1T2W
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![BU of 1t2w by Molmil](/molmil-images/mine/1t2w) | Crystal Structure of Sortase A in Complex with a LPETG peptide | Descriptor: | Class A sortase SrtA, Peptide LEU-PRO-GLU-THR-GLY | Authors: | Zong, Y, Bice, T.W, Ton-That, H, Schneewind, O, Narayana, S.V. | Deposit date: | 2004-04-23 | Release date: | 2004-09-07 | Last modified: | 2023-08-23 | Method: | X-RAY DIFFRACTION (1.8 Å) | Cite: | Crystal structure of Staphylococcus aureus sortase A and its substrate complex J.Biol.Chem., 279, 2004
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1SRQ
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![BU of 1srq by Molmil](/molmil-images/mine/1srq) | Crystal Structure of the Rap1GAP catalytic domain | Descriptor: | (4S)-2-METHYL-2,4-PENTANEDIOL, GTPase-activating protein 1, SULFATE ION | Authors: | Daumke, O, Weyand, M, Chakrabarti, P.P, Vetter, I.R, Wittinghofer, A. | Deposit date: | 2004-03-23 | Release date: | 2004-05-25 | Last modified: | 2024-02-14 | Method: | X-RAY DIFFRACTION (2.9 Å) | Cite: | The GTPase activating protein Rap1GAP uses a catalytic asparagine Nature, 429, 2004
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1UHH
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![BU of 1uhh by Molmil](/molmil-images/mine/1uhh) | Crystal structure of cp-aequorin | Descriptor: | (8R)-8-(CYCLOPENTYLMETHYL)-2-HYDROPEROXY-2-(4-HYDROXYBENZYL)-6-(4-HYDROXYPHENYL)-7,8-DIHYDROIMIDAZO[1,2-A]PYRAZIN-3(2H) -ONE, Aequorin 2 | Authors: | Toma, S, Chong, K.T, Nakagawa, A, Teranishi, K, Inouye, S, Shimomura, O. | Deposit date: | 2003-07-03 | Release date: | 2005-02-08 | Last modified: | 2023-11-15 | Method: | X-RAY DIFFRACTION (1.8 Å) | Cite: | The crystal structures of semi-synthetic aequorins Protein Sci., 14, 2005
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1UHI
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![BU of 1uhi by Molmil](/molmil-images/mine/1uhi) | Crystal structure of i-aequorin | Descriptor: | (2R)-8-BENZYL-2-HYDROPEROXY-6-(4-HYDROXYPHENYL)-2-(4-IODOBENZYL)-7,8-DIHYDROIMIDAZO[1,2-A]PYRAZIN-3(2H)-ONE, Aequorin 2 | Authors: | Toma, S, Chong, K.T, Nakagawa, A, Teranishi, K, Inouye, S, Shimomura, O. | Deposit date: | 2003-07-03 | Release date: | 2005-02-08 | Last modified: | 2023-10-25 | Method: | X-RAY DIFFRACTION (1.8 Å) | Cite: | The crystal structures of semi-synthetic aequorins Protein Sci., 14, 2005
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1UHJ
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![BU of 1uhj by Molmil](/molmil-images/mine/1uhj) | Crystal structure of br-aequorin | Descriptor: | (2S,8R)-8-BENZYL-2-(4-BROMOBENZYL)-2-HYDROPEROXY-6-(4-HYDROXYPHENYL)-7,8-DIHYDROIMIDAZO[1,2-A]PYRAZIN-3(2H)-ONE, Aequorin 2 | Authors: | Toma, S, Chong, K.T, Nakagawa, A, Teranishi, K, Inouye, S, Shimomura, O. | Deposit date: | 2003-07-03 | Release date: | 2005-02-08 | Last modified: | 2023-12-27 | Method: | X-RAY DIFFRACTION (1.8 Å) | Cite: | The crystal structures of semi-synthetic aequorins Protein Sci., 14, 2005
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1UHK
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![BU of 1uhk by Molmil](/molmil-images/mine/1uhk) | Crystal structure of n-aequorin | Descriptor: | (2S,8R)-8-BENZYL-2-HYDROPEROXY-6-(4-HYDROXYPHENYL)-2-(2-NAPHTHYLMETHYL)-7,8-DIHYDROIMIDAZO[1,2-A]PYRAZIN-3(2H)-ONE, Aequorin 2 | Authors: | Toma, S, Chong, K.T, Nakagawa, A, Teranishi, K, Inouye, S, Shimomura, O. | Deposit date: | 2003-07-03 | Release date: | 2005-02-08 | Last modified: | 2023-12-27 | Method: | X-RAY DIFFRACTION (1.6 Å) | Cite: | The crystal structures of semi-synthetic aequorins Protein Sci., 14, 2005
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1ULH
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![BU of 1ulh by Molmil](/molmil-images/mine/1ulh) | A short peptide insertion crucial for angiostatic activity of human tryptophanyl-tRNA synthetase | Descriptor: | Tryptophanyl-tRNA synthetase | Authors: | Kise, Y, Sengoku, T, Ishii, R, Yokoyama, S, Park, S.G, Lee, S.W, Kim, S, Nureki, O, RIKEN Structural Genomics/Proteomics Initiative (RSGI) | Deposit date: | 2003-09-12 | Release date: | 2004-02-03 | Last modified: | 2023-12-27 | Method: | X-RAY DIFFRACTION (2.31 Å) | Cite: | A short peptide insertion crucial for angiostatic activity of human tryptophanyl-tRNA synthetase Nat.Struct.Mol.Biol., 11, 2004
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1UJR
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![BU of 1ujr by Molmil](/molmil-images/mine/1ujr) | Solution structure of WWE domain in BAB28015 | Descriptor: | hypothetical protein AK012080 | Authors: | He, F, Muto, Y, Hamana, H, Shirouzu, M, Terada, T, Kigawa, T, Inoue, M, Yabuki, T, Aoki, M, Seki, E, Matsuda, T, Hirota, H, Yoshida, M, Kobayashi, N, Tanaka, A, Osanai, T, Matsuo, Y, Ohara, O, Nagase, T, Kikuno, R, Nagayama, M, Yokoyama, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI) | Deposit date: | 2003-08-11 | Release date: | 2004-10-05 | Last modified: | 2023-12-27 | Method: | SOLUTION NMR | Cite: | Solution structure of WWE domain in BAB28015 To be Published
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1UJY
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![BU of 1ujy by Molmil](/molmil-images/mine/1ujy) | Solution structure of SH3 domain in Rac/Cdc42 guanine nucleotide exchange factor(GEF) 6 | Descriptor: | Rho guanine nucleotide exchange factor 6 | Authors: | He, F, Muto, Y, Uda, H, Koshiba, S, Shirouzu, M, Terada, T, Kigawa, T, Inoue, M, Yabuki, T, Aoki, M, Seki, E, Matsuda, T, Hirota, H, Yoshida, M, Kobayashi, N, Tanaka, A, Osanai, T, Matsuo, Y, Ohara, O, Nagase, T, Kikuno, R, Nagayama, M, Yokoyama, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI) | Deposit date: | 2003-08-12 | Release date: | 2004-02-12 | Last modified: | 2023-12-27 | Method: | SOLUTION NMR | Cite: | Solution structure of SH3 domain in Rac/Cdc42 guanine nucleotide exchange factor(GEF) 6 To be Published
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1UKQ
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![BU of 1ukq by Molmil](/molmil-images/mine/1ukq) | Crystal structure of cyclodextrin glucanotransferase complexed with a pseudo-maltotetraose derived from acarbose | Descriptor: | 6-AMINO-4-HYDROXYMETHYL-CYCLOHEX-4-ENE-1,2,3-TRIOL, CALCIUM ION, Cyclomaltodextrin glucanotransferase, ... | Authors: | Haga, K, Kanai, R, Sakamoto, O, Harata, K, Yamane, K. | Deposit date: | 2003-09-01 | Release date: | 2004-02-24 | Last modified: | 2023-10-25 | Method: | X-RAY DIFFRACTION (2 Å) | Cite: | Effects of Essential Carbohydrate/Aromatic Stacking Interaction with Tyr100 and Phe259 on Substrate Binding of Cyclodextrin Glycosyltransferase from Alkalophilic Bacillus sp. 1011 J.Biochem.(Tokyo), 134, 2003
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1TFF
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![BU of 1tff by Molmil](/molmil-images/mine/1tff) | Structure of Otubain-2 | Descriptor: | Ubiquitin thiolesterase protein OTUB2 | Authors: | Nanao, M.H, Tcherniuk, S.O, Chroboczek, J, Dideberg, O, Dessen, A, Balakirev, M.Y. | Deposit date: | 2004-05-27 | Release date: | 2004-08-03 | Last modified: | 2021-10-27 | Method: | X-RAY DIFFRACTION (2.1 Å) | Cite: | Crystal structure of human otubain 2. Embo Rep., 5, 2004
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1SYL
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![BU of 1syl by Molmil](/molmil-images/mine/1syl) | Crystal structure of inactive mutant dUTPase complexed with substrate dUTP | Descriptor: | 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL, DEOXYURIDINE-5'-TRIPHOSPHATE, Deoxyuridine 5'-triphosphate nucleotidohydrolase, ... | Authors: | Barabas, O, Kovari, J, Pongracz, V, Wilmanns, M, Vertessy, B.G. | Deposit date: | 2004-04-01 | Release date: | 2004-09-07 | Last modified: | 2023-10-25 | Method: | X-RAY DIFFRACTION (1.95 Å) | Cite: | Structural Insights into the Catalytic Mechanism of Phosphate Ester Hydrolysis by dUTPase J.Biol.Chem., 279, 2004
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1SU7
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![BU of 1su7 by Molmil](/molmil-images/mine/1su7) | Carbon Monoxide Dehydrogenase from Carboxydothermus hydrogenoformans- DTT reduced state | Descriptor: | Carbon monoxide dehydrogenase 2, FE(4)-NI(1)-S(5) CLUSTER, FE2/S2 (INORGANIC) CLUSTER, ... | Authors: | Dobbek, H, Svetlitchnyi, V, Liss, J, Meyer, O. | Deposit date: | 2004-03-26 | Release date: | 2004-05-11 | Last modified: | 2024-02-14 | Method: | X-RAY DIFFRACTION (1.12 Å) | Cite: | Carbon Monoxide Induced Decomposition of the Active Site [Ni-4Fe-5S] Cluster of CO Dehydrogenase J.Am.Chem.Soc., 126, 2004
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1T6C
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![BU of 1t6c by Molmil](/molmil-images/mine/1t6c) | Structural characterization of the Ppx/GppA protein family: crystal structure of the Aquifex aeolicus family member | Descriptor: | (4S)-2-METHYL-2,4-PENTANEDIOL, CALCIUM ION, CHLORIDE ION, ... | Authors: | Kristensen, O, Laurberg, M, Liljas, A, Kastrup, J.S, Gajhede, M. | Deposit date: | 2004-05-06 | Release date: | 2004-08-03 | Last modified: | 2024-04-03 | Method: | X-RAY DIFFRACTION (1.53 Å) | Cite: | Structural characterization of the stringent response related exopolyphosphatase/guanosine pentaphosphate phosphohydrolase protein family Biochemistry, 43, 2004
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1T61
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![BU of 1t61 by Molmil](/molmil-images/mine/1t61) | crystal structure of collagen IV NC1 domain from placenta basement membrane | Descriptor: | CALCIUM ION, CHLORIDE ION, GLYCEROL, ... | Authors: | Vanacore, R.M, Shanmugasundararaj, S, Friedman, D.B, Bondar, O, Hudson, B.G, Sundaramoorthy, M. | Deposit date: | 2004-05-05 | Release date: | 2004-09-21 | Last modified: | 2011-07-13 | Method: | X-RAY DIFFRACTION (1.5 Å) | Cite: | The alpha1.alpha2 network of collagen IV. Reinforced stabilization of the noncollagenous domain-1 by noncovalent forces and the absence of Met-Lys cross-links J.Biol.Chem., 279, 2004
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1V04
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![BU of 1v04 by Molmil](/molmil-images/mine/1v04) | serum paraoxonase by directed evolution | Descriptor: | CALCIUM ION, PHOSPHATE ION, SERUM PARAOXONASE/ARYLESTERASE 1 | Authors: | Harel, M, Aharoni, A, Gaidukov, L, Brumshtein, B, Khersonsky, O, Yagur, S, Meged, R, Dvir, H, Ravelli, R.B.G, McCarthy, A, Toker, L, Silman, I, Sussman, J.L, Tawfik, D.S. | Deposit date: | 2004-03-22 | Release date: | 2004-04-23 | Last modified: | 2017-03-22 | Method: | X-RAY DIFFRACTION (2.2 Å) | Cite: | Structure and Evolution of the Serum Paraoxonase Family of Detoxifying and Anti-Atherosclerotic Enzymes Nat.Struct.Mol.Biol., 11, 2004
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1UKV
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![BU of 1ukv by Molmil](/molmil-images/mine/1ukv) | Structure of RabGDP-dissociation inhibitor in complex with prenylated YPT1 GTPase | Descriptor: | GERAN-8-YL GERAN, GTP-binding protein YPT1, GUANOSINE-5'-DIPHOSPHATE, ... | Authors: | Rak, A, Pylypenko, O, Durek, T, Watzke, A, Kushnir, S, Brunsveld, L, Waldmann, H, Goody, R.S, Alexandrov, K. | Deposit date: | 2003-09-01 | Release date: | 2004-09-01 | Last modified: | 2023-12-27 | Method: | X-RAY DIFFRACTION (1.5 Å) | Cite: | Structure of Rab GDP-dissociation inhibitor in complex with prenylated YPT1 GTPase Science, 302, 2003
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1UKS
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![BU of 1uks by Molmil](/molmil-images/mine/1uks) | Crystal structure of F183L/F259L mutant cyclodextrin glucanotransferase complexed with a pseudo-maltotetraose derived from acarbose | Descriptor: | 4,6-dideoxy-alpha-D-xylo-hexopyranose-(1-4)-beta-D-galactopyranose, 6-AMINO-4-HYDROXYMETHYL-CYCLOHEX-4-ENE-1,2,3-TRIOL, CALCIUM ION, ... | Authors: | Haga, K, Kanai, R, Sakamoto, O, Harata, K, Yamane, K. | Deposit date: | 2003-09-01 | Release date: | 2004-02-24 | Last modified: | 2023-10-25 | Method: | X-RAY DIFFRACTION (1.9 Å) | Cite: | Effects of Essential Carbohydrate/Aromatic Stacking Interaction with Tyr100 and Phe259 on Substrate Binding of Cyclodextrin Glycosyltransferase from Alkalophilic Bacillus sp. 1011 J.Biochem.(Tokyo), 134, 2003
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1UKT
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![BU of 1ukt by Molmil](/molmil-images/mine/1ukt) | Crystal structure of Y100L mutant cyclodextrin glucanotransferase compexed with an acarbose | Descriptor: | 4,6-dideoxy-alpha-D-xylo-hexopyranose-(1-4)-alpha-D-glucopyranose-(1-4)-beta-D-galactopyranose, 6-AMINO-4-HYDROXYMETHYL-CYCLOHEX-4-ENE-1,2,3-TRIOL, CALCIUM ION, ... | Authors: | Haga, K, Kanai, R, Sakamoto, O, Harata, K, Yamane, K. | Deposit date: | 2003-09-01 | Release date: | 2004-02-24 | Last modified: | 2023-10-25 | Method: | X-RAY DIFFRACTION (2.2 Å) | Cite: | Effects of Essential Carbohydrate/Aromatic Stacking Interaction with Tyr100 and Phe259 on Substrate Binding of Cyclodextrin Glycosyltransferase from Alkalophilic Bacillus sp. 1011 J.Biochem.(Tokyo), 134, 2003
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1TP9
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![BU of 1tp9 by Molmil](/molmil-images/mine/1tp9) | PRX D (type II) from Populus tremula | Descriptor: | SULFATE ION, peroxiredoxin | Authors: | Echalier, A, Trivelli, X, Corbier, C, Rouhier, N, Walker, O, Tsan, P, Jacquot, J.P, Krimm, I, Lancelin, J.M. | Deposit date: | 2004-06-16 | Release date: | 2005-04-26 | Last modified: | 2024-03-13 | Method: | X-RAY DIFFRACTION (1.62 Å) | Cite: | Crystal structure and solution NMR dynamics of a D (type II) peroxiredoxin glutaredoxin and thioredoxin dependent: a new insight into the peroxiredoxin oligomerism Biochemistry, 44, 2005
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3TS6
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![BU of 3ts6 by Molmil](/molmil-images/mine/3ts6) | |
1V2X
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![BU of 1v2x by Molmil](/molmil-images/mine/1v2x) | TrmH | Descriptor: | PHOSPHATE ION, S-ADENOSYLMETHIONINE, tRNA (Gm18) methyltransferase | Authors: | Nureki, O, Watanabe, K, Fukai, S, Ishii, R, Endo, Y, Hori, H, Yokoyama, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI) | Deposit date: | 2003-10-17 | Release date: | 2004-05-04 | Last modified: | 2023-12-27 | Method: | X-RAY DIFFRACTION (1.5 Å) | Cite: | Deep Knot Structure for Construction of Active Site and Cofactor Binding Site of tRNA Modification Enzyme STRUCTURE, 12, 2004
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1VC3
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![BU of 1vc3 by Molmil](/molmil-images/mine/1vc3) | |
1V33
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![BU of 1v33 by Molmil](/molmil-images/mine/1v33) | Crystal structure of DNA primase from Pyrococcus horikoshii | Descriptor: | DNA primase small subunit, PHOSPHATE ION, ZINC ION | Authors: | Ito, N, Nureki, O, Shirouzu, M, Yokoyama, S, Hanaoka, F, RIKEN Structural Genomics/Proteomics Initiative (RSGI) | Deposit date: | 2003-10-25 | Release date: | 2004-03-23 | Last modified: | 2023-12-27 | Method: | X-RAY DIFFRACTION (1.8 Å) | Cite: | Crystal structure of the Pyrococcus horikoshii DNA primase-UTP complex: implications for the mechanism of primer synthesis. Genes Cells, 8, 2003
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1UOY
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![BU of 1uoy by Molmil](/molmil-images/mine/1uoy) | The bubble protein from Penicillium brevicompactum Dierckx exudate. | Descriptor: | BUBBLE PROTEIN | Authors: | Olsen, J.G, Flensburg, C, Olsen, O, Seibold, M, Bricogne, G, Henriksen, A. | Deposit date: | 2003-09-26 | Release date: | 2003-11-04 | Last modified: | 2019-04-03 | Method: | X-RAY DIFFRACTION (1.5 Å) | Cite: | Solving the Structure of the Bubble Protein Using the Anomalous Sulfur Signal from Single-Crystal in-House Cu Kalpha Diffraction Data Only Acta Crystallogr.,Sect.D, 60, 2004
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