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PDB: 1323 results

3IY6
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Variable domains of the computer generated model (WAM) of Fab E fitted into the cryoEM reconstruction of the virus-Fab E complex
Descriptor: fragment from neutralizing antibody E (heavy chain), fragment from neutralizing antibody E (light chain)
Authors:Hafenstein, S, Bowman, V.D, Sun, T, Nelson, C.D, Palermo, L.M, Chipman, P.R, Battisti, A.J, Parrish, C.R, Rossmann, M.G.
Deposit date:2009-04-09
Release date:2009-05-12
Last modified:2018-07-18
Method:ELECTRON MICROSCOPY (12 Å)
Cite:Structural comparison of different antibodies interacting with parvovirus capsids
J.Virol., 83, 2009
3IY1
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BU of 3iy1 by Molmil
Variable domains of the WAM of Fab B fitted into the cryoEM reconstruction of the virus-Fab B complex
Descriptor: Fab B, heavy chain, light chain
Authors:Hafenstein, S, Bowman, V.D, Sun, T, Nelson, C.D, Palermo, L.M, Battisti, A.J, Parrish, C.R, Rossmann, M.G.
Deposit date:2009-04-09
Release date:2009-05-12
Last modified:2018-07-18
Method:ELECTRON MICROSCOPY (18 Å)
Cite:Structural comparison of different antibodies interacting with parvovirus capsids
J.Virol., 83, 2009
4LCT
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BU of 4lct by Molmil
Crystal Structure and Versatile Functional Roles of the COP9 Signalosome Subunit 1
Descriptor: COP9 signalosome complex subunit 1, SULFATE ION
Authors:Lee, J.-H, Yi, L, Li, J, Schweitzer, K, Borgmann, M, Naumann, M, Wu, H.
Deposit date:2013-06-23
Release date:2013-07-17
Last modified:2024-02-28
Method:X-RAY DIFFRACTION (2.7 Å)
Cite:Crystal structure and versatile functional roles of the COP9 signalosome subunit 1.
Proc.Natl.Acad.Sci.USA, 110, 2013
3IY5
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BU of 3iy5 by Molmil
Variable domains of the mouse Fab (1AIF) fitted into the cryoEM reconstruction of the virus-Fab 16 complex
Descriptor: antibody fragment IGG2A (heavy chain), antibody fragment IGG2A (light chain)
Authors:Hafenstein, S, Bowman, V.D, Sun, T, Nelson, C.D, Palermo, L.M, Chipman, P.R, Battisti, A.J, Parrish, C.R, Rossmann, M.G.
Deposit date:2009-04-09
Release date:2009-05-12
Last modified:2018-07-18
Method:ELECTRON MICROSCOPY (18 Å)
Cite:Structural comparison of different antibodies interacting with parvovirus capsids
J.Virol., 83, 2009
3IY3
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BU of 3iy3 by Molmil
Variable domains of the computer generated model (WAM) of Fab 8 fitted into the cryoEM reconstruction of the virus-Fab 8 complex
Descriptor: antibody fragment from neutralizing antibody 8 (heavy chain), antibody fragment from neutralizing antibody 8 (light chain)
Authors:Hafenstein, S, Bowman, V.D, Sun, T, Nelson, C.D, Palermo, L.M, Chipman, P.R, Battisti, A.J, Parrish, C.R, Rossmann, M.G.
Deposit date:2009-04-09
Release date:2009-05-12
Last modified:2018-07-18
Method:ELECTRON MICROSCOPY (11.1 Å)
Cite:Structural comparison of different antibodies interacting with parvovirus capsids
J.Virol., 83, 2009
1TX9
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BU of 1tx9 by Molmil
gpd prior to capsid assembly
Descriptor: Scaffolding protein D
Authors:Morais, M.C, Fisher, M, Kanamaru, K, Fane, B.A, Rossmann, M.G.
Deposit date:2004-06-24
Release date:2005-04-26
Last modified:2023-08-23
Method:X-RAY DIFFRACTION (3.31 Å)
Cite:Conformational switching by the scaffolding protein D directs the assembly of bacteriophage phiX174
Mol.Cell, 15, 2004
2Y9P
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BU of 2y9p by Molmil
Pex4p-Pex22p mutant II structure
Descriptor: PEROXISOME ASSEMBLY PROTEIN 22, UBIQUITIN-CONJUGATING ENZYME E2-21 KDA
Authors:Williams, C, van den Berg, M, Panjikar, S, Distel, B, Wilmanns, M.
Deposit date:2011-02-16
Release date:2012-02-29
Last modified:2023-12-20
Method:X-RAY DIFFRACTION (3.25 Å)
Cite:Pex4P-Pex22P Structure
To be Published
2YK1
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Structure of human anti-nicotine Fab fragment in complex with nicotine
Descriptor: (S)-3-(1-METHYLPYRROLIDIN-2-YL)PYRIDINE, FAB FRAGMENT, HEAVY CHAIN, ...
Authors:Tars, K, Kotelovica, S, Lipowsky, G, Bauer, M, Beerli, R, Bachmann, M, Maurer, P.
Deposit date:2011-05-25
Release date:2011-11-16
Last modified:2023-12-20
Method:X-RAY DIFFRACTION (1.85 Å)
Cite:Different Binding Modes of Free and Carrier-Protein-Coupled Nicotine in a Human Monoclonal Antibody.
J.Mol.Biol., 415, 2012
2N5P
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Universal base control oligonucleotide structure
Descriptor: DNA_(5'-D(*AP*TP*GP*GP*AP*GP*CP*TP*C)-3'), DNA_(5'-D(*GP*AP*GP*CP*TP*CP*CP*AP*T)-3')
Authors:Spring-Connell, A.M, Evich, M.G, Seela, F, Germann, M.W.
Deposit date:2015-07-23
Release date:2016-09-07
Last modified:2024-05-01
Method:SOLUTION NMR
Cite:Using NMR and molecular dynamics to link structure and dynamics effects of the universal base 8-aza, 7-deaza, N8 linked adenosine analog.
Nucleic Acids Res., 44, 2016
4Z25
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Mimivirus R135 (residues 51-702)
Descriptor: FLAVIN-ADENINE DINUCLEOTIDE, Putative GMC-type oxidoreductase R135
Authors:Klose, T, Rossmann, M.G.
Deposit date:2015-03-28
Release date:2015-06-03
Last modified:2023-09-27
Method:X-RAY DIFFRACTION (3.339 Å)
Cite:A Mimivirus Enzyme that Participates in Viral Entry.
Structure, 23, 2015
3J35
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Cryo-EM reconstruction of Dengue virus at 37 C
Descriptor: envelope protein
Authors:Zhang, X.Z, Sheng, J, Plevka, P, Kuhn, R.J, Diamond, M.S, Rossmann, M.G.
Deposit date:2013-02-24
Release date:2013-04-10
Last modified:2024-02-21
Method:ELECTRON MICROSCOPY (35 Å)
Cite:Dengue structure differs at the temperatures of its human and mosquito hosts.
Proc.Natl.Acad.Sci.USA, 110, 2013
8CAV
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BU of 8cav by Molmil
Discovery of the lanthipeptide Curvocidin and structural insights into its trifunctional synthetase CuvL
Descriptor: (4S)-2-METHYL-2,4-PENTANEDIOL, CuvA, MAGNESIUM ION, ...
Authors:Sigurdsson, A, Martins, B.M, Duettmann, S.A, Jasyk, M, Dimos-Roehl, B, Schoepf, F, Gemannter, M, Knittel, C.H, Schnegotyzki, R, Schmid, B, Kosol, S, Gonzalez-Viegas, M, Seidel, M, Huegelland, M, Leimkuehler, S, Dobbek, H, Mainz, A, Suessmuth, R.
Deposit date:2023-01-24
Release date:2023-06-14
Method:X-RAY DIFFRACTION (2.87 Å)
Cite:Discovery of the Lanthipeptide Curvocidin and Structural Insights into its Trifunctional Synthetase CuvL.
Angew.Chem.Int.Ed.Engl., 62, 2023
2YQ5
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BU of 2yq5 by Molmil
Crystal Structure of D-isomer specific 2-hydroxyacid dehydrogenase from Lactobacillus delbrueckii ssp. bulgaricus: NAD complexed form
Descriptor: D-ISOMER SPECIFIC 2-HYDROXYACID DEHYDROGENASE, NICOTINAMIDE-ADENINE-DINUCLEOTIDE
Authors:Holton, S.J, Anandhakrishnan, M, Geerlof, A, Wilmanns, M.
Deposit date:2012-11-05
Release date:2012-11-21
Last modified:2023-12-20
Method:X-RAY DIFFRACTION (2.75 Å)
Cite:Structural Characterization of D-Isomer Specific 2-Hydroxyacid Dehydrogenase from Lactobacillus Delbrueckii Ssp. Bulgaricus
J.Struct.Biol., 181, 2013
1SHW
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BU of 1shw by Molmil
EphB2 / EphrinA5 Complex Structure
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, Ephrin type-B receptor 2, Ephrin-A5, ...
Authors:Himanen, J.P, Chumley, M.J, Lackmann, M, Li, C, Barton, W.A, Jeffrey, P.D, Vearing, C, Geleick, D, Feldheim, D.A, Boyd, A.W.
Deposit date:2004-02-26
Release date:2004-05-18
Last modified:2024-04-03
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Repelling class discrimination: ephrin-A5 binds to and activates EphB2 receptor signaling
Nat.Neurosci., 7, 2004
3B3I
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BU of 3b3i by Molmil
Citrullination-dependent differential presentation of a self-peptide by HLA-B27 subtypes
Descriptor: Beta-2-microglobulin, GLYCEROL, HLA class I histocompatibility antigen, ...
Authors:Beltrami, A, Rossmann, M, Fiorillo, M.T, Paladini, F, Sorrentino, R, Saenger, W, Kumar, P, Ziegler, A, Uchanska-Ziegler, B.
Deposit date:2007-10-22
Release date:2008-07-22
Last modified:2023-11-15
Method:X-RAY DIFFRACTION (1.86 Å)
Cite:Citrullination-dependent differential presentation of a self-peptide by HLA-B27 subtypes.
J.Biol.Chem., 283, 2008
3B6S
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BU of 3b6s by Molmil
Crystal Structure of hla-b*2705 Complexed with the Citrullinated Vasoactive Intestinal Peptide Type 1 Receptor (vipr) Peptide (residues 400-408)
Descriptor: Beta-2-microglobulin, HLA class I histocompatibility antigen, B-27 alpha chain, ...
Authors:Beltrami, A, Rossmann, M, Fiorillo, M.T, Sorrentino, R, Saenger, W, Ziegler, A, Uchanska-Ziegler, A.
Deposit date:2007-10-29
Release date:2008-07-22
Last modified:2023-11-15
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Citrullination-dependent Differential Presentation of a Self-peptide by HLA-B27 Subtypes.
J.Biol.Chem., 283, 2008
4WM8
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BU of 4wm8 by Molmil
Crystal Structure of Human Enterovirus D68
Descriptor: DECANOIC ACID, VP1, VP2, ...
Authors:Liu, Y, Sheng, J, Fokine, A, Meng, G, Long, F, Kuhn, R.J, Rossmann, M.G.
Deposit date:2014-10-08
Release date:2015-01-14
Last modified:2023-12-27
Method:X-RAY DIFFRACTION (2 Å)
Cite:Virus structure. Structure and inhibition of EV-D68, a virus that causes respiratory illness in children.
Science, 347, 2015
2OF6
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BU of 2of6 by Molmil
Structure of immature West Nile virus
Descriptor: envelope glycoprotein E
Authors:Zhang, Y, Kaufmann, B, Chipman, P.R, Kuhn, R.J, Rossmann, M.G.
Deposit date:2007-01-02
Release date:2007-04-03
Last modified:2023-12-27
Method:ELECTRON MICROSCOPY (24 Å)
Cite:Structure of immature west nile virus.
J.Virol., 81, 2007
1UU1
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BU of 1uu1 by Molmil
Complex of Histidinol-phosphate aminotransferase (HisC) from Thermotoga maritima (Apo-form)
Descriptor: 4'-DEOXY-4'-AMINOPYRIDOXAL-5'-PHOSPHATE, HISTIDINOL-PHOSPHATE AMINOTRANSFERASE, PHOSPHORIC ACID MONO-[2-AMINO-3-(3H-IMIDAZOL-4-YL)-PROPYL]ESTER
Authors:Vega, M.C, Fernandez, F.J, Lehman, F, Wilmanns, M.
Deposit date:2003-12-12
Release date:2004-03-18
Last modified:2023-12-13
Method:X-RAY DIFFRACTION (2.38 Å)
Cite:Structural Studies of the Catalytic Reaction Pathway of a Hyperthermophilic Histidinol-Phosphate Aminotransferase
J.Biol.Chem., 279, 2004
1YN8
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BU of 1yn8 by Molmil
SH3 domain of yeast NBP2
Descriptor: CALCIUM ION, NAP1-binding protein 2
Authors:Kursula, P, Kursula, I, Song, Y.H, Wilmanns, M.
Deposit date:2005-01-24
Release date:2006-05-30
Last modified:2024-03-13
Method:X-RAY DIFFRACTION (1.7 Å)
Cite:Structural analysis of the yeast SH3 domain proteome
To be Published
3IY4
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BU of 3iy4 by Molmil
Variable domains of the computer generated model (WAM) of Fab 15 fitted into the cryoEM reconstruction of the virus-Fab 15 complex
Descriptor: fragment of neutralizing antibody 15 (heavy chain), fragment of neutralizing antibody 15 (light chain)
Authors:Hafenstein, S, Bowman, V.D, Sun, T, Nelson, C.D, Palermo, L.M, Chipman, P.R, Battisti, A.J, Parrish, C.R, Rossmann, M.G.
Deposit date:2009-04-09
Release date:2009-05-12
Last modified:2018-07-18
Method:ELECTRON MICROSCOPY (11.7 Å)
Cite:Structural comparison of different antibodies interacting with parvovirus capsids
J.Virol., 83, 2009
4Z26
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BU of 4z26 by Molmil
Mimivirus R135 (residues 51-702)
Descriptor: FLAVIN-ADENINE DINUCLEOTIDE, Putative GMC-type oxidoreductase R135
Authors:Klose, T, Rossmann, M.G.
Deposit date:2015-03-28
Release date:2015-05-13
Last modified:2023-09-27
Method:X-RAY DIFFRACTION (2.915 Å)
Cite:A Mimivirus Enzyme that Participates in Viral Entry.
Structure, 23, 2015
1COV
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BU of 1cov by Molmil
COXSACKIEVIRUS B3 COAT PROTEIN
Descriptor: COXSACKIEVIRUS COAT PROTEIN, MYRISTIC ACID, PALMITIC ACID
Authors:Muckelbauer, J.K, Rossmann, M.G.
Deposit date:1994-10-19
Release date:1996-03-08
Last modified:2023-04-19
Method:X-RAY DIFFRACTION (3.5 Å)
Cite:Structure determination of coxsackievirus B3 to 3.5 A resolution.
Acta Crystallogr.,Sect.D, 51, 1995
1JO6
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Solution structure of the cytoplasmic N-terminus of the BK beta-subunit KCNMB2
Descriptor: potassium large conductance calcium-activated channel, subfamily M, beta member 2
Authors:Bentrop, D, Beyermann, M, Wissmann, R, Fakler, B.
Deposit date:2001-07-27
Release date:2001-11-16
Last modified:2024-05-22
Method:SOLUTION NMR
Cite:NMR structure of the "ball-and-chain" domain of KCNMB2, the beta 2-subunit of large conductance Ca2+- and voltage-activated potassium channels.
J.Biol.Chem., 276, 2001
4K8A
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BU of 4k8a by Molmil
Fragment-based discovery of Focal Adhesion Kinase Inhibitors
Descriptor: 3-bromo-5-(2H-tetrazol-5-yl)pyridine, Focal adhesion kinase 1
Authors:Graedler, U, Bomke, J, Musil, D, Dresing, V, Lehmann, M, Hoelzemann, G, Esdar, C, Krier, M, Heinrich, T.
Deposit date:2013-04-18
Release date:2013-09-11
Last modified:2023-12-27
Method:X-RAY DIFFRACTION (2.91 Å)
Cite:Fragment-based discovery of focal adhesion kinase inhibitors.
Bioorg.Med.Chem.Lett., 23, 2013

222036

数据于2024-07-03公开中

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