Loading
PDBj
MenuPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help
PDB: 17068 results

4YCP
DownloadVisualize
BU of 4ycp by Molmil
E. coli dihydrouridine synthase C (DusC) in complex with tRNATrp
Descriptor: FLAVIN MONONUCLEOTIDE, MAGNESIUM ION, SULFATE ION, ...
Authors:Byrne, R.T, Jenkins, H.T, Peters, D.T, Whelan, F, Stowell, J, Aziz, N, Kasatsky, P, Rodnina, M.V, Koonin, E.V, Konevega, A.L, Antson, A.A.
Deposit date:2015-02-20
Release date:2015-04-22
Last modified:2024-01-10
Method:X-RAY DIFFRACTION (2.55 Å)
Cite:Major reorientation of tRNA substrates defines specificity of dihydrouridine synthases.
Proc.Natl.Acad.Sci.USA, 112, 2015
8IYR
DownloadVisualize
BU of 8iyr by Molmil
The cryo-EM structure of cellobiose phosphorylase from Clostridium thermocellum in complex with phosphate
Descriptor: Cellobiose phosphorylase, PHOSPHATE ION
Authors:Iriya, S, Kuga, T, Sunagawa, N, Igarashi, K.
Deposit date:2023-04-05
Release date:2024-04-10
Method:ELECTRON MICROSCOPY (2.6 Å)
Cite:The cryo-EM structure of cellobiose phosphorylase from Clostridium thermocellum in complex with phosphate
To Be Published
8J59
DownloadVisualize
BU of 8j59 by Molmil
The structure of a novel thermophilic-like old yellow enzyme from Aspergillus flavus-AfOYE1
Descriptor: 1,2-ETHANEDIOL, 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL, CHLORIDE ION, ...
Authors:Li, N, Wang, Y.
Deposit date:2023-04-21
Release date:2024-04-24
Method:X-RAY DIFFRACTION (1.55 Å)
Cite:The structure of a novel thermophilic-like old yellow enzyme from Aspergillus flavus-AfOYE1
To Be Published
8IYP
DownloadVisualize
BU of 8iyp by Molmil
Crystal structure of serine palmitoyltransferase soaked in 190 mM D-serine solution
Descriptor: 1,2-ETHANEDIOL, Serine palmitoyltransferase, [3-HYDROXY-2-METHYL-5-PHOSPHONOOXYMETHYL-PYRIDIN-4-YLMETHYL]-SERINE
Authors:Takahashi, A, Murakami, T, Katayama, A, Miyahara, I, Kamiya, N, Ikushiro, H, Yano, T.
Deposit date:2023-04-05
Release date:2024-04-10
Method:X-RAY DIFFRACTION (1.651 Å)
Cite:Crystal structure of Serine Palmitoyltransferase from Sphingobacterium multivorum
To Be Published
6FDD
DownloadVisualize
BU of 6fdd by Molmil
Crystal Structure of the HHD2 Domain of Whirlin
Descriptor: SULFATE ION, Whirlin
Authors:Delhommel, F, Cordier, F, Saul, F, Haouz, A, Wolff, N.
Deposit date:2017-12-22
Release date:2018-08-08
Last modified:2018-10-31
Method:X-RAY DIFFRACTION (1.75 Å)
Cite:Structural plasticity of the HHD2 domain of whirlin.
FEBS J., 285, 2018
4YGW
DownloadVisualize
BU of 4ygw by Molmil
RNase S in complex with stabilized S peptide
Descriptor: 1-hydroxypropan-2-one, Ribonuclease A C2, S-peptide: ACE-LYS-GLU-THR-ALA-ALA-HCS-LYS-PHE-GLU-HCS-GLN-HIS-MET-ASP-SER, ...
Authors:Assem, N, Ferreira, D, Wolan, D.W, Dawson, P.E.
Deposit date:2015-02-26
Release date:2015-07-01
Last modified:2024-04-03
Method:X-RAY DIFFRACTION (2.18 Å)
Cite:Acetone-Linked Peptides: A Convergent Approach for Peptide Macrocyclization and Labeling.
Angew.Chem.Int.Ed.Engl., 54, 2015
6FEJ
DownloadVisualize
BU of 6fej by Molmil
Anabaena Apo-C-Terminal Domain Homolog Protein
Descriptor: All4940 protein, UREA
Authors:Harris, D, Wilson, A, Muzzopappa, F, Kirilovsky, D, Adir, N.
Deposit date:2018-01-02
Release date:2018-07-18
Last modified:2024-01-17
Method:X-RAY DIFFRACTION (2.75 Å)
Cite:Structural rearrangements in the C-terminal domain homolog of Orange Carotenoid Protein are crucial for carotenoid transfer.
Commun Biol, 1, 2018
6FFB
DownloadVisualize
BU of 6ffb by Molmil
17beta-hydroxysteroid dehydrogenase 14 variant S205 - mutant Q148A - in complex with a nonsteroidal inhibitor
Descriptor: 17-beta-hydroxysteroid dehydrogenase 14, NICOTINAMIDE-ADENINE-DINUCLEOTIDE, SODIUM ION, ...
Authors:Bertoletti, N, Heine, A, Klebe, G, Marchais-Oberwinkler, S.
Deposit date:2018-01-05
Release date:2019-01-30
Last modified:2024-01-17
Method:X-RAY DIFFRACTION (1.65 Å)
Cite:Mutational and structural studies uncover crucial amino acids determining activity and stability of 17 beta-HSD14.
J.Steroid Biochem.Mol.Biol., 189, 2019
8JFV
DownloadVisualize
BU of 8jfv by Molmil
Crystal structure of Catabolite repressor acivator from E. coli in complex with sulisobenzone
Descriptor: 1,2-ETHANEDIOL, 2-methoxy-4-oxidanyl-5-(phenylcarbonyl)benzenesulfonic acid, 4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID, ...
Authors:Neetu, N, Sharma, M, Mahto, J.K, Kumar, P.
Deposit date:2023-05-19
Release date:2024-04-24
Method:X-RAY DIFFRACTION (3.05 Å)
Cite:Sulisobenzone is a potent inhibitor of the global transcription factor Cra.
J.Struct.Biol., 215, 2023
7QBS
DownloadVisualize
BU of 7qbs by Molmil
B12-dependent radical SAM methyltransferase, Mmp10 with [4Fe-4S] cluster, cobalamin, S-adenosyl-L-methionine, and peptide bound.
Descriptor: CO-METHYLCOBALAMIN, FE (III) ION, IRON/SULFUR CLUSTER, ...
Authors:Bernardo-Garcia, N, Fyfe, C.D, Chavas, L.M.G, Legrand, P, Benjdia, A, Berteau, O.
Deposit date:2021-11-19
Release date:2022-02-02
Last modified:2024-06-19
Method:X-RAY DIFFRACTION (2.327 Å)
Cite:Crystallographic snapshots of a B 12 -dependent radical SAM methyltransferase.
Nature, 602, 2022
4YFA
DownloadVisualize
BU of 4yfa by Molmil
Structure of N-acylhomoserine lactone acylase MacQ in complex with decanoic acid
Descriptor: DECANOIC ACID, Protein related to penicillin acylase
Authors:Yasutake, Y, Kusada, H, Kimura, N.
Deposit date:2015-02-25
Release date:2016-03-02
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Bifunctional quorum-quenching and antibiotic-acylase MacQ forms a 170-kDa capsule-shaped molecule containing spacer polypeptides
Sci Rep, 7, 2017
6FDH
DownloadVisualize
BU of 6fdh by Molmil
Structure of H. salinarum RosR (vng0258) grown from KCl
Descriptor: CHLORIDE ION, DNA binding protein, SULFATE ION
Authors:Shaanan, B, Kutnowski, N.
Deposit date:2017-12-23
Release date:2018-08-22
Last modified:2024-05-01
Method:X-RAY DIFFRACTION (1.85 Å)
Cite:The 3-D structure of VNG0258H/RosR - A haloarchaeal DNA-binding protein in its ionic shell.
J. Struct. Biol., 204, 2018
7QGI
DownloadVisualize
BU of 7qgi by Molmil
Crystal structure of SARS-CoV-2 NSP14 in the absence of NSP10
Descriptor: PHOSPHATE ION, Proofreading exoribonuclease nsp14, ZINC ION
Authors:Newman, J.A, Imprachim, N, Yosaatmadja, Y, Gileadi, O.
Deposit date:2021-12-08
Release date:2022-01-26
Last modified:2024-02-07
Method:X-RAY DIFFRACTION (1.65 Å)
Cite:Crystal structures and fragment screening of SARS-CoV-2 NSP14 reveal details of exoribonuclease activation and mRNA capping and provide starting points for antiviral drug development.
Nucleic Acids Res., 51, 2023
8JJ3
DownloadVisualize
BU of 8jj3 by Molmil
Cryo-EM structure of nanodisc (PE:PS:PC) reconstituted GLIC at pH 2.5
Descriptor: 1,2-dioleoyl-sn-glycero-3-phosphoethanolamine, CHLORIDE ION, Proton-gated ion channel
Authors:Bharambe, N, Li, Z, Basak, S.
Deposit date:2023-05-29
Release date:2024-04-17
Method:ELECTRON MICROSCOPY (2.6476 Å)
Cite:Cryo-EM structures of prokaryotic ligand-gated ion channel GLIC provide insights into gating in a lipid environment.
Nat Commun, 15, 2024
7QIF
DownloadVisualize
BU of 7qif by Molmil
Crystal structure of SARS-CoV-2 NSP14 in complex with 7MeGpppG.
Descriptor: 7-METHYL-GUANOSINE-5'-TRIPHOSPHATE-5'-GUANOSINE, PHOSPHATE ION, Proofreading exoribonuclease nsp14, ...
Authors:Newman, J.A, Imprachim, N, Yosaatmadja, Y, Gileadi, O.
Deposit date:2021-12-14
Release date:2022-02-02
Last modified:2024-02-07
Method:X-RAY DIFFRACTION (2.53 Å)
Cite:Crystal structures and fragment screening of SARS-CoV-2 NSP14 reveal details of exoribonuclease activation and mRNA capping and provide starting points for antiviral drug development.
Nucleic Acids Res., 51, 2023
4YS3
DownloadVisualize
BU of 4ys3 by Molmil
Nucleosome disassembly by RSC and SWI/SNF is enhanced by H3 acetylation near the nucleosome dyad axis
Descriptor: DNA (147-MER), Histone H2A, Histone H2B 1.1, ...
Authors:Dechassa, M.L, Luger, K, Chatterjee, N, North, J.A, Manohar, M, Prasad, R, Ottessen, J.J, Poirier, M.G, Bartholomew, B.
Deposit date:2015-03-16
Release date:2015-10-14
Last modified:2023-11-15
Method:X-RAY DIFFRACTION (3 Å)
Cite:Histone Acetylation near the Nucleosome Dyad Axis Enhances Nucleosome Disassembly by RSC and SWI/SNF.
Mol.Cell.Biol., 35, 2015
8IYT
DownloadVisualize
BU of 8iyt by Molmil
Crystal Structure of Serine Palmitoyltransferase complexed with D-methylserine
Descriptor: (2~{R})-2-methyl-2-[[2-methyl-3-oxidanyl-5-(phosphonooxymethyl)pyridin-4-yl]methylamino]-3-oxidanyl-propanoic acid, 1,2-ETHANEDIOL, Serine palmitoyltransferase
Authors:Takahashi, A, Murakami, T, Katayama, A, Miyahara, I, Kamiya, N, Ikushiro, H, Yano, T.
Deposit date:2023-04-06
Release date:2024-04-10
Method:X-RAY DIFFRACTION (1.7 Å)
Cite:Crystal structure of Serine Palmitoyltransferase from Sphingobacterium multivorum
To Be Published
8J4G
DownloadVisualize
BU of 8j4g by Molmil
Crystal structure of 11JD mutant-I62N
Descriptor: Beta-2-microglobulin, MHC class I antigen, peptide of AIV
Authors:Tang, Z, Zhang, N.
Deposit date:2023-04-19
Release date:2024-04-24
Method:X-RAY DIFFRACTION (2.49 Å)
Cite:Structure of duck MHC 11JD mutant-I62N
To Be Published
6FAQ
DownloadVisualize
BU of 6faq by Molmil
Structure of H. salinarum RosR (vng0258) grown from KBr
Descriptor: BROMIDE ION, DNA binding protein, SULFATE ION
Authors:Shaanan, B, Kutnowski, N.
Deposit date:2017-12-16
Release date:2018-08-22
Last modified:2024-05-01
Method:X-RAY DIFFRACTION (1.95 Å)
Cite:The 3-D structure of VNG0258H/RosR - A haloarchaeal DNA-binding protein in its ionic shell.
J. Struct. Biol., 204, 2018
8JFF
DownloadVisualize
BU of 8jff by Molmil
Crystal structure of Catabolite repressor acivator from E. coli in complex with HEPES
Descriptor: 4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID, Catabolite repressor/activator
Authors:Neetu, N, Katiki, M, Kumar, P.
Deposit date:2023-05-18
Release date:2024-04-24
Method:X-RAY DIFFRACTION (2.89 Å)
Cite:Sulisobenzone is a potent inhibitor of the global transcription factor Cra.
J.Struct.Biol., 215, 2023
8J2O
DownloadVisualize
BU of 8j2o by Molmil
Crystal Structure of Human Carbonic Anhydrase II In-complex with Acetohexamide at 2.6 A Resolution
Descriptor: 1-cyclohexyl-3-(4-ethanoylphenyl)sulfonyl-urea, Carbonic anhydrase 2, SULFATE ION, ...
Authors:Rasheed, S, Huda, N, Choudhary, M.I.
Deposit date:2023-04-14
Release date:2024-04-24
Method:X-RAY DIFFRACTION (2.6 Å)
Cite:Crystal Structure of Human Carbonic Anhydrase II In-complex with Acetohexamide at 2.6 A Resolution
To Be Published
8S9B
DownloadVisualize
BU of 8s9b by Molmil
Cryo-EM structure of Nav1.7 with LCM
Descriptor: 1,2-DIOLEOYL-SN-GLYCERO-3-PHOSPHOCHOLINE, 1-O-OCTADECYL-SN-GLYCERO-3-PHOSPHOCHOLINE, 2-acetamido-2-deoxy-beta-D-glucopyranose, ...
Authors:Fan, X, Huang, J, Yan, N.
Deposit date:2023-03-27
Release date:2023-08-30
Method:ELECTRON MICROSCOPY (2.9 Å)
Cite:Structural mapping of Na v 1.7 antagonists.
Nat Commun, 14, 2023
6F4I
DownloadVisualize
BU of 6f4i by Molmil
Crystal structure of Drosophila melanogaster SNF
Descriptor: U1 small nuclear ribonucleoprotein A
Authors:Weber, G, Holton, N, Hall, K.B, DeKoster, G, Wahl, M.C.
Deposit date:2017-11-29
Release date:2018-06-20
Last modified:2024-01-17
Method:X-RAY DIFFRACTION (1.49 Å)
Cite:Molecular principles underlying dual RNA specificity in the Drosophila SNF protein.
Nat Commun, 9, 2018
1WFQ
DownloadVisualize
BU of 1wfq by Molmil
Solution structure of the first cold-shock domain of the human KIAA0885 protein (UNR protein)
Descriptor: UNR protein
Authors:Goroncy, A.K, Kigawa, T, Koshiba, S, Tomizawa, T, Kobayashi, N, Tochio, N, Inoue, M, Yokoyama, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2004-05-26
Release date:2004-11-26
Last modified:2024-05-01
Method:SOLUTION NMR
Cite:The NMR solution structures of the five constituent cold-shock domains (CSD) of the human UNR (upstream of N-ras) protein.
J.Struct.Funct.Genom., 11, 2010
8S9C
DownloadVisualize
BU of 8s9c by Molmil
Cryo-EM structure of Nav1.7 with CBZ
Descriptor: 1,2-DIOLEOYL-SN-GLYCERO-3-PHOSPHOCHOLINE, 1-O-OCTADECYL-SN-GLYCERO-3-PHOSPHOCHOLINE, 2-acetamido-2-deoxy-beta-D-glucopyranose, ...
Authors:Fan, X, Huang, J, Yan, N.
Deposit date:2023-03-27
Release date:2023-08-30
Method:ELECTRON MICROSCOPY (3.2 Å)
Cite:Structural mapping of Na v 1.7 antagonists.
Nat Commun, 14, 2023

224201

數據於2024-08-28公開中

PDB statisticsPDBj update infoContact PDBjnumon