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PDB: 45697 results

1PHS
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BU of 1phs by Molmil
THE THREE-DIMENSIONAL STRUCTURE OF THE SEED STORAGE PROTEIN PHASEOLIN AT 3 ANGSTROMS RESOLUTION
Descriptor: PHASEOLIN, BETA-TYPE PRECURSOR
Authors:Lawrence, M.C, Suzuki, E, Varghese, J.N, Davis, P.C, Vandonkelaar, A, Tulloch, P.A, Colman, P.M.
Deposit date:1990-03-21
Release date:1990-10-15
Last modified:2023-09-27
Method:X-RAY DIFFRACTION (3 Å)
Cite:The three-dimensional structure of the seed storage protein phaseolin at 3 A resolution.
EMBO J., 9, 1990
8PQY
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BU of 8pqy by Molmil
Cytoplasmic dynein-1 motor domain bound to LIS1
Descriptor: ADENOSINE-5'-DIPHOSPHATE, ADENOSINE-5'-TRIPHOSPHATE, Cytoplasmic dynein 1 heavy chain 1, ...
Authors:Singh, K, Lau, C.K, Manigrasso, G, Gassmann, R, Carter, A.P.
Deposit date:2023-07-12
Release date:2024-03-27
Last modified:2024-04-10
Method:ELECTRON MICROSCOPY (3.8 Å)
Cite:Molecular mechanism of dynein-dynactin complex assembly by LIS1.
Science, 383, 2024
8PR3
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BU of 8pr3 by Molmil
Cytoplasmic dynein-1 heavy chain bound to JIP3-RH1
Descriptor: C-Jun-amino-terminal kinase-interacting protein 3, Cytoplasmic dynein 1 heavy chain 1, Cytoplasmic dynein 1 intermediate chain 2, ...
Authors:Singh, K, Lau, C.K, Manigrasso, G, Gassmann, R, Carter, A.P.
Deposit date:2023-07-12
Release date:2024-03-27
Last modified:2024-04-10
Method:ELECTRON MICROSCOPY (3.9 Å)
Cite:Molecular mechanism of dynein-dynactin complex assembly by LIS1.
Science, 383, 2024
5VAJ
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BU of 5vaj by Molmil
BhRNase H - amide-RNA/DNA complex
Descriptor: ACETATE ION, DNA (5'-D(*GP*AP*AP*TP*CP*AP*GP*GP*TP*GP*TP*C)-3'), GLYCEROL, ...
Authors:Pallan, P.S, Egli, M.
Deposit date:2017-03-27
Release date:2017-09-13
Last modified:2023-10-04
Method:X-RAY DIFFRACTION (1.95 Å)
Cite:Amide linkages mimic phosphates in RNA interactions with proteins and are well tolerated in the guide strand of short interfering RNAs.
Nucleic Acids Res., 45, 2017
8PR2
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BU of 8pr2 by Molmil
Cytoplasmic dynein-1 heavy chain bound to JIP3-LZI
Descriptor: C-Jun-amino-terminal kinase-interacting protein 3, Cytoplasmic dynein 1 heavy chain 1, Cytoplasmic dynein 1 intermediate chain 2, ...
Authors:Singh, K, Lau, C.K, Manigrasso, G, Gassmann, R, Carter, A.P.
Deposit date:2023-07-12
Release date:2024-03-27
Last modified:2024-04-10
Method:ELECTRON MICROSCOPY (3.8 Å)
Cite:Molecular mechanism of dynein-dynactin complex assembly by LIS1.
Science, 383, 2024
8PQW
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BU of 8pqw by Molmil
Cytoplasmic dynein-1 motor domain bound to dynactin-p150glued and LIS1
Descriptor: ADENOSINE-5'-DIPHOSPHATE, ADENOSINE-5'-TRIPHOSPHATE, Cytoplasmic dynein 1 heavy chain 1, ...
Authors:Singh, K, Lau, C.K, Manigrasso, G, Gassmann, R, Carter, A.P.
Deposit date:2023-07-12
Release date:2024-03-27
Last modified:2024-04-10
Method:ELECTRON MICROSCOPY (4.2 Å)
Cite:Molecular mechanism of dynein-dynactin complex assembly by LIS1.
Science, 383, 2024
2PIS
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BU of 2pis by Molmil
Efforts toward Expansion of the Genetic Alphabet: Structure and Replication of Unnatural Base Pairs
Descriptor: DNA (5'-D(*CP*GP*(CBR)P*GP*AP*AP*(FFD)P*TP*TP*CP*GP*CP*G)-3'), MAGNESIUM ION
Authors:Matsuda, S, Fillo, J.D, Henry, A.A, Wilkins, S.J, Rai, P, Dwyer, T.J, Geierstanger, B.H, Wemmer, D.E, Schultz, P.G, Spraggon, G, Romesberg, F.E.
Deposit date:2007-04-13
Release date:2007-10-30
Last modified:2024-02-21
Method:X-RAY DIFFRACTION (2.8 Å)
Cite:Efforts toward expansion of the genetic alphabet: structure and replication of unnatural base pairs.
J.Am.Chem.Soc., 129, 2007
1AGK
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BU of 1agk by Molmil
THE SOLUTION NMR STRUCTURE OF AN (R)-A-(N6-ADENYL)-STYRENE OXIDE-RAS61 OLIGODEOXYNUCLEOTIDE MODIFIED AT THE SECOND POSITION OF THE CODON 61 REGION, MINIMIZED AVERAGE STRUCTURE
Descriptor: DNA (5'-D(*CP*GP*GP*AP*CP*RP*AP*GP*AP*AP*G)-3'), DNA (5'-D(*CP*TP*TP*CP*TP*TP*GP*TP*CP*CP*G)-3')
Authors:Feng, B, Stone, M.P.
Deposit date:1997-03-25
Release date:1997-08-20
Last modified:2024-05-22
Method:SOLUTION NMR
Cite:Major groove (R)-alpha-(N6-adenyl)styrene oxide adducts in an oligodeoxynucleotide containing the human N-ras codon 61 sequence: conformations of the R(61,2) and R(61,3) sequence isomers from 1H NMR.
Biochemistry, 34, 1995
1PLQ
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BU of 1plq by Molmil
CRYSTAL STRUCTURE OF THE EUKARYOTIC DNA POLYMERASE PROCESSIVITY FACTOR PCNA
Descriptor: MERCURY (II) ION, PROLIFERATING CELL NUCLEAR ANTIGEN (PCNA)
Authors:Krishna, T.S.R, Kong, X.-P, Gary, S, Burgers, P.M, Kuriyan, J.
Deposit date:1995-01-02
Release date:1995-03-31
Last modified:2024-02-14
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Crystal structure of the eukaryotic DNA polymerase processivity factor PCNA.
Cell(Cambridge,Mass.), 79, 1994
8Q6C
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BU of 8q6c by Molmil
The RSL-D32N - sulfonato-calix[8]arene complex, P63 form, acetate pH 4.0
Descriptor: Fucose-binding lectin protein, GLYCEROL, beta-D-fructopyranose, ...
Authors:Flood, R.J, Crowley, P.B.
Deposit date:2023-08-11
Release date:2024-03-06
Last modified:2024-03-20
Method:X-RAY DIFFRACTION (1.38 Å)
Cite:Supramolecular Synthons in Protein-Ligand Frameworks.
Cryst.Growth Des., 24, 2024
6GL8
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BU of 6gl8 by Molmil
Crystal structure of Bcl-2 in complex with the novel orally active inhibitor S55746
Descriptor: Apoptosis regulator Bcl-2,Apoptosis regulator Bcl-2,Apoptosis regulator Bcl-2,Bcl-2-like protein 1,Apoptosis regulator Bcl-2,Apoptosis regulator Bcl-2,Apoptosis regulator Bcl-2, ~{N}-(4-hydroxyphenyl)-3-[6-[[(3~{S})-3-(morpholin-4-ylmethyl)-3,4-dihydro-1~{H}-isoquinolin-2-yl]carbonyl]-1,3-benzodioxol-5-yl]-~{N}-phenyl-5,6,7,8-tetrahydroindolizine-1-carboxamide
Authors:Casara, P, Davidson, J, Claperon, A, Le Toumelin-Braizat, G, Vogler, M, Bruno, A, Chanrion, M, Lysiak-Auvity, G, Le Diguarher, T, Starck, J.B, Chen, I, Whitehead, N, Graham, C, Matassova, N, Dokurno, P, Pedder, C, Wang, Y, Qiu, S, Girard, A.M, Schneider, E, Grave, F, Studeny, A, Guasconi, G, Rocchetti, F, Maiga, S, Henlin, J.M, Colland, F, Kraus-Berthier, L, Le Gouill, S, Dyer, M.J.S, Hubbard, R, Wood, M, Amiot, M, Cohen, G.M, Hickman, J.A, Morris, E, Murray, J, Geneste, O.
Deposit date:2018-05-23
Release date:2018-11-07
Last modified:2024-01-17
Method:X-RAY DIFFRACTION (1.4 Å)
Cite:S55746 is a novel orally active BCL-2 selective and potent inhibitor that impairs hematological tumor growth.
Oncotarget, 9, 2018
7T2Q
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BU of 7t2q by Molmil
PEGylated Calmodulin-1 (K148U)
Descriptor: CALCIUM ION, Calmodulin-1, MAGNESIUM ION, ...
Authors:Mackay, J.P, Payne, R.J, Patel, K, Dowman, L.J.
Deposit date:2021-12-06
Release date:2022-10-26
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (1.95 Å)
Cite:Site-selective photocatalytic functionalization of peptides and proteins at selenocysteine.
Nat Commun, 13, 2022
6GLD
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BU of 6gld by Molmil
Intercalation of [Ru(TAP)2(11-Br-dppz)]2+ bound to d(TCGGCGCCGA)2
Descriptor: BARIUM ION, Ruthenium (bis-(tetraazaphenanthrene)) (11-bromo-dipyridophenazine), d(TCGGCGCCGA)2
Authors:McQuaid, K.T, Hall, J.P, Cardin, C.J.
Deposit date:2018-05-23
Release date:2019-06-19
Last modified:2024-05-15
Method:X-RAY DIFFRACTION (1.061 Å)
Cite:X-ray Crystal Structures Show DNA Stacking Advantage of Terminal Nitrile Substitution in Ru-dppz Complexes.
Chemistry, 24, 2018
8PR0
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BU of 8pr0 by Molmil
Cytoplasmic dynein-A heavy chain bound to dynactin-p150glued and IC-LC tower
Descriptor: Cytoplasmic dynein 1 heavy chain 1, Cytoplasmic dynein 1 intermediate chain 2, Cytoplasmic dynein 1 light intermediate chain 2, ...
Authors:Singh, K, Lau, C.K, Manigrasso, G, Gassmann, R, Carter, A.P.
Deposit date:2023-07-12
Release date:2024-03-27
Last modified:2024-04-10
Method:ELECTRON MICROSCOPY (9.4 Å)
Cite:Molecular mechanism of dynein-dynactin complex assembly by LIS1.
Science, 383, 2024
6GAS
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BU of 6gas by Molmil
Crystal structure of oxidised ferredoxin/flavodoxin NADP+ oxidoreductase 2 (FNR2) from Bacillus cereus
Descriptor: FLAVIN-ADENINE DINUCLEOTIDE, Ferredoxin--NADP reductase, SODIUM ION
Authors:Gudim, I, Hersleth, H.-P.
Deposit date:2018-04-12
Release date:2018-09-05
Last modified:2024-01-17
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:The Characterization of Different Flavodoxin Reductase-Flavodoxin (FNR-Fld) Interactions Reveals an Efficient FNR-Fld Redox Pair and Identifies a Novel FNR Subclass.
Biochemistry, 57, 2018
5XVX
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BU of 5xvx by Molmil
Crystal Structure of Aspergillus niger Glutamate Dehydrogenase Complexed With Alpha-ketoglutarate and NADPH
Descriptor: 2-OXOGLUTARIC ACID, DI(HYDROXYETHYL)ETHER, GLYCEROL, ...
Authors:Prakash, P, Punekar, N.S, Bhaumik, P.
Deposit date:2017-06-28
Release date:2018-03-21
Last modified:2024-03-27
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Structural basis for the catalytic mechanism and alpha-ketoglutarate cooperativity of glutamate dehydrogenase.
J. Biol. Chem., 293, 2018
8JI8
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BU of 8ji8 by Molmil
Crystal Structure of Prophenoloxidase PPO6 chimeric mutant (F215EASNRAIVD224 to G215DGPDSVVR223) from Aedes aegypti
Descriptor: 1,2-ETHANEDIOL, 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL, COPPER (II) ION, ...
Authors:Zhu, X, Zhang, L, Yang, X, Bao, P, Ren, D, Han, Q.
Deposit date:2023-05-26
Release date:2023-11-01
Method:X-RAY DIFFRACTION (2.65 Å)
Cite:Mosquitoes have evolved two types of prophenoloxidases
To Be Published
6G9X
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BU of 6g9x by Molmil
Crystal structure of a MFS transporter at 2.54 Angstroem resolution
Descriptor: 2-sulfanylbenzoic acid, 4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID, MERCURY (II) ION, ...
Authors:Kalbermatter, D, Bosshart, P, Bonetti, S, Fotiadis, D.
Deposit date:2018-04-11
Release date:2019-07-03
Last modified:2024-05-08
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Mechanistic basis of L-lactate transport in the SLC16 solute carrier family.
Nat Commun, 10, 2019
6X29
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BU of 6x29 by Molmil
SARS-CoV-2 rS2d Down State Spike Protein Trimer
Descriptor: Spike glycoprotein
Authors:Henderson, R, Acharya, P.
Deposit date:2020-05-20
Release date:2020-05-27
Last modified:2020-10-21
Method:ELECTRON MICROSCOPY (2.7 Å)
Cite:Controlling the SARS-CoV-2 spike glycoprotein conformation.
Nat.Struct.Mol.Biol., 27, 2020
7NUP
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BU of 7nup by Molmil
Endoplasmic reticulum aminopeptidase 2 complexed with a mixed hydroxamic and sulfonyl ligand
Descriptor: (3~{S})-4-(4-hydroxyphenyl)-~{N}-oxidanyl-3-[5-[[(5-phenylthiophen-2-yl)sulfonylamino]methyl]-1,2,3-triazol-1-yl]butanamide, 1,2-ETHANEDIOL, 2-acetamido-2-deoxy-beta-D-glucopyranose, ...
Authors:Mpakali, A, Giastas, P, Stratikos, E.
Deposit date:2021-03-12
Release date:2022-06-22
Last modified:2024-01-31
Method:X-RAY DIFFRACTION (3.1 Å)
Cite:Endoplasmic reticulum aminopeptidase 2 complexed with a mixed hydroxamic and sulfonyl ligand
To Be Published
6HJQ
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BU of 6hjq by Molmil
Structure of Full-length Influenza Hemagglutinin (A/duck/Alberta/35/76) in complex with FISW84 Fab Fragment
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-[alpha-L-fucopyranose-(1-6)]2-acetamido-2-deoxy-beta-D-glucopyranose, Heavy chain of FISW84 Fab, ...
Authors:Benton, D.J, Rosenthal, P.B.
Deposit date:2018-09-04
Release date:2018-09-26
Last modified:2020-07-29
Method:ELECTRON MICROSCOPY (4.1 Å)
Cite:Influenza hemagglutinin membrane anchor.
Proc. Natl. Acad. Sci. U.S.A., 115, 2018
6NP1
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BU of 6np1 by Molmil
Product state mimicry leads to aminoglycoside discrimination in an antibiotic acetyltransferase
Descriptor: Aminoglycoside N(3)-acetyltransferase, MAGNESIUM ION
Authors:Kumar, P, Cuneo, M.J.
Deposit date:2019-01-17
Release date:2019-09-25
Last modified:2023-10-11
Method:X-RAY DIFFRACTION (1.6 Å)
Cite:Low-Barrier and Canonical Hydrogen Bonds Modulate Activity and Specificity of a Catalytic Triad.
Angew.Chem.Int.Ed.Engl., 58, 2019
7K90
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BU of 7k90 by Molmil
Structure of the SARS-CoV-2 S 6P trimer in complex with the human neutralizing antibody Fab fragment, C144
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, C144 Fab Heavy Chain, C144 Fab Light Chain, ...
Authors:Barnes, C.O, Esswein, S.R, Bjorkman, P.J.
Deposit date:2020-09-27
Release date:2020-10-21
Last modified:2021-01-13
Method:ELECTRON MICROSCOPY (3.24 Å)
Cite:SARS-CoV-2 neutralizing antibody structures inform therapeutic strategies.
Nature, 588, 2020
1BLD
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BU of 1bld by Molmil
BASIC FIBROBLAST GROWTH FACTOR (FGF-2) MUTANT WITH CYS 78 REPLACED BY SER AND CYS 96 REPLACED BY SER, NMR
Descriptor: BASIC FIBROBLAST GROWTH FACTOR
Authors:Powers, R, Seddon, A.P, Bohlen, P, Moy, F.J.
Deposit date:1996-05-20
Release date:1996-11-08
Last modified:2024-05-22
Method:SOLUTION NMR
Cite:High-resolution solution structure of basic fibroblast growth factor determined by multidimensional heteronuclear magnetic resonance spectroscopy.
Biochemistry, 35, 1996
8E6D
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BU of 8e6d by Molmil
Crystal structure of MERS 3CL protease in complex with a p-fluorophenyl dimethyl sulfane inhibitor
Descriptor: (1R,2S)-2-{[N-({2-[(4-fluorophenyl)sulfanyl]-2-methylpropoxy}carbonyl)-L-leucyl]amino}-1-hydroxy-3-[(3S)-2-oxopyrrolidin-3-yl]propane-1-sulfonic acid, Orf1a protein
Authors:Liu, L, Lovell, S, Battaile, K.P, Dampalla, C.S, Groutas, W.C.
Deposit date:2022-08-22
Release date:2022-09-07
Last modified:2024-05-01
Method:X-RAY DIFFRACTION (2.7 Å)
Cite:Structure-guided design of direct-acting antivirals that exploit the gem-dimethyl effect and potently inhibit 3CL proteases of severe acute respiratory syndrome Coronavirus-2 (SARS-CoV-2) and middle east respiratory syndrome coronavirus (MERS-CoV).
Eur.J.Med.Chem., 254, 2023

222415

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