Loading
PDBj
MenuPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help
PDB: 45697 results

4W1Q
DownloadVisualize
BU of 4w1q by Molmil
KINETIC CRYSTALLOGRAPHY OF ALPHA_E7-CARBOXYLESTERSE FROM LUCILLA CUPRINA - ABSORBED X-RAY DOSE 7.39 MGy TEMP 150K
Descriptor: DIETHYL HYDROGEN PHOSPHATE, E3
Authors:Jackson, C.J, Carr, P.D, Weik, M, Huber, T, Meirelles, T, Correy, G.
Deposit date:2014-08-14
Release date:2015-08-19
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (2.12 Å)
Cite:Mapping the Accessible Conformational Landscape of an Insect Carboxylesterase Using Conformational Ensemble Analysis and Kinetic Crystallography
Structure, 24, 2016
4W1S
DownloadVisualize
BU of 4w1s by Molmil
KINETIC CRYSTALLOGRAPHY OF ALPHA_E7-CARBOXYLESTERSE FROM LUCILLA CUPRINA - ABSORBED X-RAY DOSE 11.09 MGy TEMP 150K
Descriptor: DIETHYL HYDROGEN PHOSPHATE, E3
Authors:jackson, C.j, carr, p.d, weik, m, huber, t, meirelles, t, correy, g.
Deposit date:2014-08-14
Release date:2015-08-19
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Mapping the Accessible Conformational Landscape of an Insect Carboxylesterase Using Conformational Ensemble Analysis and Kinetic Crystallography
Structure, 24, 2016
1W7F
DownloadVisualize
BU of 1w7f by Molmil
Crystal structure of the class A beta-lactamase BS3 inhibited with isocitrate
Descriptor: BETA-LACTAMASE, ISOCITRIC ACID
Authors:Petrella, S, Sauvage, E, Herman, R, Charlier, P.
Deposit date:2004-09-01
Release date:2006-05-24
Last modified:2023-12-13
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Crystal Structure of the Class a Beta-Lactamase Bs3 Bs3 Inhibited with Isocitrate
To be Published
4O6Q
DownloadVisualize
BU of 4o6q by Molmil
0.95A resolution structure of the hemophore HasA from Pseudomonas aeruginosa (Y75A mutant)
Descriptor: FORMIC ACID, HasAp, PROTOPORPHYRIN IX CONTAINING FE
Authors:Lovell, S, Kumar, R, Battaile, K.P, Matsumura, H, Yao, H, Rodriguez, J.C, Moenne-Loccoz, P, Rivera, M.
Deposit date:2013-12-23
Release date:2014-03-26
Last modified:2023-09-20
Method:X-RAY DIFFRACTION (0.95 Å)
Cite:Replacing the Axial Ligand Tyrosine 75 or Its Hydrogen Bond Partner Histidine 83 Minimally Affects Hemin Acquisition by the Hemophore HasAp from Pseudomonas aeruginosa.
Biochemistry, 53, 2014
1VZQ
DownloadVisualize
BU of 1vzq by Molmil
Complex of thrombin with designed inhibitor 7165
Descriptor: 4-[(3AS,4R,7R,8AS,8BR)-2-(1,3-BENZODIOXOL-5-YLMETHYL)-7-HYDROXY-1,3-DIOXODECAHYDROPYRROLO[3,4-A]PYRROLIZIN-4-YL]BENZENECARBOXIMIDAMIDE, CALCIUM ION, HIRUDIN VARIANT-2, ...
Authors:Shaerer, K, Morgenthaler, M, Seiler, P, Diederich, F, Banner, D.W, Tschopp, T, Obst-Sander, U.
Deposit date:2004-05-24
Release date:2005-06-20
Last modified:2023-12-13
Method:X-RAY DIFFRACTION (1.54 Å)
Cite:Enantiomerically Pure Thrombin Inhibitors for Exploring the Molecular-Recognition Features of the Oxyanion Hole
Helv.Chim.Acta, 87, 2004
1W4O
DownloadVisualize
BU of 1w4o by Molmil
Binding of Nonnatural 3'-Nucleotides to Ribonuclease A
Descriptor: PANCREATIC RIBONUCLEASE A, URACIL ARABINOSE-3'-PHOSPHATE
Authors:Jenkins, C.L, Thiyagarajan, N, Sweeney, R.Y, Guy, M.P, Kelemen, B.R, Acharya, K.R, Raines, R.T.
Deposit date:2004-07-27
Release date:2005-02-02
Last modified:2023-12-13
Method:X-RAY DIFFRACTION (1.6 Å)
Cite:Binding of Non-Natural 3'-Nucleotides to Ribonuclease A
FEBS J., 272, 2005
4OSS
DownloadVisualize
BU of 4oss by Molmil
Crystal structure of the S505Q mutant of TAL effector dHax3
Descriptor: DNA (5'-D(*AP*GP*AP*GP*AP*GP*AP*CP*AP*AP*AP*GP*GP*GP*AP*CP*A)-3'), DNA (5'-D(*TP*GP*TP*CP*CP*CP*TP*TP*TP*GP*TP*CP*TP*CP*TP*CP*T)-3'), Hax3
Authors:Deng, D, Wu, J.P, Yan, C.Y, Pan, X.J, Yan, N.
Deposit date:2014-02-13
Release date:2014-05-28
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (2.397 Å)
Cite:Revisiting the TALE repeat
Protein Cell, 5, 2014
6ZIL
DownloadVisualize
BU of 6zil by Molmil
Structure of the isolated REC domain of RcsB from Salmonella enterica serovar Typhimurium in the apo form
Descriptor: Transcriptional regulatory protein RcsB
Authors:Huesa, J, Marina, A, Casino, P.
Deposit date:2020-06-26
Release date:2021-02-17
Last modified:2024-01-31
Method:X-RAY DIFFRACTION (3.12 Å)
Cite:Structure-based analyses of Salmonella RcsB variants unravel new features of the Rcs regulon.
Nucleic Acids Res., 49, 2021
3UGK
DownloadVisualize
BU of 3ugk by Molmil
Crystal Structure of C205S mutant and Saccharopine Dehydrogenase from Saccharomyces cerevisiae.
Descriptor: Saccharopine dehydrogenase [NAD+, L-lysine-forming]
Authors:Cook, P.F, Kumar, V.P, Thomas, L.M, West, A.H, Bobyk, K.D.
Deposit date:2011-11-02
Release date:2012-02-01
Last modified:2024-02-28
Method:X-RAY DIFFRACTION (2.01 Å)
Cite:Evidence in Support of Lysine 77 and Histidine 96 as Acid-Base Catalytic Residues in Saccharopine Dehydrogenase from Saccharomyces cerevisiae.
Biochemistry, 51, 2012
7R8M
DownloadVisualize
BU of 7r8m by Molmil
Structure of the SARS-CoV-2 S 6P trimer in complex with neutralizing antibody C032
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-[alpha-L-fucopyranose-(1-6)]2-acetamido-2-deoxy-beta-D-glucopyranose, ...
Authors:DeLaitsch, A.T, Barnes, C.O, Bjorkman, P.J.
Deposit date:2021-06-26
Release date:2021-08-04
Last modified:2021-10-06
Method:ELECTRON MICROSCOPY (3.4 Å)
Cite:Affinity maturation of SARS-CoV-2 neutralizing antibodies confers potency, breadth, and resilience to viral escape mutations.
Immunity, 54, 2021
4W92
DownloadVisualize
BU of 4w92 by Molmil
Crystal structure of Bacillus subtilis cyclic-di-AMP riboswitch ydaO
Descriptor: (2R,3R,3aS,5R,7aR,9R,10R,10aS,12R,14aR)-2,9-bis(6-amino-9H-purin-9-yl)octahydro-2H,7H-difuro[3,2-d:3',2'-j][1,3,7,9,2,8 ]tetraoxadiphosphacyclododecine-3,5,10,12-tetrol 5,12-dioxide, 1,2-ETHANEDIOL, C-di-AMP ribsoswitch, ...
Authors:Jones, C.P, Ferre-D'Amare, A.R.
Deposit date:2014-08-26
Release date:2014-10-22
Last modified:2023-12-27
Method:X-RAY DIFFRACTION (3.209 Å)
Cite:Crystal structure of a c-di-AMP riboswitch reveals an internally pseudo-dimeric RNA.
Embo J., 33, 2014
1WBE
DownloadVisualize
BU of 1wbe by Molmil
X-ray structure of bovine GLTP
Descriptor: DECANOIC ACID, GLYCEROL, GLYCOLIPID TRANSFER PROTEIN
Authors:Airenne, T.T, Kidron, H, West, G, Nymalm, Y, Nylund, M, Mattjus, P, Salminen, T.A.
Deposit date:2004-11-01
Release date:2005-11-30
Last modified:2023-12-13
Method:X-RAY DIFFRACTION (1.36 Å)
Cite:Structural Evidence for Adaptive Ligand Binding of Glycolipid Transfer Protein.
J.Mol.Biol., 355, 2006
1W0I
DownloadVisualize
BU of 1w0i by Molmil
Arabidopsis thaliana Mitochondrial KAS
Descriptor: 3-OXOACYL CARRIER PROTEIN SYNTHASE, POTASSIUM ION, SULFATE ION
Authors:Olsen, J.G, Rasmussen, A.V, von Wettstein-Knowles, P, Henriksen, A.
Deposit date:2004-06-04
Release date:2004-11-10
Last modified:2023-12-13
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Structure of the mitochondrial beta-ketoacyl-[acyl carrier protein] synthase from Arabidopsis and its role in fatty acid synthesis.
FEBS Lett., 577, 2004
6Z0K
DownloadVisualize
BU of 6z0k by Molmil
Crystal structure of laccase from Pediococcus acidilactici Pp5930 (Hepes pH 7.5)
Descriptor: 1,2-ETHANEDIOL, COPPER (II) ION, Putative multicopper oxidase mco
Authors:Casino, P, Huesa, J, Pardo, I.
Deposit date:2020-05-09
Release date:2021-03-10
Last modified:2024-01-24
Method:X-RAY DIFFRACTION (2 Å)
Cite:Structural analysis and biochemical properties of laccase enzymes from two Pediococcus species.
Microb Biotechnol, 14, 2021
6Z0J
DownloadVisualize
BU of 6z0j by Molmil
Crystal structure of laccase from Pediococcus acidilactici Pa5930 (Tris-HCl pH 8.5)
Descriptor: COPPER (II) ION, Putative multicopper oxidase mco
Authors:Casino, P, Huesa, J, Pardo, I.
Deposit date:2020-05-09
Release date:2021-03-10
Last modified:2024-01-24
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:Structural analysis and biochemical properties of laccase enzymes from two Pediococcus species.
Microb Biotechnol, 14, 2021
7RTH
DownloadVisualize
BU of 7rth by Molmil
Crystal structure of an anti-lysozyme nanobody in complex with an anti-nanobody Fab "NabFab"
Descriptor: CHLORIDE ION, DI(HYDROXYETHYL)ETHER, Fragment Antigen-Binding Heavy Chain, ...
Authors:Filippova, E.V, Mukherjee, S, Bloch, J.S, Locher, K.P, Kossiakoff, A.A.
Deposit date:2021-08-13
Release date:2021-09-01
Last modified:2023-10-18
Method:X-RAY DIFFRACTION (3.19 Å)
Cite:Development of a universal nanobody-binding Fab module for fiducial-assisted cryo-EM studies of membrane proteins.
Proc.Natl.Acad.Sci.USA, 118, 2021
6YUR
DownloadVisualize
BU of 6yur by Molmil
Crystal structure of S. aureus FabI inhibited by SKTS1
Descriptor: 6-[4-(4-hexyl-2-oxidanyl-phenoxy)phenoxy]pyridin-2-ol, Enoyl-[acyl-carrier-protein] reductase [NADPH], NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE
Authors:Weinrich, J.D, Eltschkner, S, Schiebel, J, Kehrein, J, Le, T.A, Davoodi, S, Merget, B, Tonge, P.J, Engels, B, Sotriffer, C.A, Kisker, C.
Deposit date:2020-04-27
Release date:2021-03-24
Last modified:2024-01-24
Method:X-RAY DIFFRACTION (1.96 Å)
Cite:A Long Residence Time Enoyl-Reductase Inhibitor Explores an Extended Binding Region with Isoenzyme-Dependent Tautomer Adaptation and Differential Substrate-Binding Loop Closure.
Acs Infect Dis., 7, 2021
6Z0L
DownloadVisualize
BU of 6z0l by Molmil
Het-N2 - De novo designed three-helix heterodimer with Cysteine at the N2 position of the alpha-helix
Descriptor: CADMIUM ION, Cys-N2 Strand, Positive Strand, ...
Authors:McEwen, A.G, Poussin-Courmontagne, P, Naudin, E.A, DeGrado, W.F, Torbeev, V.
Deposit date:2020-05-09
Release date:2021-03-17
Last modified:2024-01-24
Method:X-RAY DIFFRACTION (2.33 Å)
Cite:Acyl Transfer Catalytic Activity in De Novo Designed Protein with N-Terminus of alpha-Helix As Oxyanion-Binding Site.
J.Am.Chem.Soc., 143, 2021
4OPC
DownloadVisualize
BU of 4opc by Molmil
Constructing tailored isoprenoid products by structure-guided modification of geranylgeranyl reductase.
Descriptor: (1S)-2-{[{[(2R)-2,3-DIHYDROXYPROPYL]OXY}(HYDROXY)PHOSPHORYL]OXY}-1-[(PALMITOYLOXY)METHYL]ETHYL STEARATE, Conserved Archaeal protein, DIHYDROFLAVINE-ADENINE DINUCLEOTIDE
Authors:McAndrew, R.P, Kung, Y, Xie, X, Liu, C, Pereira, J.H, Keasling, J.D, Adams, P.D.
Deposit date:2014-02-05
Release date:2014-07-09
Last modified:2014-07-23
Method:X-RAY DIFFRACTION (1.4 Å)
Cite:Constructing tailored isoprenoid products by structure-guided modification of geranylgeranyl reductase.
Structure, 22, 2014
4OSQ
DownloadVisualize
BU of 4osq by Molmil
Crystal structure of the S505R mutant of TAL effector dHax3
Descriptor: DNA (5'-D(*AP*GP*AP*GP*AP*GP*AP*TP*AP*AP*AP*GP*GP*GP*AP*CP*A)-3'), DNA (5'-D(*TP*GP*TP*CP*CP*CP*TP*TP*TP*GP*TP*CP*TP*CP*TP*CP*T)-3'), Hax3, ...
Authors:Deng, D, Wu, J.P, Yan, C.Y, Pan, X.J, Yan, N.
Deposit date:2014-02-13
Release date:2014-05-28
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (2.256 Å)
Cite:Revisiting the TALE repeat
Protein Cell, 5, 2014
6ZBO
DownloadVisualize
BU of 6zbo by Molmil
HIF Prolyl Hydroxylase 2 (PHD2/EGLN1) in Complex with 1-(6-morpholinopyrimidin-4-yl)-4-(1H-1,2,3-triazol-1-yl)-1H-pyrazol-5-ol (Molidustat)
Descriptor: 2-(6-morpholin-4-ylpyrimidin-4-yl)-4-(1,2,3-triazol-1-yl)pyrazol-3-ol, CHLORIDE ION, Egl nine homolog 1, ...
Authors:Figg Jr, W.D, McDonough, M.A, Nakashima, Y, Holt-Martyn, J.P, Schofield, C.J.
Deposit date:2020-06-08
Release date:2021-04-07
Last modified:2024-01-24
Method:X-RAY DIFFRACTION (1.79 Å)
Cite:Structural Basis of Prolyl Hydroxylase Domain Inhibition by Molidustat.
Chemmedchem, 16, 2021
6Z4N
DownloadVisualize
BU of 6z4n by Molmil
CRYSTAL STRUCTURE OF OASS COMPLEXED WITH UPAR INHIBITOR
Descriptor: (1~{S},2~{S})-1-[(4-methylphenyl)methyl]-2-phenyl-cyclopropane-1-carboxylic acid, COBALT (II) ION, Cysteine synthase A, ...
Authors:Demitri, N, Storici, P, Campanini, B.
Deposit date:2020-05-25
Release date:2021-04-07
Last modified:2024-01-24
Method:X-RAY DIFFRACTION (1.2 Å)
Cite:Investigational Studies on a Hit Compound Cyclopropane-Carboxylic Acid Derivative Targeting O -Acetylserine Sulfhydrylase as a Colistin Adjuvant.
Acs Infect Dis., 7, 2021
3UED
DownloadVisualize
BU of 3ued by Molmil
Crystal structure of human Survivin bound to histone H3 phosphorylated on threonine-3 (C2 space group).
Descriptor: Baculoviral IAP repeat-containing protein 5, N-terminal fragment of histone H3, ZINC ION
Authors:Niedzialkowska, E, Porebski, P.J, Wang, F, Higgins, J.M, Stukenberg, P.T, Minor, W.
Deposit date:2011-10-30
Release date:2012-03-07
Last modified:2023-09-13
Method:X-RAY DIFFRACTION (2.7 Å)
Cite:Molecular basis for phosphospecific recognition of histone H3 tails by Survivin paralogues at inner centromeres.
Mol.Biol.Cell, 23, 2012
3UGM
DownloadVisualize
BU of 3ugm by Molmil
Structure of TAL effector PthXo1 bound to its DNA target
Descriptor: DNA-1, DNA-2, TAL effector AvrBs3/PthA
Authors:Mak, A.N.S, Bradley, P, Cernadas, R.A, Bogdanove, A.J, Stoddard, B.L.
Deposit date:2011-11-02
Release date:2012-01-04
Last modified:2024-02-28
Method:X-RAY DIFFRACTION (3 Å)
Cite:The Crystal Structure of TAL Effector PthXo1 Bound to Its DNA Target.
Science, 335, 2012
6DKV
DownloadVisualize
BU of 6dkv by Molmil
Directed evolutionary changes in Kemp Eliminase KE07 - Crystal 21 round 5
Descriptor: 5-nitro-2-oxidanyl-benzenecarbonitrile, DI(HYDROXYETHYL)ETHER, Kemp eliminase KE07
Authors:Jackson, C.J, Hong, N.-S, Carr, P.D.
Deposit date:2018-05-30
Release date:2018-08-01
Last modified:2023-10-11
Method:X-RAY DIFFRACTION (1.89 Å)
Cite:The evolution of multiple active site configurations in a designed enzyme.
Nat Commun, 9, 2018

222415

PDB entries from 2024-07-10

PDB statisticsPDBj update infoContact PDBjnumon