ION
Authors:Melik-Adamyan, W.R, Kuranova, I.P, Polyakov, K.M, Demidyuk, I.V, Gromova, T.Y, Kostrov, S.V.
Deposit date:2008-03-20
Release date:2009-05-26
Last modified:2023-12-13
Method:X-RAY DIFFRACTION (1.821 Å)
Cite:Crystal Structure of the Protealysin Precursor: Insights Into Propeptide Function.
J.Biol.Chem., 285, 2010
6SZN
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BU of 6szn by Molmil
Crystal structure of YTHDC1 with fragment 8 (DHU_DC1_006)
Descriptor: N-carbamoylbenzamide, SULFATE ION, YTH domain-containing protein 1
Authors:Bedi, R.K, Huang, D, Sledz, P, Caflisch, A.
Deposit date:2019-10-02
Release date:2020-03-04
Last modified:2024-01-24
Method:X-RAY DIFFRACTION (1.47 Å)
Cite:Selectively Disrupting m6A-Dependent Protein-RNA Interactions with Fragments.
Acs Chem.Biol., 15, 2020
6WVT
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BU of 6wvt by Molmil
Structural basis of alphaE-catenin - F-actin catch bond behavior
Descriptor: ADENOSINE-5'-DIPHOSPHATE, Actin, alpha skeletal muscle, ...
Authors:Xu, X.P, Pokutta, S, Torres, M, Swift, M.F, Hanein, D, Volkmann, N, Weis, W.I.
Deposit date:2020-05-06
Release date:2020-10-07
Method:ELECTRON MICROSCOPY (3.56 Å)
Cite:Structural basis of alpha E-catenin-F-actin catch bond behavior.
Elife, 9, 2020
3OMU
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BU of 3omu by Molmil
Crystal Structure of the N-terminal domain of an HSP90 from Trypanosoma Brucei, Tb10.26.1080 in the presence of a thienopyrimidine derivative
Descriptor: 2-amino-4-{2,4-dichloro-5-[2-(diethylamino)ethoxy]phenyl}-N-ethylthieno[2,3-d]pyrimidine-6-carboxamide, Heat shock protein 83
Authors:Wernimont, A.K, Hutchinson, A, Sullivan, H, Weadge, J, Cossar, D, Li, Y, Kozieradzki, I, Bochkarev, A, Arrowsmith, C.H, Edwards, A.M, Bountra, C, Weigelt, J, Wyatt, P.G, Fairlamb, A.H, MacKenzie, C, Ferguson, M.A.J, Hui, R, Pizarro, J.C, Hills, T, Structural Genomics Consortium (SGC)
Deposit date:2010-08-27
Release date:2010-10-27
Last modified:2024-10-16
Method:X-RAY DIFFRACTION (2.15 Å)
Cite:Exploring the Trypanosoma brucei Hsp83 potential as a target for structure guided drug design.
PLoS Negl Trop Dis, 7, 2013

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