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PDB: 17048 results

6XFD
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BU of 6xfd by Molmil
Self-assembly of a 3D DNA crystal lattice (4x5 junction version) containing the J20 immobile Holliday junction
Descriptor: CACODYLATE ION, DNA (5'-D(*GP*AP*GP*CP*AP*GP*AP*CP*GP*TP*G)-3'), DNA (5'-D(*TP*CP*TP*GP*AP*GP*TP*GP*CP*CP*GP*TP*CP*TP*GP*C)-3'), ...
Authors:Simmons, C.R, MacCulloch, T, Stephanopoulos, N, Yan, H.
Deposit date:2020-06-15
Release date:2021-07-14
Last modified:2023-10-18
Method:X-RAY DIFFRACTION (3.101 Å)
Cite:The influence of Holliday junction sequence and dynamics on DNA crystal self-assembly.
Nat Commun, 13, 2022
6LF5
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BU of 6lf5 by Molmil
The solution structure of ShSPI
Descriptor: ShSPI
Authors:Luan, N, Rong, M.Q, Liu, J.X, Lai, R.
Deposit date:2019-11-29
Release date:2020-12-02
Last modified:2023-06-14
Method:SOLUTION NMR
Cite:Identification and Characterization of ShSPI, a Kazal-Type Elastase Inhibitor from the Venom of Scolopendra Hainanum .
Toxins, 11, 2019
6XGJ
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BU of 6xgj by Molmil
Self-assembly of a 3D DNA crystal lattice (4x5 junction version) containing the J32 immobile Holliday junction
Descriptor: CACODYLATE ION, DNA (5'-D(*GP*AP*GP*CP*AP*GP*AP*CP*TP*AP*G)-3'), DNA (5'-D(*TP*CP*TP*GP*AP*GP*TP*GP*GP*AP*GP*TP*CP*TP*GP*C)-3'), ...
Authors:Simmons, C.R, MacCulloch, T, Stephanopoulos, N, Yan, H.
Deposit date:2020-06-17
Release date:2021-07-14
Last modified:2023-10-18
Method:X-RAY DIFFRACTION (3.071 Å)
Cite:The influence of Holliday junction sequence and dynamics on DNA crystal self-assembly.
Nat Commun, 13, 2022
6XQ9
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BU of 6xq9 by Molmil
Receptor for Advanced Glycation End Products VC1 domain in complex with Fragments 1 & 13
Descriptor: 4-(3-hydroxyphenoxy)benzoic acid, 7-methyl-3-phenyl-1H-indole-2-carboxylic acid, ACETATE ION, ...
Authors:Salay, L.E, Kozlyuk, N, Gilston, B.A, Gogliotti, R.D, Christov, P.P, Kim, K, Ovee, M, Waterson, A.G, Chazin, W.J.
Deposit date:2020-07-09
Release date:2021-07-14
Last modified:2023-10-18
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:A fragment-based approach to discovery of Receptor for Advanced Glycation End products inhibitors.
Proteins, 89, 2021
6XFG
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BU of 6xfg by Molmil
Self-assembly of a 3D DNA crystal lattice (4x5 junction version) containing the J23 immobile Holliday junction
Descriptor: CACODYLATE ION, DNA (5'-D(*GP*AP*GP*CP*AP*GP*AP*CP*CP*TP*G)-3'), DNA (5'-D(*TP*CP*TP*GP*AP*GP*TP*GP*GP*GP*GP*TP*CP*TP*GP*C)-3'), ...
Authors:Simmons, C.R, MacCulloch, T, Stephanopoulos, N, Yan, H.
Deposit date:2020-06-15
Release date:2021-07-14
Last modified:2023-10-18
Method:X-RAY DIFFRACTION (3.053 Å)
Cite:The influence of Holliday junction sequence and dynamics on DNA crystal self-assembly.
Nat Commun, 13, 2022
6KVG
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BU of 6kvg by Molmil
The solution structure of human Orc6
Descriptor: Origin recognition complex subunit 6
Authors:Liu, C, Xu, N, You, Y, Zhu, G.
Deposit date:2019-09-04
Release date:2020-09-09
Last modified:2024-05-15
Method:SOLUTION NMR
Cite:Structural basis of DNA replication origin recognition by human Orc6 protein binding with DNA.
Nucleic Acids Res., 48, 2020
6XFW
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BU of 6xfw by Molmil
Self-assembly of a 3D DNA crystal lattice (4x5 junction version) containing the J24 immobile Holliday junction
Descriptor: CACODYLATE ION, DNA (5'-D(*GP*AP*GP*CP*AP*GP*AP*CP*CP*AP*G)-3'), DNA (5'-D(*TP*CP*TP*GP*AP*GP*TP*GP*GP*GP*GP*TP*CP*TP*GP*C)-3'), ...
Authors:Simmons, C.R, MacCulloch, T, Stephanopoulos, N, Yan, H.
Deposit date:2020-06-16
Release date:2021-07-14
Last modified:2023-10-18
Method:X-RAY DIFFRACTION (3.053 Å)
Cite:The influence of Holliday junction sequence and dynamics on DNA crystal self-assembly.
Nat Commun, 13, 2022
6XO6
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BU of 6xo6 by Molmil
Self-assembly of a 3D DNA crystal lattice (4x6 junction version) containing the J28 immobile Holliday junction
Descriptor: CACODYLATE ION, DNA (5'-D(*GP*AP*GP*CP*AP*GP*AP*CP*AP*TP*GP*A)-3'), DNA (5'-D(*TP*CP*TP*GP*AP*GP*TP*GP*TP*GP*TP*CP*TP*GP*C)-3'), ...
Authors:Simmons, C.R, MacCulloch, T, Stephanopoulos, N, Yan, H.
Deposit date:2020-07-06
Release date:2021-07-14
Last modified:2023-10-18
Method:X-RAY DIFFRACTION (3.108 Å)
Cite:The influence of Holliday junction sequence and dynamics on DNA crystal self-assembly.
Nat Commun, 13, 2022
1EJ4
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BU of 1ej4 by Molmil
COCRYSTAL STRUCTURE OF EIF4E/4E-BP1 PEPTIDE
Descriptor: 7N-METHYL-8-HYDROGUANOSINE-5'-DIPHOSPHATE, EUKARYOTIC INITIATION FACTOR 4E, EUKARYOTIC TRANSLATION INITIATION FACTOR 4E BINDING PROTEIN 1
Authors:Marcotrigiano, J, Gingras, A.-C, Sonenberg, N, Burley, S.K.
Deposit date:2000-02-28
Release date:2000-03-15
Last modified:2024-03-06
Method:X-RAY DIFFRACTION (2.25 Å)
Cite:Cap-dependent translation initiation in eukaryotes is regulated by a molecular mimic of eIF4G.
Mol.Cell, 3, 1999
6XQ1
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BU of 6xq1 by Molmil
Receptor for Advanced Glycation End Products VC1 domain in complex with 3-(3-((4-(4-carboxyphenoxy)benzyl)oxy)phenyl)-1H-indole-2-carboxylic acid
Descriptor: 3-[3-({[3-(4-carboxyphenoxy)phenyl]methoxy}methyl)phenyl]-1H-indole-2-carboxylic acid, ACETATE ION, Advanced glycosylation end product-specific receptor, ...
Authors:Salay, L.E, Kozlyuk, N, Gilston, B.A, Gogliotti, R.D, Christov, P.P, Kim, K, Ovee, M, Waterson, A.G, Chazin, W.J.
Deposit date:2020-07-09
Release date:2021-07-14
Last modified:2023-10-18
Method:X-RAY DIFFRACTION (1.51 Å)
Cite:A fragment-based approach to discovery of Receptor for Advanced Glycation End products inhibitors.
Proteins, 89, 2021
1EDW
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BU of 1edw by Molmil
SOLUTION STRUCTURE OF THIRD INTRADISKAL LOOP OF BOVINE RHODOPSIN (RESIDUES 268-293)
Descriptor: RHODOPSIN
Authors:Yeagle, P.L, Salloum, A, Chopra, A, Bhawsar, N, Ali, L.
Deposit date:2000-01-28
Release date:2000-08-09
Last modified:2024-05-22
Method:SOLUTION NMR
Cite:Structures of the intradiskal loops and amino terminus of the G-protein receptor, rhodopsin.
J.Pept.Res., 55, 2000
1EKQ
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BU of 1ekq by Molmil
CRYSTAL STRUCTURE OF HYDROXYETHYLTHIAZOLE KINASE IN R3 SPACE GROUP
Descriptor: HYDROXYETHYLTHIAZOLE KINASE
Authors:Campobasso, N, Mathews, I.I, Begley, T.P, Ealick, S.E.
Deposit date:2000-03-09
Release date:2000-08-09
Last modified:2014-11-12
Method:X-RAY DIFFRACTION (1.5 Å)
Cite:Crystal structure of 4-methyl-5-beta-hydroxyethylthiazole kinase from Bacillus subtilis at 1.5 A resolution.
Biochemistry, 39, 2000
1ET0
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BU of 1et0 by Molmil
CRYSTAL STRUCTURE OF AMINODEOXYCHORISMATE LYASE FROM ESCHERICHIA COLI
Descriptor: 4-AMINO-4-DEOXYCHORISMATE LYASE, PYRIDOXAL-5'-PHOSPHATE
Authors:Nakai, T, Mizutani, H, Miyahara, I, Hirotsu, K, Takeda, S, Jhee, K.H, Yoshimura, T, Esaki, N.
Deposit date:2000-04-12
Release date:2000-07-19
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Three-dimensional structure of 4-amino-4-deoxychorismate lyase from Escherichia coli.
J.Biochem.(Tokyo), 128, 2000
6LYY
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BU of 6lyy by Molmil
Cryo-EM structure of the human MCT1/Basigin-2 complex in the presence of anti-cancer drug candidate AZD3965 in the outward-open conformation.
Descriptor: 3-methyl-5-[[(4~{R})-4-methyl-4-oxidanyl-1,2-oxazolidin-2-yl]carbonyl]-6-[[5-methyl-3-(trifluoromethyl)-1~{H}-pyrazol-4-yl]methyl]-1-propan-2-yl-thieno[2,3-d]pyrimidine-2,4-dione, Basigin, Monocarboxylate transporter 1
Authors:Wang, N, Jiang, X, Zhang, S, Zhu, A, Yuan, Y, Lei, J, Yan, C.
Deposit date:2020-02-16
Release date:2020-12-23
Last modified:2024-03-27
Method:ELECTRON MICROSCOPY (3.2 Å)
Cite:Structural basis of human monocarboxylate transporter 1 inhibition by anti-cancer drug candidates.
Cell, 184, 2021
6LS4
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BU of 6ls4 by Molmil
A novel anti-tumor agent S-40 in complex with tubulin
Descriptor: 2-(N-MORPHOLINO)-ETHANESULFONIC ACID, 3-[(4-cyclopropylphenyl)sulfonylamino]-4-methyl-N-(pyridin-3-ylmethyl)benzamide, GLYCEROL, ...
Authors:Du, T, Lin, S, Ji, M, Xue, N, Liu, Y, Zhang, K, Lu, D, Chen, X, Xu, H.
Deposit date:2020-01-17
Release date:2021-01-20
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:A novel orally active microtubule destabilizing agent S-40 targets the colchicine-binding site and shows potent antitumor activity.
Cancer Lett., 495, 2020
1EDX
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BU of 1edx by Molmil
SOLUTION STRUCTURE OF AMINO TERMINUS OF BOVINE RHODOPSIN (RESIDUES 1-40)
Descriptor: RHODOPSIN
Authors:Yeagle, P.L, Salloum, A, Chopra, A, Bhawsar, N, Ali, L.
Deposit date:2000-01-28
Release date:2000-08-09
Last modified:2024-05-22
Method:SOLUTION NMR
Cite:Structures of the intradiskal loops and amino terminus of the G-protein receptor, rhodopsin.
J.Pept.Res., 55, 2000
6Y6K
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BU of 6y6k by Molmil
Cryo-EM structure of a Phenuiviridae L protein
Descriptor: MAGNESIUM ION, RNA-dependent RNA polymerase
Authors:Vogel, D, Thorkelsson, S.R, Quemin, E, Meier, K, Kouba, T, Gogrefe, N, Busch, C, Reindl, S, Guenther, S, Cusack, S, Gruenewald, K, Rosenthal, M.
Deposit date:2020-02-26
Release date:2020-04-08
Last modified:2024-05-22
Method:ELECTRON MICROSCOPY (3.78 Å)
Cite:Structural and functional characterization of the severe fever with thrombocytopenia syndrome virus L protein.
Nucleic Acids Res., 48, 2020
6Y16
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BU of 6y16 by Molmil
CRYSTAL STRUCTURE OF TMARGBP DOMAIN 1 IN COMPLEX WITH THE GUANIDINIUM ION
Descriptor: 1,2-ETHANEDIOL, Amino acid ABC transporter, periplasmic amino acid-binding protein,Amino acid ABC transporter, ...
Authors:Ruggiero, A, Balasco, N, Smaldone, G, Graziano, G, Vitagliano, L.
Deposit date:2020-02-11
Release date:2020-07-15
Last modified:2024-01-24
Method:X-RAY DIFFRACTION (1.7 Å)
Cite:Guanidinium binding to proteins: The intriguing effects on the D1 and D2 domains of Thermotoga maritima Arginine Binding Protein and a comprehensive analysis of the Protein Data Bank.
Int.J.Biol.Macromol., 163, 2020
6M5S
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BU of 6m5s by Molmil
The coordinates of the apo hexameric terminase complex
Descriptor: Tripartite terminase subunit 1, Tripartite terminase subunit 2, Tripartite terminase subunit 3, ...
Authors:Yang, Y.X, Yang, P, Wang, N, Chen, Z.H, Zhou, Z.H, Rao, Z.H, Wang, X.X.
Deposit date:2020-03-11
Release date:2020-10-28
Last modified:2024-03-27
Method:ELECTRON MICROSCOPY (3.9 Å)
Cite:Architecture of the herpesvirus genome-packaging complex and implications for DNA translocation.
Protein Cell, 11, 2020
6M8F
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BU of 6m8f by Molmil
Engineered sperm whale myoglobin-based carbene transferase
Descriptor: Myoglobin, PROTOPORPHYRIN IX CONTAINING FE, SULFATE ION, ...
Authors:Bacik, J.P, Ando, N, Fasan, R.
Deposit date:2018-08-21
Release date:2019-01-23
Last modified:2023-10-11
Method:X-RAY DIFFRACTION (1.1 Å)
Cite:Origin of high stereocontrol in olefin cyclopropanation catalyzed by an engineered carbene transferase.
Acs Catalysis, 9, 2019
1EJ5
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BU of 1ej5 by Molmil
SOLUTION STRUCTURE OF THE AUTOINHIBITED CONFORMATION OF WASP
Descriptor: WISKOTT-ALDRICH SYNDROME PROTEIN
Authors:Kim, A.S, Kakalis, L.T, Abdul-Manan, N, Liu, G.A, Rosen, M.K.
Deposit date:2000-02-29
Release date:2000-04-05
Last modified:2024-05-22
Method:SOLUTION NMR
Cite:Autoinhibition and activation mechanisms of the Wiskott-Aldrich syndrome protein.
Nature, 404, 2000
6M49
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BU of 6m49 by Molmil
cryo-EM structure of Scap/Insig complex in the present of 25-hydroxyl cholesterol.
Descriptor: 25-HYDROXYCHOLESTEROL, Insulin-induced gene 2 protein, Sterol regulatory element-binding protein cleavage-activating protein,Sterol regulatory element-binding protein cleavage-activating protein
Authors:Yan, R, Cao, P, Song, W, Qian, H, Du, X, Coates, H.W, Zhao, X, Li, Y, Gao, S, Gong, X, Liu, X, Sui, J, Lei, J, Yang, H, Brown, A.J, Zhou, Q, Yan, C, Yan, N.
Deposit date:2020-03-06
Release date:2021-01-20
Last modified:2024-03-27
Method:ELECTRON MICROSCOPY (3.7 Å)
Cite:A structure of human Scap bound to Insig-2 suggests how their interaction is regulated by sterols.
Science, 371, 2021
6LS8
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BU of 6ls8 by Molmil
The monomeric structure of G80A/H81A/H82A myoglobin
Descriptor: Myoglobin, PROTOPORPHYRIN IX CONTAINING FE
Authors:Nagao, S, Suda, A, Kobayashi, H, Shibata, N, Higuchi, Y, Hirota, S.
Deposit date:2020-01-17
Release date:2020-05-06
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Thermodynamic Control of Domain Swapping by Modulating the Helical Propensity in the Hinge Region of Myoglobin.
Chem Asian J, 15, 2020
6M5U
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BU of 6m5u by Molmil
The coordinates of the monomeric terminase complex in the presence of the ADP-BeF3
Descriptor: ADENOSINE-5'-DIPHOSPHATE, BERYLLIUM TRIFLUORIDE ION, MAGNESIUM ION, ...
Authors:Yang, Y.X, Yang, P, Wang, N, Zhu, L, Zhou, Z.H, Rao, Z.H, Wang, X.X.
Deposit date:2020-03-11
Release date:2020-10-28
Last modified:2024-03-27
Method:ELECTRON MICROSCOPY (3.8 Å)
Cite:Architecture of the herpesvirus genome-packaging complex and implications for DNA translocation.
Protein Cell, 11, 2020
1EDV
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BU of 1edv by Molmil
SOLUTION STRUCTURE OF 2ND INTRADISKAL LOOP OF BOVINE RHODOPSIN (RESIDUES 172-205)
Descriptor: RHODOPSIN
Authors:Yeagle, P.L, Salloum, A, Chopra, A, Bhawsar, N, Ali, L.
Deposit date:2000-01-28
Release date:2000-08-09
Last modified:2024-05-22
Method:SOLUTION NMR
Cite:Structures of the intradiskal loops and amino terminus of the G-protein receptor, rhodopsin.
J.Pept.Res., 55, 2000

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