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PDB: 499 results

6Y50
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BU of 6y50 by Molmil
5'domain of human 17S U2 snRNP
Descriptor: HIV Tat-specific factor 1, PHD finger-like domain-containing protein 5A, Probable ATP-dependent RNA helicase DDX46, ...
Authors:Zhang, Z, Will, C.L, Bertram, K, Luehrmann, R, Stark, H.
Deposit date:2020-02-24
Release date:2020-07-01
Last modified:2024-05-22
Method:ELECTRON MICROSCOPY (4.1 Å)
Cite:Molecular architecture of the human 17S U2 snRNP.
Nature, 583, 2020
7QH4
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BU of 7qh4 by Molmil
Structure of the B. subtilis disome - collided 70S ribosome
Descriptor: 16S rRNA, 23S rRNA, 30S ribosomal protein S10, ...
Authors:Kratzat, H, Buschauer, R, Berninghausen, O, Beckmann, R.
Deposit date:2021-12-10
Release date:2022-03-16
Last modified:2024-07-17
Method:ELECTRON MICROSCOPY (5.45 Å)
Cite:Ribosome collisions induce mRNA cleavage and ribosome rescue in bacteria.
Nature, 603, 2022
7QGH
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BU of 7qgh by Molmil
Structure of the E. coli disome - collided 70S ribosome
Descriptor: 16S rRNA, 23S rRNA, 30S ribosomal protein S1, ...
Authors:Kratzat, H, Buschauer, R, Berninghausen, O, Beckmann, R.
Deposit date:2021-12-08
Release date:2022-03-16
Last modified:2022-03-30
Method:ELECTRON MICROSCOPY (4.48 Å)
Cite:Ribosome collisions induce mRNA cleavage and ribosome rescue in bacteria.
Nature, 603, 2022
7QGU
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BU of 7qgu by Molmil
Structure of the B. subtilis disome - stalled 70S ribosome
Descriptor: 16S rRNA, 23S rRNA, 30S ribosomal protein S10, ...
Authors:Kratzat, H, Buschauer, R, Berninghausen, O, Beckmann, R.
Deposit date:2021-12-10
Release date:2022-03-16
Last modified:2022-03-30
Method:ELECTRON MICROSCOPY (4.75 Å)
Cite:Ribosome collisions induce mRNA cleavage and ribosome rescue in bacteria.
Nature, 603, 2022
7QG8
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BU of 7qg8 by Molmil
Structure of the collided E. coli disome - VemP-stalled 70S ribosome
Descriptor: 16S rRNA, 23S rRNA, 30S ribosomal protein S10, ...
Authors:Kratzat, H, Buschauer, R, Berninghausen, O, Beckmann, R.
Deposit date:2021-12-07
Release date:2022-03-16
Last modified:2022-03-30
Method:ELECTRON MICROSCOPY (3.97 Å)
Cite:Ribosome collisions induce mRNA cleavage and ribosome rescue in bacteria.
Nature, 603, 2022
3J25
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BU of 3j25 by Molmil
Structural basis for TetM-mediated tetracycline resistance
Descriptor: PHOSPHOMETHYLPHOSPHONIC ACID GUANYLATE ESTER, Tetracycline resistance protein tetM
Authors:Doenhoefer, A, Franckenberg, S, Wickles, S, Berninghausen, O, Beckmann, R, Wilson, D.N.
Deposit date:2012-08-22
Release date:2012-10-17
Last modified:2024-02-21
Method:ELECTRON MICROSCOPY (7.2 Å)
Cite:Structural basis for TetM-mediated tetracycline resistance.
Proc.Natl.Acad.Sci.USA, 109, 2012
7QGN
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BU of 7qgn by Molmil
Structure of the SmrB-bound E. coli disome - stalled 70S ribosome
Descriptor: 16S rRNA, 23S rRNA, 30S ribosomal protein S10, ...
Authors:Kratzat, H, Buschauer, R, Berninghausen, O, Beckmann, R.
Deposit date:2021-12-09
Release date:2022-04-27
Method:ELECTRON MICROSCOPY (3.37 Å)
Cite:Ribosome collisions induce mRNA cleavage and ribosome rescue in bacteria.
Nature, 603, 2022
4IXV
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BU of 4ixv by Molmil
Crystal structure of human Arginase-2 complexed with inhibitor 2d: {(5R)-5-amino-5-carboxy-5-[1-(4-chlorobenzyl)piperidin-4-yl]pentyl}(trihydroxy)borate(1-)
Descriptor: Arginase-2, mitochondrial, BENZAMIDINE, ...
Authors:Cousido-Siah, A, Mitschler, A, Ruiz, F.X, Whitehouse, D, Beckett, P, Van Zandt, M.C, Ji, M.K, Ryder, T, Jagdmann, R, Andreoli, M, Olczak, J, Mazur, M, Czestkowski, W, Piotrowska, W, Schroeter, H, Golebiowski, A, Podjarny, A.
Deposit date:2013-01-28
Release date:2013-12-11
Last modified:2023-09-20
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Synthesis of quaternary alpha-amino acid-based arginase inhibitors via the Ugi reaction.
Bioorg.Med.Chem.Lett., 23, 2013
7QGR
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BU of 7qgr by Molmil
Structure of the SmrB-bound E. coli disome - collided 70S ribosome
Descriptor: 16S rRNA, 23S rRNA, 30S ribosomal protein S1, ...
Authors:Kratzat, H, Buschauer, R, Berninghausen, O, Beckmann, R.
Deposit date:2021-12-09
Release date:2022-06-22
Method:ELECTRON MICROSCOPY (5.7 Å)
Cite:Ribosome collisions induce mRNA cleavage and ribosome rescue in bacteria.
Nature, 603, 2022
6R7L
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BU of 6r7l by Molmil
Ribosome-bound SecYEG translocon in a nanodisc
Descriptor: Protein translocase subunit SecY, SecE,Protein translocase subunit SecE,Protein translocase subunit SecE,Protein translocase subunit SecE, SecG
Authors:Kater, L, Beckmann, R, Kedrov, A.
Deposit date:2019-03-29
Release date:2019-08-07
Last modified:2024-05-22
Method:ELECTRON MICROSCOPY (6 Å)
Cite:Partially inserted nascent chain unzips the lateral gate of the Sec translocon.
Embo Rep., 20, 2019
1GQ8
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BU of 1gq8 by Molmil
Pectin methylesterase from Carrot
Descriptor: CACODYLATE ION, PECTINESTERASE
Authors:Johansson, K, El-Ahmad, M, Friemann, R, Jornvall, H, Markovic, O, Eklund, H.
Deposit date:2001-11-20
Release date:2002-04-18
Last modified:2023-12-13
Method:X-RAY DIFFRACTION (1.75 Å)
Cite:Crystal Structure of Plant Pectin Methylesterase
FEBS Lett., 514, 2002
1V1D
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BU of 1v1d by Molmil
Nucleophilic and General Acid Catalysis at Physiological pH by a Designed Miniature Esterase
Descriptor: PANCREATIC HORMONE
Authors:Nicoll, A, Allemann, R.K.
Deposit date:2004-04-14
Release date:2005-04-14
Last modified:2024-05-15
Method:SOLUTION NMR
Cite:Nucleophilic and General Acid Catalysis at Physiological Ph by a Designed Miniature Esterase
Org.Biomol.Chem., 2, 2004
1YSH
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BU of 1ysh by Molmil
Localization and dynamic behavior of ribosomal protein L30e
Descriptor: 40S RIBOSOMAL PROTEIN S13, RNA (101-MER), RNA (28-MER), ...
Authors:Halic, M, Becker, T, Frank, J, Spahn, C.M, Beckmann, R.
Deposit date:2005-02-08
Release date:2005-07-05
Last modified:2019-12-18
Method:ELECTRON MICROSCOPY (9.5 Å)
Cite:Localization and dynamic behavior of ribosomal protein L30e
Nat.Struct.Mol.Biol., 12, 2005
2YN8
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BU of 2yn8 by Molmil
ephB4 kinase domain inhibitor complex
Descriptor: EPHRIN TYPE-B RECEPTOR 4, STAUROSPORINE
Authors:Read, J, Brassington, C.A, Overmann, R.
Deposit date:2012-10-13
Release date:2013-10-23
Last modified:2024-05-08
Method:X-RAY DIFFRACTION (2.11 Å)
Cite:Stability and Solubility Engineering of the Ephb4 Tyrosine Kinase Catalytic Domain Using a Rationally Designed Synthetic Library.
Protein Eng.Des.Sel., 26, 2013
1JQH
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BU of 1jqh by Molmil
IGF-1 receptor kinase domain
Descriptor: IGF-1 receptor kinase, MAGNESIUM ION, PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER, ...
Authors:Pautsch, A, Zoephel, A, Ahorn, H, Spevak, W, Hauptmann, R, Nar, H.
Deposit date:2001-08-07
Release date:2002-04-19
Last modified:2021-11-10
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Crystal structure of bisphosphorylated IGF-1 receptor kinase: insight into domain movements upon kinase activation.
Structure, 9, 2001
1JAT
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BU of 1jat by Molmil
Mms2/Ubc13 Ubiquitin Conjugating Enzyme Complex
Descriptor: Ubiquitin-Conjugating Enzyme E2-17.5 KDA, Ubiquitin-Conjugating Enzyme Variant Mms2
Authors:VanDemark, A.P, Hofmann, R.M, Tsui, C, Pickart, C.M, Wolberger, C.
Deposit date:2001-05-31
Release date:2001-06-20
Last modified:2024-02-07
Method:X-RAY DIFFRACTION (1.6 Å)
Cite:Molecular insights into polyubiquitin chain assembly: crystal structure of the Mms2/Ubc13 heterodimer.
Cell(Cambridge,Mass.), 105, 2001
1JBB
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BU of 1jbb by Molmil
Ubiquitin Conjugating Enzyme, Ubc13
Descriptor: ubiquitin conjugating enzyme E2-17.5 KDA
Authors:VanDemark, A.P, Hofmann, R.M, Tsui, C, Pickart, C.M, Wolberger, C.
Deposit date:2001-06-03
Release date:2001-06-20
Last modified:2023-08-16
Method:X-RAY DIFFRACTION (2 Å)
Cite:Molecular insights into polyubiquitin chain assembly: crystal structure of the Mms2/Ubc13 heterodimer.
Cell(Cambridge,Mass.), 105, 2001
1JFU
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BU of 1jfu by Molmil
CRYSTAL STRUCTURE OF THE SOLUBLE DOMAIN OF TLPA FROM BRADYRHIZOBIUM JAPONICUM
Descriptor: THIOL:DISULFIDE INTERCHANGE PROTEIN TLPA
Authors:Capitani, G, Rossmann, R, Sargent, D.F, Gruetter, M.G, Richmond, T.J, Hennecke, H.
Deposit date:2001-06-22
Release date:2001-09-19
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.6 Å)
Cite:Structure of the soluble domain of a membrane-anchored thioredoxin-like protein from Bradyrhizobium japonicum reveals unusual properties.
J.Mol.Biol., 311, 2001
7OJ0
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BU of 7oj0 by Molmil
Cryo-EM structure of 70S ribosome stalled with TnaC peptide and RF2
Descriptor: 16S rRNA, 23S rRNA, 30S ribosomal protein S10, ...
Authors:Su, T, Kudva, R, Becker, T, Berninghausen, O, Heijne, G, Cheng, J, Beckmann, R.
Deposit date:2021-05-13
Release date:2021-09-15
Last modified:2024-04-24
Method:ELECTRON MICROSCOPY (3.5 Å)
Cite:Structural basis of l-tryptophan-dependent inhibition of release factor 2 by the TnaC arrest peptide.
Nucleic Acids Res., 49, 2021
7OIZ
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BU of 7oiz by Molmil
Cryo-EM structure of 70S ribosome stalled with TnaC peptide
Descriptor: 16S rRNA, 23S rRNA, 30S ribosomal protein S10, ...
Authors:Su, T, Kudva, R, Becker, T, Berninghausen, O, Heijne, G, Cheng, J, Beckmann, R.
Deposit date:2021-05-13
Release date:2021-09-15
Last modified:2024-04-24
Method:ELECTRON MICROSCOPY (2.9 Å)
Cite:Structural basis of l-tryptophan-dependent inhibition of release factor 2 by the TnaC arrest peptide.
Nucleic Acids Res., 49, 2021
7P3K
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BU of 7p3k by Molmil
Cryo-EM structure of 70S ribosome stalled with TnaC peptide (control)
Descriptor: 16S rRNA, 23S rRNA, 30S ribosomal protein S10, ...
Authors:Buschauer, R, Komar, T, Becker, T, Berninghausen, O, Cheng, J, Beckmann, R.
Deposit date:2021-07-08
Release date:2021-10-27
Last modified:2024-04-24
Method:ELECTRON MICROSCOPY (2.9 Å)
Cite:Structural basis of l-tryptophan-dependent inhibition of release factor 2 by the TnaC arrest peptide.
Nucleic Acids Res., 49, 2021
6YLG
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BU of 6ylg by Molmil
Rix1-Rea1 pre-60S particle - 60S core, body 1 (rigid body refinement)
Descriptor: 25S rRNA, 5.8S rRNA, 5S rRNA, ...
Authors:Kater, L, Beckmann, R.
Deposit date:2020-04-07
Release date:2020-07-29
Last modified:2020-09-02
Method:ELECTRON MICROSCOPY (3 Å)
Cite:Construction of the Central Protuberance and L1 Stalk during 60S Subunit Biogenesis.
Mol.Cell, 79, 2020
6YLX
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BU of 6ylx by Molmil
pre-60S State NE1 (TAP-Flag-Nop53)
Descriptor: 25S rRNA, 27S pre-rRNA (guanosine(2922)-2'-O)-methyltransferase, 5.8S rRNA, ...
Authors:Kater, L, Beckmann, R.
Deposit date:2020-04-07
Release date:2020-07-29
Last modified:2020-09-02
Method:ELECTRON MICROSCOPY (3.9 Å)
Cite:Construction of the Central Protuberance and L1 Stalk during 60S Subunit Biogenesis.
Mol.Cell, 79, 2020
6I7O
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BU of 6i7o by Molmil
The structure of a di-ribosome (disome) as a unit for RQC and NGD quality control pathways recognition.
Descriptor: 18S ribosomal RNA, 25S ribosomal RNA, 40S ribosomal protein S0-A, ...
Authors:Tesina, P, Cheng, J, Becker, T, Beckmann, R.
Deposit date:2018-11-16
Release date:2019-01-16
Last modified:2019-03-13
Method:ELECTRON MICROSCOPY (5.3 Å)
Cite:Collided ribosomes form a unique structural interface to induce Hel2-driven quality control pathways.
EMBO J., 38, 2019
6YLH
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BU of 6ylh by Molmil
Rix1-Rea1 pre-60S particle - full composite structure
Descriptor: 25S rRNA, 5.8S rRNA, 5S rRNA, ...
Authors:Kater, L, Beckmann, R.
Deposit date:2020-04-07
Release date:2020-07-29
Last modified:2020-09-02
Method:ELECTRON MICROSCOPY (3.1 Å)
Cite:Construction of the Central Protuberance and L1 Stalk during 60S Subunit Biogenesis.
Mol.Cell, 79, 2020

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