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PDB: 45 件
3WIH
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Crystal structure of the third fibronectin domain (Fn3) of human ROBO1 in complex with the Fab fragment of murine monoclonal antibody B2212A.
分子名称: GLYCEROL, Roundabout homolog 1, anti-human ROBO1 antibody B2212A Fab heavy chain, ...
著者Nakayama, T, Mizohata, E, Yamashita, T, Nagatoishi, M, Iwanari, H, Mochizuki, Y, Kado, Y, Yokota, Y, Sato, R, Tsumoto, K, Fujitani, H, Kodama, T, Hamakubo, T, Inoue, T.
登録日2013-09-12
公開日2015-01-21
最終更新日2024-10-30
実験手法X-RAY DIFFRACTION (1.701 Å)
主引用文献Structural features of interfacial tyrosine residue in ROBO1 fibronectin domain-antibody complex: Crystallographic, thermodynamic, and molecular dynamic analyses
Protein Sci., 24, 2015
3WII
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Crystal structure of the Fab fragment of B2212A, a murine monoclonal antibody specific for the third fibronectin domain (Fn3) of human ROBO1.
分子名称: anti-human ROBO1 antibody B2212A Fab heavy chain, anti-human ROBO1 antibody B2212A Fab light chain
著者Nakayama, T, Mizohata, E, Yamashita, T, Nagatoishi, S, Nakakido, M, Iwanari, H, Mochizuki, Y, Kado, Y, Yokota, Y, Sato, R, Tsumoto, K, Fujitani, H, Kodama, T, Hamakubo, T, Inoue, T.
登録日2013-09-12
公開日2015-01-21
最終更新日2017-11-22
実験手法X-RAY DIFFRACTION (1.6 Å)
主引用文献Structural features of interfacial tyrosine residue in ROBO1 fibronectin domain-antibody complex: Crystallographic, thermodynamic, and molecular dynamic analyses
Protein Sci., 24, 2015
6LZY
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Structure of Phytolacca americana UGT3 with 18-crown-6
分子名称: 1,2-ETHANEDIOL, 1,4,7,10,13,16-HEXAOXACYCLOOCTADECANE, BROMIDE ION, ...
著者Maharjan, R, Fukuda, Y, Nakayama, T, Nakayama, T, Hamada, H, Ozaki, S, Inoue, T.
登録日2020-02-19
公開日2020-06-10
最終更新日2023-11-29
実験手法X-RAY DIFFRACTION (2.4 Å)
主引用文献Crown-ether-mediated crystal structures of the glycosyltransferase PaGT3 from Phytolacca americana.
Acta Crystallogr D Struct Biol, 76, 2020
6LZX
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Structure of Phytolacca americana UGT3 with 15-crown-5
分子名称: 1,2-ETHANEDIOL, 1,4,7,10,13-pentaoxacyclopentadecane, BROMIDE ION, ...
著者Maharjan, R, Fukuda, Y, Nakayama, T, Nakayama, T, Hamada, H, Ozaki, S, Inoue, T.
登録日2020-02-19
公開日2020-06-10
最終更新日2023-11-29
実験手法X-RAY DIFFRACTION (3.101 Å)
主引用文献Crown-ether-mediated crystal structures of the glycosyltransferase PaGT3 from Phytolacca americana.
Acta Crystallogr D Struct Biol, 76, 2020
7VEK
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Crystal structure of Phytolacca americana UGT3 with capsaicin and UDP-2fluoroglucose
分子名称: (6E)-N-(4-hydroxy-3-methoxybenzyl)-8-methylnon-6-enamide, 1,4,7,10,13,16-HEXAOXACYCLOOCTADECANE, Glycosyltransferase, ...
著者Maharjan, R, Fukuda, Y, Nakayama, T, Nakayama, T, Hamada, H, Ozaki, S, Inoue, T.
登録日2021-09-09
公開日2022-03-02
最終更新日2023-11-29
実験手法X-RAY DIFFRACTION (2.6 Å)
主引用文献Structural basis for substrate recognition in the Phytolacca americana glycosyltransferase PaGT3.
Acta Crystallogr D Struct Biol, 78, 2022
7VEL
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Crystal structure of Phytolacca americana UGT3 with UDP-2fluoroglucose
分子名称: 1,2-ETHANEDIOL, 1,4,7,10,13,16-HEXAOXACYCLOOCTADECANE, Glycosyltransferase, ...
著者Maharjan, R, Fukuda, Y, Nakayama, T, Nakayama, T, Hamada, H, Ozaki, S, Inoue, T.
登録日2021-09-09
公開日2022-03-02
最終更新日2023-11-29
実験手法X-RAY DIFFRACTION (2.15 Å)
主引用文献Structural basis for substrate recognition in the Phytolacca americana glycosyltransferase PaGT3.
Acta Crystallogr D Struct Biol, 78, 2022
7VEJ
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Crystal structure of Phytolacca americana UGT3 with kaempferol and UDP-2fluoroglucose
分子名称: 1,2-ETHANEDIOL, 1,4,7,10,13,16-HEXAOXACYCLOOCTADECANE, 3,5,7-TRIHYDROXY-2-(4-HYDROXYPHENYL)-4H-CHROMEN-4-ONE, ...
著者Maharjan, R, Fukuda, Y, Nakayama, T, Nakayama, T, Hamada, H, Ozaki, S, Inoue, T.
登録日2021-09-09
公開日2022-03-02
最終更新日2023-11-29
実験手法X-RAY DIFFRACTION (1.85 Å)
主引用文献Structural basis for substrate recognition in the Phytolacca americana glycosyltransferase PaGT3.
Acta Crystallogr D Struct Biol, 78, 2022
8YFY
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CRYSTAL STRUCTURE OF THE EST1 H274D MUTANT AT PH 4.2
分子名称: Carboxylesterase, octyl beta-D-glucopyranoside
著者Unno, H, Oshima, Y, Nishino, T, Nakayama, T, Kusunoki, M.
登録日2024-02-26
公開日2024-07-10
最終更新日2024-08-28
実験手法X-RAY DIFFRACTION (1.45 Å)
主引用文献Lowering pH optimum of activity of SshEstI, a slightly alkaliphilic archaeal esterase of the hormone-sensitive lipase family.
J.Biosci.Bioeng., 138, 2024
8YFZ
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CRYSTAL STRUCTURE OF THE EST1 H274E MUTANT AT PH 4.2
分子名称: Carboxylesterase, octyl beta-D-glucopyranoside
著者Unno, H, Oshima, Y, Nishino, T, Nakayama, T, Kusunoki, M.
登録日2024-02-26
公開日2024-07-10
実験手法X-RAY DIFFRACTION (1.5 Å)
主引用文献Lowering pH optimum of activity of SshEstI, a slightly alkaliphilic archaeal esterase of the hormone-sensitive lipase family.
J.Biosci.Bioeng., 2024
8J9F
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Structure of STG-hydrolyzing beta-glucosidase 1 (PSTG1)
分子名称: Beta-glucosidase, GLYCEROL
著者Yanai, T, Imaizumi, R, Takahashi, Y, Katsumura, E, Yamamoto, M, Nakayama, T, Yamashita, S, Takeshita, K, Sakai, N, Matsuura, H.
登録日2023-05-03
公開日2024-04-10
最終更新日2024-07-17
実験手法X-RAY DIFFRACTION (2.85 Å)
主引用文献Structural insights into a bacterial beta-glucosidase capable of degrading sesaminol triglucoside to produce sesaminol: toward the understanding of the aglycone recognition mechanism by the C-terminal lid domain.
J.Biochem., 174, 2023
5E8D
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BU of 5e8d by Molmil
Crystal structure of human epiregulin in complex with the Fab fragment of murine monoclonal antibody 9E5
分子名称: CHLORIDE ION, GLYCEROL, Proepiregulin, ...
著者Kado, Y, Mizohata, E, Nagatoishi, S, Iijima, M, Shinoda, K, Miyafusa, T, Nakayama, T, Yoshizumi, T, Sugiyama, A, Kawamura, T, Lee, Y.H, Matsumura, H, Doi, H, Fujitani, H, Kodama, T, Shibasaki, Y, Tsumoto, K, Inoue, T.
登録日2015-10-14
公開日2015-12-09
最終更新日2020-02-19
実験手法X-RAY DIFFRACTION (2.5 Å)
主引用文献Epiregulin Recognition Mechanisms by Anti-epiregulin Antibody 9E5: STRUCTURAL, FUNCTIONAL, AND MOLECULAR DYNAMICS SIMULATION ANALYSES
J.Biol.Chem., 291, 2016
7BUR
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Chalcone synthase from Glycine max (L.) Merr (soybean) complexed with naringenin
分子名称: CITRIC ACID, Chalcone synthase 1, NARINGENIN
著者Imaizumi, R, Mameda, R, Takeshita, K, Waki, T, Kubo, H, Sakai, N, Nakata, S, Takahashi, S, Kataoka, K, Yamamoto, M, Yamashita, S, Nakayama, T.
登録日2020-04-08
公開日2020-08-19
最終更新日2023-11-29
実験手法X-RAY DIFFRACTION (1.82 Å)
主引用文献Crystal structure of chalcone synthase, a key enzyme for isoflavonoid biosynthesis in soybean.
Proteins, 2020
7BUS
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Chalcone synthase from Glycine max (L.) Merr (soybean)
分子名称: Chalcone synthase
著者Imaizumi, R, Mameda, R, Takeshita, K, Waki, T, Kubo, H, Sakai, N, Nakata, S, Takahashi, S, Kataoka, K, Yamamoto, M, Yamashita, S, Nakayama, T.
登録日2020-04-08
公開日2020-08-19
最終更新日2023-11-29
実験手法X-RAY DIFFRACTION (2.52 Å)
主引用文献Crystal structure of chalcone synthase, a key enzyme for isoflavonoid biosynthesis in soybean.
Proteins, 2020
8KGA
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SlNDPS1-AtcPT4 Chimera
分子名称: 1,2-ETHANEDIOL, DI(HYDROXYETHYL)ETHER, Dimethylallylcistransferase CPT1, ...
著者Suenaga-Hiromori, M, Ishii, T, Imaizumi, R, Takeshita, K, Yanai, T, Matsuura, H, Sakai, N, Yamaguchi, H, Yanbe, F, Waki, T, Tozawa, Y, Miyagi-Inoue, Y, Yamamoto, M, Kataoka, K, Nakayama, T, Yamashita, S, Takahashi, S.
登録日2023-08-18
公開日2024-08-21
実験手法X-RAY DIFFRACTION (2.182 Å)
主引用文献Biosynthesising various rubber-like polymers by reconstituting prenyltransferases on Hevea rubber particles: molecular and structural bases of the versatile system
To Be Published
8KGB
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SlNDPS1-AtcPT4 Chimera complexed with GSPP, Mg2+, and IPP
分子名称: 3-METHYLBUT-3-ENYL TRIHYDROGEN DIPHOSPHATE, Dimethylallylcistransferase CPT1, chloroplastic,Dehydrodolichyl diphosphate synthase 2, ...
著者Suenaga-Hiromori, M, Ishii, T, Imaizumi, R, Takeshita, K, Yanai, T, Matsuura, H, Sakai, N, Yamaguchi, H, Yanbe, F, Waki, T, Tozawa, Y, Miyagi-Inoue, Y, Yamamoto, M, Kataoka, K, Nakayama, T, Yamashita, S, Takahashi, S.
登録日2023-08-18
公開日2024-08-21
最終更新日2024-10-30
実験手法X-RAY DIFFRACTION (2.32 Å)
主引用文献A versatile system for enzymatic synthesis of natural and unnatural polyisoprenoids on rubber particles
To Be Published
8JRD
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BU of 8jrd by Molmil
Chalcone synthase from Glycine max (L.) Merr (soybean) complexed with naringenin and coenzyme A
分子名称: 1,2-ETHANEDIOL, COENZYME A, DI(HYDROXYETHYL)ETHER, ...
著者Waki, T, Imaizumi, R, Nakata, S, Yanai, T, Takeshita, K, Sakai, N, Kataoka, K, Yamamoto, M, Nakayama, T, Yamashita, S.
登録日2023-06-16
公開日2024-06-19
最終更新日2024-07-17
実験手法X-RAY DIFFRACTION (1.83 Å)
主引用文献Structural insights into catalytic promiscuity of chalcone synthase from Glycine max (L.) Merr.: Coenzyme A-induced alteration of product specificity.
Biochem.Biophys.Res.Commun., 718, 2024
8X36
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Neryl diphosphate synthase from Solanum lycopersicum complexed with DMSAPP, IPP, and magnesium ion (form B)
分子名称: 3-METHYLBUT-3-ENYL TRIHYDROGEN DIPHOSPHATE, DIMETHYLALLYL S-THIOLODIPHOSPHATE, MAGNESIUM ION, ...
著者Imaizumi, R, Matsuura, H, Yanai, T, Takeshita, K, Misawa, S, Yamaguchi, H, Sakai, N, Miyagi-Inoue, Y, Suenaga-Hiromori, M, Kataoka, K, Nakayama, T, Yamamoto, M, Takahashi, S, Yamashita, S.
登録日2023-11-12
公開日2024-02-07
最終更新日2024-10-09
実験手法X-RAY DIFFRACTION (2.28 Å)
主引用文献Structural-Functional Correlations between Unique N-terminal Region and C-terminal Conserved Motif in Short-chain cis-Prenyltransferase from Tomato.
Chembiochem, 25, 2024
8X35
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Neryl diphosphate synthase from Solanum lycopersicum complexed with DMSAPP, IPP, and magnesium ion (form A)
分子名称: 1,2-ETHANEDIOL, 3-METHYLBUT-3-ENYL TRIHYDROGEN DIPHOSPHATE, DI(HYDROXYETHYL)ETHER, ...
著者Imaizumi, R, Matsuura, H, Yanai, T, Takeshita, K, Misawa, S, Yamaguchi, H, Sakai, N, Miyagi-Inoue, Y, Suenaga-Hiromori, M, Kataoka, K, Nakayama, T, Yamamoto, M, Takahashi, S, Yamashita, S.
登録日2023-11-12
公開日2024-02-07
最終更新日2024-10-23
実験手法X-RAY DIFFRACTION (1.92 Å)
主引用文献Structural-Functional Correlations between Unique N-terminal Region and C-terminal Conserved Motif in Short-chain cis-Prenyltransferase from Tomato.
Chembiochem, 25, 2024
8X37
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Neryl diphosphate synthase from Solanum lycopersicum complexed with DMSAPP
分子名称: DIMETHYLALLYL S-THIOLODIPHOSPHATE, MAGNESIUM ION, Neryl-diphosphate synthase 1
著者Imaizumi, R, Matsuura, H, Yanai, T, Takeshita, K, Misawa, S, Yamaguchi, H, Sakai, N, Miyagi-Inoue, Y, Suenaga-Hiromori, M, Kataoka, K, Nakayama, T, Yamamoto, M, Takahashi, S, Yamashita, S.
登録日2023-11-12
公開日2024-02-07
最終更新日2024-04-24
実験手法X-RAY DIFFRACTION (1.98 Å)
主引用文献Structural-Functional Correlations between Unique N-terminal Region and C-terminal Conserved Motif in Short-chain cis-Prenyltransferase from Tomato.
Chembiochem, 25, 2024
5AZ2
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BU of 5az2 by Molmil
Crystal structure of the Fab fragment of 9E5, a murine monoclonal antibody specific for human epiregulin
分子名称: anti-human epiregulin antibody 9E5 Fab heavy chain, anti-human epiregulin antibody 9E5 Fab light chain
著者Kado, Y, Mizohata, E, Nagatoishi, S, Iijima, M, Shinoda, K, Miyafusa, T, Nakayama, T, Yoshizumi, T, Sugiyama, A, Kawamura, T, Lee, Y.H, Matsumura, H, Doi, H, Fujitani, H, Kodama, T, Shibasaki, Y, Tsumoto, K, Inoue, T.
登録日2015-09-16
公開日2015-12-09
最終更新日2020-02-26
実験手法X-RAY DIFFRACTION (1.603 Å)
主引用文献Epiregulin Recognition Mechanisms by Anti-epiregulin Antibody 9E5: STRUCTURAL, FUNCTIONAL, AND MOLECULAR DYNAMICS SIMULATION ANALYSES
J.Biol.Chem., 291, 2016
6JEN
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Structure of Phytolacca americana UGT2 complexed with UDP-2fluoro-glucose and pterostilbene
分子名称: Glycosyltransferase, Pterostilbene, URIDINE-5'-DIPHOSPHATE-2-DEOXY-2-FLUORO-ALPHA-D-GLUCOSE
著者Maharjan, R, Fukuda, Y, Nakayama, T, Hamada, H, Ozaki, S, Inoue, T.
登録日2019-02-06
公開日2020-03-11
最終更新日2023-11-22
実験手法X-RAY DIFFRACTION (2.65 Å)
主引用文献An Ambidextrous Polyphenol GlycosyltransferasePaGT2 fromPhytolacca americana.
Biochemistry, 59, 2020
7VPC
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Neryl diphosphate synthase from Solanum lycopersicum
分子名称: 1,2-ETHANEDIOL, D-MALATE, Neryl-diphosphate synthase 1
著者Imaizumi, R, Misawa, S, Takeshita, K, Sakai, N, Yamamoto, M, Kataoka, K, Nakayama, T, Takahashi, S, Yamashita, S.
登録日2021-10-15
公開日2022-05-18
最終更新日2024-10-23
実験手法X-RAY DIFFRACTION (1.94 Å)
主引用文献Structure-based engineering of a short-chain cis-prenyltransferase to biosynthesize nonnatural all-cis-polyisoprenoids: molecular mechanisms for primer substrate recognition and ultimate product chain-length determination.
Febs J., 289, 2022
6JEL
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Structure of Phytolacca americana apo UGT2
分子名称: Glycosyltransferase
著者Maharjan, R, Fukuda, Y, Nakayama, T, Hamada, H, Ozaki, S, Inoue, T.
登録日2019-02-06
公開日2020-03-11
最終更新日2023-11-22
実験手法X-RAY DIFFRACTION (2.3 Å)
主引用文献An Ambidextrous Polyphenol GlycosyltransferasePaGT2 fromPhytolacca americana.
Biochemistry, 59, 2020
5B2C
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BU of 5b2c by Molmil
Crystal structure of Mumps virus hemagglutinin-neuraminidase
分子名称: 2-acetamido-2-deoxy-beta-D-glucopyranose, HN protein, SULFATE ION
著者Kubota, M, Takeuchi, K, Watanabe, S, Ohno, S, Matsuoka, R, Kohda, D, Hiramatsu, H, Suzuki, Y, Nakayama, T, Terada, T, Shimizu, K, Shimizu, N, Yanagi, Y, Hashiguchi, T.
登録日2016-01-14
公開日2016-09-28
最終更新日2023-11-08
実験手法X-RAY DIFFRACTION (2.238 Å)
主引用文献Trisaccharide containing alpha 2,3-linked sialic acid is a receptor for mumps virus
Proc.Natl.Acad.Sci.USA, 113, 2016
5B2D
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Crystal structure of Mumps virus hemagglutinin-neuraminidase bound to 3-sialyllactose
分子名称: 2-acetamido-2-deoxy-beta-D-glucopyranose, HN protein, N-acetyl-alpha-neuraminic acid-(2-3)-beta-D-galactopyranose-(1-4)-alpha-D-glucopyranose, ...
著者Kubota, M, Takeuchi, K, Watanabe, S, Ohno, S, Matsuoka, R, Kohda, D, Hiramatsu, H, Suzuki, Y, Nakayama, T, Terada, T, Shimizu, K, Shimizu, N, Yanagi, Y, Hashiguchi, T.
登録日2016-01-14
公開日2016-09-28
最終更新日2023-11-08
実験手法X-RAY DIFFRACTION (2.177 Å)
主引用文献Trisaccharide containing alpha 2,3-linked sialic acid is a receptor for mumps virus
Proc.Natl.Acad.Sci.USA, 113, 2016

 

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